Wall clock time and date at job start Mon Mar 30 2020 01:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.86615 * 2 1 4 4 C 1.54745 * 111.01130 * 236.15813 * 2 1 3 5 5 C 1.51687 * 102.53397 * 217.70413 * 4 2 1 6 6 N 1.38169 * 125.84501 * 195.63024 * 5 4 2 7 7 C 1.34778 * 120.00225 * 179.71515 * 6 5 4 8 8 O 1.21540 * 119.99614 * 0.02562 * 7 6 5 9 9 C 1.47828 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.39939 * 120.02949 * 0.02562 * 9 7 6 11 11 C 1.38327 * 120.35712 * 180.02562 * 10 9 7 12 12 C 1.37754 * 120.41095 * 359.97438 * 11 10 9 13 13 C 1.40753 * 120.04872 * 0.02562 * 12 11 10 14 14 C 1.41436 * 120.17434 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00300 * 24.33507 * 14 13 12 16 16 C 1.39943 * 120.00017 * 204.33883 * 14 13 12 17 17 N 1.30829 * 119.99637 * 17.73069 * 16 14 13 18 18 Si 1.86797 * 120.00222 * 197.73765 * 16 14 13 19 19 H 1.48507 * 109.46987 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47265 * 119.99738 * 18 16 14 21 21 H 1.48502 * 109.46882 * 239.99940 * 18 16 14 22 22 C 1.39028 * 120.02348 * 179.72860 * 9 7 6 23 23 N 1.28825 * 108.30713 * 15.37690 * 5 4 2 24 24 O 1.41387 * 112.92387 * 0.31561 * 23 5 4 25 25 H 1.09003 * 109.46894 * 297.63784 * 1 2 3 26 26 H 1.09000 * 109.46816 * 57.63991 * 1 2 3 27 27 H 1.08998 * 109.46977 * 177.64291 * 1 2 3 28 28 H 1.09001 * 110.79443 * 99.44301 * 4 2 1 29 29 H 1.09002 * 110.79509 * 335.96710 * 4 2 1 30 30 H 0.97003 * 119.99965 * 359.72936 * 6 5 4 31 31 H 1.07998 * 119.82256 * 359.97292 * 10 9 7 32 32 H 1.07998 * 119.79248 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.97067 * 179.97438 * 12 11 10 34 34 H 0.96997 * 119.99648 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.20597 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0849 -0.8045 -1.1998 5 6 3.2965 -1.4938 -0.6019 6 7 4.3198 -2.0919 -1.3121 7 6 5.3475 -2.6680 -0.6576 8 8 5.3739 -2.6618 0.5575 9 6 6.4425 -3.3073 -1.4175 10 6 6.4129 -3.3142 -2.8166 11 6 7.4337 -3.9110 -3.5344 12 6 8.4911 -4.5047 -2.8810 13 6 8.5382 -4.5077 -1.4742 14 6 9.6224 -5.1169 -0.8005 15 1 10.5746 -5.2265 -1.2982 16 6 9.4612 -5.5779 0.5109 17 7 8.2606 -5.7699 0.9939 18 14 10.9603 -5.9190 1.5719 19 1 12.1925 -5.6250 0.7969 20 1 10.9177 -5.0573 2.7806 21 1 10.9624 -7.3464 1.9815 22 6 7.5056 -3.8967 -0.7429 23 7 3.2109 -1.4216 0.6815 24 8 2.0464 -0.7494 1.1187 25 1 -0.3633 0.4767 0.9104 26 1 -0.3633 0.5501 -0.8681 27 1 -0.3633 -1.0268 -0.0423 28 1 2.3797 -0.1374 -2.0099 29 1 1.3548 -1.5362 -1.5459 30 1 4.2986 -2.0969 -2.2819 31 1 5.5883 -2.8519 -3.3387 32 1 7.4019 -3.9107 -4.6139 33 1 9.2841 -4.9689 -3.4485 34 1 8.1489 -6.0890 1.9030 35 1 7.5353 -3.8892 0.3367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270630586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:39 Heat of formation + Delta-G solvation = -13.609647 kcal Electronic energy + Delta-G solvation = -20121.603561 eV Core-core repulsion = 16892.592107 eV Total energy + Delta-G solvation = -3229.011454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84038 -40.53337 -38.90854 -36.50713 -35.60558 -33.42034 -32.97421 -31.60608 -31.27160 -28.14742 -27.29079 -25.36453 -22.92373 -22.85413 -22.10477 -21.06355 -19.68338 -18.54363 -17.95291 -17.10054 -16.98997 -16.61795 -16.31092 -16.17579 -15.73572 -15.15772 -14.88898 -14.56266 -14.37301 -14.31500 -13.77576 -13.54012 -13.30598 -13.02146 -12.85869 -12.80347 -12.57064 -12.28827 -12.20746 -12.03664 -11.64734 -11.54226 -11.49823 -11.10849 -10.88056 -9.91384 -9.52019 -9.41810 -8.69660 -6.40645 0.12761 0.92306 1.00841 1.35470 1.39303 1.45864 1.51648 2.05670 2.17337 2.42506 2.74450 3.28370 3.51544 3.64477 3.66171 3.93419 4.16592 4.21617 4.40614 4.52774 4.55853 4.59203 4.85801 4.90197 4.98165 5.04928 5.14256 5.23619 5.26173 5.36340 5.46757 5.75765 5.86357 5.98859 6.04753 6.27266 6.55071 6.70702 6.85410 6.91435 7.05985 8.27055 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.004198 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.866388 B = 6667.636777 C = 7606.064812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 H 0.095 0.905 4 C -0.123 4.123 5 C 0.284 3.716 6 N -0.612 5.612 7 C 0.553 3.447 8 O -0.535 6.535 9 C -0.137 4.137 10 C -0.192 4.192 11 C -0.092 4.092 12 C -0.211 4.211 13 C 0.067 3.933 14 C -0.495 4.495 15 H 0.086 0.914 16 C 0.029 3.971 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.248 1.248 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.130 4.130 23 N -0.362 5.362 24 O -0.225 6.225 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.443 0.557 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.286 0.714 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.878 9.339 -10.312 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 H 0.113 0.887 4 C -0.163 4.163 5 C 0.003 3.997 6 N -0.268 5.268 7 C 0.344 3.656 8 O -0.409 6.409 9 C -0.140 4.140 10 C -0.211 4.211 11 C -0.110 4.110 12 C -0.231 4.231 13 C 0.065 3.935 14 C -0.524 4.524 15 H 0.104 0.896 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.171 1.171 20 H -0.199 1.199 21 H -0.189 1.189 22 C -0.150 4.150 23 N -0.117 5.117 24 O -0.243 6.243 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.150 0.850 30 H 0.287 0.713 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.605 8.984 -8.130 16.778 hybrid contribution 0.396 -0.231 0.005 0.458 sum -11.210 8.753 -8.124 16.379 Atomic orbital electron populations 1.21872 0.89694 1.03647 1.04540 1.24040 0.98300 0.96492 0.84373 0.88736 1.23200 0.91629 1.00348 1.01137 1.23627 0.90773 0.93245 0.92059 1.42599 1.18364 1.54285 1.11528 1.19242 0.82220 0.77022 0.87137 1.90835 1.77440 1.56832 1.15794 1.19504 0.95104 1.04418 0.94969 1.20921 1.01938 1.07853 0.90437 1.20971 0.93280 0.96764 0.99963 1.21476 1.01164 1.07040 0.93422 1.17922 0.92552 0.90321 0.92726 1.19913 0.98676 1.35167 0.98672 0.89559 1.26861 0.99849 0.92557 0.99360 1.69888 1.25398 1.32765 1.17128 0.85168 0.78287 0.78635 0.77736 1.17146 1.19874 1.18893 1.21448 0.95394 0.98795 0.99383 1.79104 1.03102 1.16366 1.13150 1.91249 1.37286 1.62354 1.33388 0.91448 0.87343 0.91890 0.83529 0.84981 0.71307 0.83420 0.83636 0.87084 0.90391 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.62 71.98 0.69 -1.10 16 2 C 0.03 0.52 4.45 31.19 0.14 0.66 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -2.00 6.64 30.76 0.20 -1.79 16 5 C 0.28 8.59 8.05 137.89 1.11 9.70 16 6 N -0.61 -18.58 5.32 -303.07 -1.61 -20.20 16 7 C 0.55 24.27 7.73 86.78 0.67 24.94 16 8 O -0.54 -29.32 15.01 -3.84 -0.06 -29.38 16 9 C -0.14 -6.18 5.87 -20.14 -0.12 -6.30 16 10 C -0.19 -6.73 9.55 22.70 0.22 -6.52 16 11 C -0.09 -3.30 10.01 22.18 0.22 -3.07 16 12 C -0.21 -9.33 9.78 22.77 0.22 -9.11 16 13 C 0.07 3.55 5.57 -21.32 -0.12 3.44 16 14 C -0.50 -26.63 9.05 23.47 0.21 -26.42 16 15 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 16 C 0.03 1.50 5.14 85.26 0.44 1.94 16 17 N -0.83 -46.65 10.96 21.83 0.24 -46.41 16 18 Si 0.98 40.00 29.59 68.60 2.03 42.03 16 19 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 C -0.13 -7.09 8.24 23.01 0.19 -6.90 16 23 N -0.36 -14.64 10.64 -48.57 -0.52 -15.16 16 24 O -0.22 -7.73 12.24 -38.31 -0.47 -8.20 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 28 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.13 1.54 7.88 -2.39 -0.02 1.52 16 30 H 0.44 8.75 6.83 -92.71 -0.63 8.12 16 31 H 0.15 3.43 6.38 -2.91 -0.02 3.41 16 32 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 33 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 34 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 35 H 0.10 5.92 5.75 -2.91 -0.02 5.90 16 Total: -1.00 -79.92 304.60 4.19 -75.73 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.50 Total: 22.12 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.08 Total: -20.53 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.89 Total: -81.77 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.53 Total: -37.57 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -79.92 4.19 -75.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270630586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.118 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds