Wall clock time and date at job start Mon Mar 30 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.86615 * 2 1 4 4 C 1.54745 * 111.01130 * 236.15813 * 2 1 3 5 5 C 1.51687 * 102.53397 * 217.70413 * 4 2 1 6 6 N 1.38169 * 125.84501 * 195.63024 * 5 4 2 7 7 C 1.34778 * 120.00225 * 179.71515 * 6 5 4 8 8 O 1.21540 * 119.99614 * 0.02562 * 7 6 5 9 9 C 1.47828 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.39939 * 120.02949 * 0.02562 * 9 7 6 11 11 C 1.38327 * 120.35712 * 180.02562 * 10 9 7 12 12 C 1.37754 * 120.41095 * 359.97438 * 11 10 9 13 13 C 1.40753 * 120.04872 * 0.02562 * 12 11 10 14 14 C 1.41436 * 120.17434 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00300 * 24.33507 * 14 13 12 16 16 C 1.39943 * 120.00017 * 204.33883 * 14 13 12 17 17 N 1.30829 * 119.99637 * 17.73069 * 16 14 13 18 18 Si 1.86797 * 120.00222 * 197.73765 * 16 14 13 19 19 H 1.48507 * 109.46987 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47265 * 119.99738 * 18 16 14 21 21 H 1.48502 * 109.46882 * 239.99940 * 18 16 14 22 22 C 1.39028 * 120.02348 * 179.72860 * 9 7 6 23 23 N 1.28825 * 108.30713 * 15.37690 * 5 4 2 24 24 O 1.41387 * 112.92387 * 0.31561 * 23 5 4 25 25 H 1.09003 * 109.46894 * 297.63784 * 1 2 3 26 26 H 1.09000 * 109.46816 * 57.63991 * 1 2 3 27 27 H 1.08998 * 109.46977 * 177.64291 * 1 2 3 28 28 H 1.09001 * 110.79443 * 99.44301 * 4 2 1 29 29 H 1.09002 * 110.79509 * 335.96710 * 4 2 1 30 30 H 0.97003 * 119.99965 * 359.72936 * 6 5 4 31 31 H 1.07998 * 119.82256 * 359.97292 * 10 9 7 32 32 H 1.07998 * 119.79248 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.97067 * 179.97438 * 12 11 10 34 34 H 0.96997 * 119.99648 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.20597 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0849 -0.8045 -1.1998 5 6 3.2965 -1.4938 -0.6019 6 7 4.3198 -2.0919 -1.3121 7 6 5.3475 -2.6680 -0.6576 8 8 5.3739 -2.6618 0.5575 9 6 6.4425 -3.3073 -1.4175 10 6 6.4129 -3.3142 -2.8166 11 6 7.4337 -3.9110 -3.5344 12 6 8.4911 -4.5047 -2.8810 13 6 8.5382 -4.5077 -1.4742 14 6 9.6224 -5.1169 -0.8005 15 1 10.5746 -5.2265 -1.2982 16 6 9.4612 -5.5779 0.5109 17 7 8.2606 -5.7699 0.9939 18 14 10.9603 -5.9190 1.5719 19 1 12.1925 -5.6250 0.7969 20 1 10.9177 -5.0573 2.7806 21 1 10.9624 -7.3464 1.9815 22 6 7.5056 -3.8967 -0.7429 23 7 3.2109 -1.4216 0.6815 24 8 2.0464 -0.7494 1.1187 25 1 -0.3633 0.4767 0.9104 26 1 -0.3633 0.5501 -0.8681 27 1 -0.3633 -1.0268 -0.0423 28 1 2.3797 -0.1374 -2.0099 29 1 1.3548 -1.5362 -1.5459 30 1 4.2986 -2.0969 -2.2819 31 1 5.5883 -2.8519 -3.3387 32 1 7.4019 -3.9107 -4.6139 33 1 9.2841 -4.9689 -3.4485 34 1 8.1489 -6.0890 1.9030 35 1 7.5353 -3.8892 0.3367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270630586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:40 Heat of formation + Delta-G solvation = 7.586860 kcal Electronic energy + Delta-G solvation = -20120.684412 eV Core-core repulsion = 16892.592107 eV Total energy + Delta-G solvation = -3228.092305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47928 -39.09352 -37.18018 -34.98470 -33.82077 -32.47486 -31.57064 -29.94836 -29.53043 -27.27587 -25.46390 -23.75911 -21.91901 -21.18293 -20.57957 -19.58061 -17.99771 -17.28960 -16.42415 -15.71020 -15.56441 -15.10921 -14.76163 -14.68632 -14.14317 -13.76191 -13.48282 -13.30801 -13.02502 -12.83518 -12.62628 -12.36615 -11.97149 -11.72070 -11.48364 -11.24298 -11.15148 -10.84055 -10.57909 -10.54266 -10.33995 -10.08238 -9.79794 -9.29613 -9.22352 -8.53822 -7.76637 -7.63433 -6.87942 -4.49778 1.76289 2.34239 2.69813 2.73458 3.05068 3.09304 3.10985 3.47567 3.73330 3.87370 4.22912 4.36292 4.53591 4.66607 4.91119 5.04376 5.14634 5.27528 5.42888 5.49540 5.61037 5.70030 5.85624 5.93966 6.13446 6.57806 6.66444 6.86497 6.89549 7.10778 7.20228 7.25395 7.58505 7.67685 7.83845 7.96824 8.07263 8.40053 8.60296 8.72086 8.73494 10.06770 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.004198 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.866388 B = 6667.636777 C = 7606.064812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.140 4.140 5 C 0.287 3.713 6 N -0.635 5.635 7 C 0.554 3.446 8 O -0.482 6.482 9 C -0.126 4.126 10 C -0.223 4.223 11 C -0.093 4.093 12 C -0.211 4.211 13 C 0.099 3.901 14 C -0.456 4.456 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.780 5.780 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.273 1.273 22 C -0.088 4.088 23 N -0.292 5.292 24 O -0.201 6.201 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.421 0.579 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.286 0.714 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 7.957 -6.606 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.103 0.897 4 C -0.181 4.181 5 C 0.005 3.995 6 N -0.290 5.290 7 C 0.344 3.656 8 O -0.352 6.352 9 C -0.129 4.129 10 C -0.244 4.244 11 C -0.111 4.111 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.484 4.484 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.404 5.404 18 Si 0.735 3.265 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.198 1.198 22 C -0.108 4.108 23 N -0.047 5.047 24 O -0.217 6.217 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.260 0.740 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.918 7.582 -4.346 13.219 hybrid contribution 0.078 0.045 -0.946 0.950 sum -9.840 7.627 -5.292 13.528 Atomic orbital electron populations 1.21848 0.92245 1.03281 1.03046 1.23557 0.96315 0.96430 0.85624 0.89704 1.23080 0.94281 0.99808 1.00930 1.23054 0.89996 0.94373 0.92037 1.43053 1.19610 1.55635 1.10695 1.19281 0.81317 0.77159 0.87825 1.90851 1.76103 1.54756 1.13442 1.19254 0.95674 1.04802 0.93218 1.20288 1.01106 1.10916 0.92051 1.20425 0.94773 0.98535 0.97408 1.21121 0.99877 1.07562 0.94512 1.17595 0.92165 0.89541 0.91020 1.19658 0.98164 1.33258 0.97365 0.89837 1.26005 0.97239 0.93180 0.98346 1.69777 1.23213 1.30509 1.16851 0.86204 0.81694 0.78690 0.79890 1.18271 1.19440 1.19827 1.21668 0.92822 0.95484 1.00808 1.79171 1.00966 1.14365 1.10247 1.91307 1.38048 1.61645 1.30735 0.91090 0.90857 0.91539 0.87877 0.87572 0.73968 0.89216 0.88666 0.88419 0.90242 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.62 37.16 0.36 -0.82 16 2 C 0.04 0.45 4.45 -25.81 -0.11 0.33 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.14 -1.44 6.64 -26.48 -0.18 -1.61 16 5 C 0.29 4.60 8.05 -153.36 -1.23 3.37 16 6 N -0.63 -10.40 5.32 -9.76 -0.05 -10.45 16 7 C 0.55 12.06 7.73 -12.34 -0.10 11.97 16 8 O -0.48 -12.49 15.01 5.33 0.08 -12.41 16 9 C -0.13 -2.86 5.87 -105.04 -0.62 -3.48 16 10 C -0.22 -4.37 9.55 -38.91 -0.37 -4.75 16 11 C -0.09 -1.87 10.01 -39.73 -0.40 -2.26 16 12 C -0.21 -4.79 9.78 -38.81 -0.38 -5.17 16 13 C 0.10 2.55 5.57 -106.87 -0.60 1.95 16 14 C -0.46 -11.68 9.05 -37.73 -0.34 -12.02 16 15 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 16 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 17 N -0.78 -20.44 10.96 55.55 0.61 -19.83 16 18 Si 0.91 18.54 29.59 -169.99 -5.03 13.50 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 22 C -0.09 -2.28 8.24 -38.43 -0.32 -2.60 16 23 N -0.29 -5.83 10.64 33.30 0.35 -5.47 16 24 O -0.20 -3.44 12.24 -11.37 -0.14 -3.58 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 0.90 7.88 -51.93 -0.41 0.49 16 30 H 0.42 5.19 6.83 -40.82 -0.28 4.91 16 31 H 0.09 1.36 6.38 -52.49 -0.33 1.03 16 32 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 34 H 0.29 6.92 8.30 -40.82 -0.34 6.58 16 35 H 0.14 3.84 5.75 -52.49 -0.30 3.53 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -32.17 304.60 -7.79 -39.96 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -3.83 Total: 7.07 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -4.37 Total: -13.38 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.91 Total: -35.75 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.06 Total: -15.99 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.17 -7.79 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270630586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.547 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds