Wall clock time and date at job start Mon Mar 30 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.78889 * 2 1 4 4 C 1.53241 * 109.63223 * 239.50553 * 2 1 3 5 5 N 1.46471 * 109.85956 * 178.28771 * 4 2 1 6 6 C 1.46898 * 111.00396 * 197.76538 * 5 4 2 7 7 C 1.50696 * 109.47176 * 170.00158 * 6 5 4 8 8 O 1.21288 * 120.00279 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99735 * 179.97438 * 7 6 5 10 10 C 1.37105 * 119.99904 * 179.97438 * 9 7 6 11 11 H 1.07991 * 119.99780 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99815 * 179.72596 * 10 9 7 13 13 N 1.31412 * 119.99962 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99686 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46850 * 90.00463 * 14 12 10 16 16 H 1.48504 * 109.47159 * 210.00116 * 14 12 10 17 17 H 1.48497 * 109.47216 * 330.00562 * 14 12 10 18 18 C 1.46473 * 112.55499 * 72.65534 * 5 4 2 19 19 C 1.53241 * 109.86237 * 287.34256 * 18 5 4 20 20 H 1.09003 * 109.79846 * 302.20216 * 19 18 5 21 21 C 1.53002 * 109.63468 * 181.70654 * 19 18 5 22 22 S 1.81894 * 109.63138 * 120.48938 * 2 1 3 23 23 O 1.42104 * 109.47024 * 55.16907 * 22 2 1 24 24 H 1.08999 * 109.46928 * 180.49471 * 1 2 3 25 25 H 1.08994 * 109.47361 * 300.49594 * 1 2 3 26 26 H 1.09000 * 109.46584 * 60.49741 * 1 2 3 27 27 H 1.09004 * 109.40877 * 58.17178 * 4 2 1 28 28 H 1.08998 * 109.40673 * 298.40994 * 4 2 1 29 29 H 1.09000 * 109.46741 * 50.00100 * 6 5 4 30 30 H 1.09002 * 109.46898 * 290.00090 * 6 5 4 31 31 H 0.97005 * 120.00189 * 0.02562 * 9 7 6 32 32 H 0.97000 * 119.99308 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.40749 * 47.46938 * 18 5 4 34 34 H 1.09003 * 109.40175 * 167.22214 * 18 5 4 35 35 H 1.09004 * 109.47066 * 300.99486 * 21 19 18 36 36 H 1.09003 * 109.46647 * 60.98847 * 21 19 18 37 37 H 1.08998 * 109.47624 * 180.98785 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0449 -0.7324 -1.2437 5 7 3.5090 -0.7000 -1.2698 6 6 4.0186 -1.0042 -2.6135 7 6 5.4983 -0.7238 -2.6650 8 8 6.0722 -0.3116 -1.6792 9 7 6.1843 -0.9321 -3.8063 10 6 7.5305 -0.6765 -3.8534 11 1 8.0412 -0.3087 -2.9758 12 6 8.2388 -0.8967 -5.0284 13 7 7.6182 -1.3493 -6.0947 14 14 10.0731 -0.5491 -5.0923 15 1 10.8222 -1.7713 -4.7045 16 1 10.4539 -0.1519 -6.4716 17 1 10.4013 0.5520 -4.1515 18 6 4.1085 -1.5849 -0.2683 19 6 3.9231 -0.9886 1.1311 20 1 4.3713 0.0042 1.1717 21 6 4.5880 -1.8955 2.1686 22 16 2.1412 -0.8692 1.4763 23 8 1.5796 -2.1737 1.5243 24 1 -0.3633 -1.0276 0.0089 25 1 -0.3634 0.5215 0.8854 26 1 -0.3632 0.5061 -0.8944 27 1 1.6560 -0.2453 -2.1379 28 1 1.7059 -1.7681 -1.2204 29 1 3.5051 -0.3817 -3.3463 30 1 3.8398 -2.0552 -2.8406 31 1 5.7255 -1.2621 -4.5947 32 1 8.1127 -1.5026 -6.9150 33 1 3.6263 -2.5615 -0.3127 34 1 5.1726 -1.6982 -0.4757 35 1 4.1428 -2.8894 2.1210 36 1 5.6555 -1.9652 1.9593 37 1 4.4395 -1.4781 3.1645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408353074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:58 Heat of formation + Delta-G solvation = -96.170228 kcal Electronic energy + Delta-G solvation = -19788.240911 eV Core-core repulsion = 16691.093313 eV Total energy + Delta-G solvation = -3097.147598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64939 -38.73096 -36.74504 -35.97684 -35.07548 -33.71668 -33.21287 -29.37046 -27.83486 -26.80257 -24.69077 -22.42937 -22.25445 -21.06514 -19.91101 -18.73544 -17.89751 -17.01326 -16.91486 -16.70680 -16.59187 -15.99211 -15.63824 -15.32243 -15.17016 -14.50016 -14.16144 -14.04634 -13.79998 -13.54826 -13.37343 -13.31927 -13.16302 -12.92343 -12.85705 -12.48919 -12.42189 -12.22186 -12.12473 -12.04815 -11.99146 -11.50072 -10.65349 -10.35870 -10.04279 -9.52814 -9.08690 -8.49722 -5.98788 0.70539 1.35835 1.40087 1.53084 1.63573 1.98826 2.23446 2.49092 2.90305 3.15999 3.24350 3.70604 3.72583 3.94018 4.07174 4.07938 4.18962 4.27619 4.36236 4.40927 4.52355 4.57069 4.63411 4.75471 4.88673 4.94700 5.10447 5.15551 5.19312 5.28176 5.37840 5.65867 5.94047 6.01921 6.55432 7.08552 7.50694 8.05259 8.67856 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.034535 B = 0.004289 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.565884 B = 6526.689174 C = 7052.872629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.397 4.397 3 H 0.158 0.842 4 C 0.059 3.941 5 N -0.532 5.532 6 C 0.058 3.942 7 C 0.442 3.558 8 O -0.605 6.605 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.082 0.918 12 C -0.013 4.013 13 N -0.922 5.922 14 Si 0.995 3.005 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.063 3.937 19 C -0.394 4.394 20 H 0.145 0.855 21 C -0.129 4.129 22 S 1.298 4.702 23 O -0.905 6.905 24 H 0.037 0.963 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.016 0.984 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.395 0.605 32 H 0.278 0.722 33 H 0.006 0.994 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 4.897 12.774 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.515 4.515 3 H 0.176 0.824 4 C -0.070 4.070 5 N -0.256 5.256 6 C -0.073 4.073 7 C 0.229 3.771 8 O -0.491 6.491 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.100 0.900 12 C -0.213 4.213 13 N -0.563 5.563 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.194 1.194 18 C -0.065 4.065 19 C -0.511 4.511 20 H 0.163 0.837 21 C -0.188 4.188 22 S 1.496 4.504 23 O -0.901 6.901 24 H 0.056 0.944 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.034 0.966 29 H 0.136 0.864 30 H 0.072 0.928 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.024 0.976 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.013 5.227 14.139 19.914 hybrid contribution 1.112 -2.359 -3.124 4.070 sum -11.901 2.868 11.015 16.468 Atomic orbital electron populations 1.21496 0.90117 1.01906 1.05169 1.27476 1.03544 1.10881 1.09623 0.82426 1.22185 0.85695 0.98151 1.00924 1.60806 1.06522 1.54406 1.03830 1.21733 0.92825 1.00784 0.92001 1.20541 0.89646 0.83321 0.83635 1.90458 1.71464 1.51240 1.35923 1.41945 1.08720 1.58600 1.11844 1.19682 0.84684 1.43132 0.98638 0.90014 1.26072 1.04779 0.96274 0.94176 1.69682 1.38726 1.45380 1.02554 0.84903 0.76709 0.78702 0.77890 1.19822 1.19532 1.19441 1.22054 1.01184 0.91429 0.91869 1.27445 1.19622 1.06883 0.97171 0.83739 1.21474 1.00705 0.97893 0.98726 1.69492 0.83246 0.96327 1.01296 1.92966 1.72875 1.42072 1.82139 0.94397 0.88315 0.90266 0.88386 0.96591 0.86449 0.92827 0.77177 0.91299 0.97562 0.91005 0.94238 0.92439 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.40 -7.57 3.32 30.68 0.10 -7.47 16 3 H 0.16 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.06 1.56 4.72 86.47 0.41 1.96 16 5 N -0.53 -17.81 4.17 -902.11 -3.76 -21.57 16 6 C 0.06 2.11 5.45 85.56 0.47 2.58 16 7 C 0.44 21.25 7.32 87.66 0.64 21.89 16 8 O -0.61 -32.73 13.91 -3.05 -0.04 -32.78 16 9 N -0.57 -29.83 5.29 -306.99 -1.62 -31.45 16 10 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 11 H 0.08 4.91 7.16 -2.92 -0.02 4.89 16 12 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 13 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 14 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 C 0.06 2.26 4.24 86.46 0.37 2.63 16 19 C -0.39 -10.40 3.32 30.68 0.10 -10.30 16 20 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 21 C -0.13 -3.17 9.19 71.98 0.66 -2.51 16 22 S 1.30 26.58 12.61 -56.49 -0.71 25.87 16 23 O -0.90 -29.57 18.02 -148.98 -2.69 -32.26 16 24 H 0.04 0.75 8.13 -2.39 -0.02 0.73 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 2.27 7.76 -2.39 -0.02 2.25 16 28 H 0.02 0.49 7.91 -2.39 -0.02 0.47 16 29 H 0.12 3.69 7.84 -2.39 -0.02 3.68 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.39 19.67 7.90 -92.70 -0.73 18.94 16 32 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.01 0.24 7.92 -2.39 -0.02 0.22 16 34 H 0.07 3.13 5.61 -2.39 -0.01 3.11 16 35 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -77.02 313.51 -1.49 -78.51 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.33 Total: 29.50 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 4.69 Total: -10.82 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -5.10 Total: -102.99 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -2.73 Total: -65.03 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 26.58 SS G_CDS: -0.71 Total: 25.87 kcal Total: -77.02 -1.49 -78.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408353074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.656 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds