Wall clock time and date at job start Mon Mar 30 2020 01:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.78889 * 2 1 4 4 C 1.53241 * 109.63223 * 239.50553 * 2 1 3 5 5 N 1.46471 * 109.85956 * 178.28771 * 4 2 1 6 6 C 1.46898 * 111.00396 * 197.76538 * 5 4 2 7 7 C 1.50696 * 109.47176 * 170.00158 * 6 5 4 8 8 O 1.21288 * 120.00279 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99735 * 179.97438 * 7 6 5 10 10 C 1.37105 * 119.99904 * 179.97438 * 9 7 6 11 11 H 1.07991 * 119.99780 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99815 * 179.72596 * 10 9 7 13 13 N 1.31412 * 119.99962 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99686 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46850 * 90.00463 * 14 12 10 16 16 H 1.48504 * 109.47159 * 210.00116 * 14 12 10 17 17 H 1.48497 * 109.47216 * 330.00562 * 14 12 10 18 18 C 1.46473 * 112.55499 * 72.65534 * 5 4 2 19 19 C 1.53241 * 109.86237 * 287.34256 * 18 5 4 20 20 H 1.09003 * 109.79846 * 302.20216 * 19 18 5 21 21 C 1.53002 * 109.63468 * 181.70654 * 19 18 5 22 22 S 1.81894 * 109.63138 * 120.48938 * 2 1 3 23 23 O 1.42104 * 109.47024 * 55.16907 * 22 2 1 24 24 H 1.08999 * 109.46928 * 180.49471 * 1 2 3 25 25 H 1.08994 * 109.47361 * 300.49594 * 1 2 3 26 26 H 1.09000 * 109.46584 * 60.49741 * 1 2 3 27 27 H 1.09004 * 109.40877 * 58.17178 * 4 2 1 28 28 H 1.08998 * 109.40673 * 298.40994 * 4 2 1 29 29 H 1.09000 * 109.46741 * 50.00100 * 6 5 4 30 30 H 1.09002 * 109.46898 * 290.00090 * 6 5 4 31 31 H 0.97005 * 120.00189 * 0.02562 * 9 7 6 32 32 H 0.97000 * 119.99308 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.40749 * 47.46938 * 18 5 4 34 34 H 1.09003 * 109.40175 * 167.22214 * 18 5 4 35 35 H 1.09004 * 109.47066 * 300.99486 * 21 19 18 36 36 H 1.09003 * 109.46647 * 60.98847 * 21 19 18 37 37 H 1.08998 * 109.47624 * 180.98785 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0449 -0.7324 -1.2437 5 7 3.5090 -0.7000 -1.2698 6 6 4.0186 -1.0042 -2.6135 7 6 5.4983 -0.7238 -2.6650 8 8 6.0722 -0.3116 -1.6792 9 7 6.1843 -0.9321 -3.8063 10 6 7.5305 -0.6765 -3.8534 11 1 8.0412 -0.3087 -2.9758 12 6 8.2388 -0.8967 -5.0284 13 7 7.6182 -1.3493 -6.0947 14 14 10.0731 -0.5491 -5.0923 15 1 10.8222 -1.7713 -4.7045 16 1 10.4539 -0.1519 -6.4716 17 1 10.4013 0.5520 -4.1515 18 6 4.1085 -1.5849 -0.2683 19 6 3.9231 -0.9886 1.1311 20 1 4.3713 0.0042 1.1717 21 6 4.5880 -1.8955 2.1686 22 16 2.1412 -0.8692 1.4763 23 8 1.5796 -2.1737 1.5243 24 1 -0.3633 -1.0276 0.0089 25 1 -0.3634 0.5215 0.8854 26 1 -0.3632 0.5061 -0.8944 27 1 1.6560 -0.2453 -2.1379 28 1 1.7059 -1.7681 -1.2204 29 1 3.5051 -0.3817 -3.3463 30 1 3.8398 -2.0552 -2.8406 31 1 5.7255 -1.2621 -4.5947 32 1 8.1127 -1.5026 -6.9150 33 1 3.6263 -2.5615 -0.3127 34 1 5.1726 -1.6982 -0.4757 35 1 4.1428 -2.8894 2.1210 36 1 5.6555 -1.9652 1.9593 37 1 4.4395 -1.4781 3.1645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408353074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:59 Heat of formation + Delta-G solvation = -68.527851 kcal Electronic energy + Delta-G solvation = -19787.042248 eV Core-core repulsion = 16691.093313 eV Total energy + Delta-G solvation = -3095.948935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.98470 -37.16205 -35.53994 -34.17489 -33.85438 -32.47049 -31.23753 -27.90614 -26.68165 -25.02804 -23.34373 -21.37664 -21.02227 -19.20656 -17.88496 -17.68960 -16.23691 -15.93078 -15.67484 -15.24128 -14.78473 -14.47661 -14.17079 -13.70083 -13.64119 -13.37888 -12.96090 -12.82597 -12.44820 -12.30224 -12.22947 -11.83956 -11.76177 -11.50186 -11.32007 -11.13172 -11.04991 -11.03035 -10.83603 -10.41789 -10.25027 -9.59846 -9.44333 -8.60029 -8.09203 -7.96154 -7.93985 -6.44904 -3.85945 1.66882 2.61266 3.15359 3.24344 3.29903 3.70791 3.85687 3.96863 4.19213 4.69201 4.85084 4.95777 5.05003 5.17236 5.20993 5.28836 5.39422 5.42338 5.52246 5.63879 5.69201 5.72522 5.83512 5.86816 5.93266 6.04339 6.17448 6.21628 6.28658 6.36834 7.11362 7.30580 7.52003 8.02356 8.57549 9.14243 9.50232 10.01329 10.72806 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.034535 B = 0.004289 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.565884 B = 6526.689174 C = 7052.872629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.397 4.397 3 H 0.132 0.868 4 C 0.063 3.937 5 N -0.528 5.528 6 C 0.050 3.950 7 C 0.442 3.558 8 O -0.576 6.576 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.061 3.939 19 C -0.386 4.386 20 H 0.134 0.866 21 C -0.128 4.128 22 S 1.223 4.777 23 O -0.852 6.852 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.392 0.608 32 H 0.272 0.728 33 H 0.025 0.975 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.077 3.410 12.253 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.515 4.515 3 H 0.150 0.850 4 C -0.066 4.066 5 N -0.252 5.252 6 C -0.081 4.081 7 C 0.228 3.772 8 O -0.460 6.460 9 N -0.199 5.199 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.067 4.067 19 C -0.504 4.504 20 H 0.152 0.848 21 C -0.187 4.187 22 S 1.421 4.579 23 O -0.847 6.847 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.225 0.775 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.995 3.757 13.613 18.529 hybrid contribution 0.865 -1.910 -2.952 3.621 sum -11.130 1.846 10.661 15.522 Atomic orbital electron populations 1.21430 0.91905 1.02491 1.02817 1.27370 1.02050 1.10142 1.11964 0.85032 1.22017 0.87883 0.98403 0.98293 1.60699 1.04679 1.54930 1.04925 1.21803 0.96345 0.99807 0.90101 1.19679 0.87676 0.85103 0.84782 1.90483 1.70118 1.50351 1.35063 1.41877 1.09118 1.57824 1.11106 1.19699 0.83304 1.41256 0.98646 0.87863 1.25274 1.00633 0.97066 0.94932 1.69616 1.37138 1.45346 1.02163 0.85848 0.82027 0.78875 0.77489 1.20424 1.20892 1.19356 1.22140 1.03808 0.91482 0.89234 1.27275 1.16984 1.06567 0.99602 0.84789 1.21430 1.01797 0.98605 0.96864 1.70096 0.86401 0.99127 1.02259 1.93075 1.71987 1.39100 1.80573 0.92370 0.91491 0.91640 0.90165 0.94778 0.89100 0.93519 0.77490 0.91833 0.95725 0.87136 0.92583 0.91133 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.40 -4.38 3.32 -26.60 -0.09 -4.47 16 3 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.06 0.89 4.72 -3.93 -0.02 0.87 16 5 N -0.53 -9.03 4.17 -236.49 -0.99 -10.01 16 6 C 0.05 0.93 5.45 -4.98 -0.03 0.91 16 7 C 0.44 10.43 7.32 -10.99 -0.08 10.35 16 8 O -0.58 -15.14 13.91 5.55 0.08 -15.06 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 14 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 C 0.06 1.08 4.24 -3.93 -0.02 1.06 16 19 C -0.39 -5.22 3.32 -26.61 -0.09 -5.31 16 20 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 21 C -0.13 -1.59 9.19 37.16 0.34 -1.25 16 22 S 1.22 13.71 12.61 -107.50 -1.36 12.36 16 23 O -0.85 -14.28 18.02 -35.23 -0.64 -14.92 16 24 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.04 7.76 -51.93 -0.40 0.64 16 28 H 0.03 0.53 7.91 -51.93 -0.41 0.12 16 29 H 0.09 1.51 7.84 -51.93 -0.41 1.10 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.02 0.45 7.92 -51.93 -0.41 0.04 16 34 H 0.11 2.29 5.61 -51.93 -0.29 2.00 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -34.76 313.51 -7.97 -42.73 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.56 Total: 9.07 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 0.12 Total: -6.64 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.32 Total: -48.22 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.56 Total: -29.98 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 13.71 SS G_CDS: -1.36 Total: 12.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.76 -7.97 -42.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408353074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.798 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds