Wall clock time and date at job start Mon Mar 30 2020 01:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.62948 * 2 1 4 4 C 1.53247 * 109.62880 * 120.59330 * 2 1 3 5 5 N 1.46470 * 109.85722 * 181.70445 * 4 2 1 6 6 C 1.46905 * 110.99821 * 162.23321 * 5 4 2 7 7 C 1.50698 * 109.46842 * 60.62923 * 6 5 4 8 8 O 1.21291 * 120.00330 * 5.44199 * 7 6 5 9 9 N 1.34773 * 119.99888 * 185.44654 * 7 6 5 10 10 C 1.37100 * 120.00132 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00020 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00314 * 179.97438 * 10 9 7 13 13 N 1.31418 * 119.99821 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00474 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46761 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.47235 * 120.00100 * 14 12 10 17 17 H 1.48503 * 109.47278 * 240.00254 * 14 12 10 18 18 C 1.46470 * 112.56304 * 287.34478 * 5 4 2 19 19 C 1.53247 * 109.85696 * 72.65733 * 18 5 4 20 20 H 1.09000 * 109.79699 * 178.19936 * 19 18 5 21 21 C 1.52993 * 109.63573 * 57.70139 * 19 18 5 22 22 S 1.81893 * 109.62896 * 239.60611 * 2 1 3 23 23 O 1.42107 * 109.47005 * 73.14908 * 22 2 1 24 24 H 1.09001 * 109.47276 * 180.39205 * 1 2 3 25 25 H 1.08994 * 109.47183 * 60.39067 * 1 2 3 26 26 H 1.09005 * 109.46991 * 300.39107 * 1 2 3 27 27 H 1.08999 * 109.40930 * 301.82901 * 4 2 1 28 28 H 1.09003 * 109.40418 * 61.59049 * 4 2 1 29 29 H 1.09001 * 109.46898 * 180.62510 * 6 5 4 30 30 H 1.08998 * 109.47476 * 300.62601 * 6 5 4 31 31 H 0.96997 * 120.00155 * 359.97438 * 9 7 6 32 32 H 0.96999 * 119.99875 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.40097 * 312.54019 * 18 5 4 34 34 H 1.08999 * 109.40794 * 192.77662 * 18 5 4 35 35 H 1.09000 * 109.47218 * 300.99120 * 21 19 18 36 36 H 1.09004 * 109.47056 * 60.98386 * 21 19 18 37 37 H 1.08994 * 109.47532 * 180.98605 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7346 1.2425 5 7 3.5089 -0.7024 1.2686 6 6 4.0184 -1.0089 2.6119 7 6 3.5708 -2.3901 3.0158 8 8 2.9789 -3.0918 2.2231 9 7 3.8281 -2.8455 4.2579 10 6 3.4205 -4.1018 4.6255 11 1 2.8928 -4.7263 3.9200 12 6 3.6862 -4.5716 5.9059 13 7 4.3279 -3.8114 6.7646 14 14 3.1314 -6.2836 6.4066 15 1 2.4356 -6.9318 5.2660 16 1 4.3145 -7.0950 6.7899 17 1 2.2035 -6.1851 7.5618 18 6 4.1084 -1.5857 0.2656 19 6 3.9231 -0.9868 -1.1328 20 1 4.3973 -1.6288 -1.8751 21 6 4.5512 0.4073 -1.1825 22 16 2.1411 -0.8668 -1.4778 23 8 1.9344 -0.0525 -2.6239 24 1 -0.3634 -1.0276 0.0070 25 1 -0.3633 0.5077 -0.8934 26 1 -0.3633 0.5199 0.8865 27 1 1.6558 -0.2491 2.1375 28 1 1.7058 -1.7703 1.2173 29 1 5.1076 -0.9673 2.6056 30 1 3.6310 -0.2790 3.3227 31 1 4.3017 -2.2845 4.8917 32 1 4.5131 -4.1392 7.6586 33 1 3.6260 -2.5621 0.3084 34 1 5.1725 -1.6993 0.4728 35 1 4.0800 1.0450 -0.4345 36 1 5.6188 0.3324 -0.9753 37 1 4.4026 0.8378 -2.1727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408353075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:02 Heat of formation + Delta-G solvation = -93.700061 kcal Electronic energy + Delta-G solvation = -20025.315573 eV Core-core repulsion = 16928.275090 eV Total energy + Delta-G solvation = -3097.040484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77722 -38.42163 -36.77466 -35.82890 -34.79654 -33.62770 -33.14166 -29.02468 -27.78542 -26.67136 -24.62327 -23.03041 -21.83009 -20.92453 -19.81708 -18.43169 -17.61399 -17.14036 -16.76458 -16.52406 -16.35390 -15.82936 -15.68109 -15.35848 -15.17562 -14.70204 -14.14773 -13.76431 -13.51892 -13.45103 -13.36514 -13.25543 -12.94745 -12.80741 -12.68327 -12.38506 -12.33776 -12.14411 -12.06965 -11.94640 -11.76059 -11.36700 -10.82392 -10.57214 -9.93137 -9.14439 -9.01265 -8.40500 -5.89094 0.65095 1.39744 1.46633 1.59312 1.59649 2.09400 2.33584 2.75086 2.93101 3.27148 3.31576 3.79978 3.90759 4.07104 4.14599 4.22689 4.36158 4.47992 4.51716 4.62941 4.72971 4.76557 4.81846 4.87865 4.97095 4.98538 5.15913 5.20486 5.22178 5.28238 5.48277 5.88215 6.08540 6.13656 6.64720 7.18355 7.63219 8.15800 8.75331 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.033259 B = 0.004494 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.665297 B = 6229.307285 C = 6452.538393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.383 4.383 3 H 0.086 0.914 4 C 0.076 3.924 5 N -0.526 5.526 6 C 0.056 3.944 7 C 0.412 3.588 8 O -0.613 6.613 9 N -0.572 5.572 10 C -0.325 4.325 11 H 0.085 0.915 12 C -0.014 4.014 13 N -0.923 5.923 14 Si 0.988 3.012 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.075 3.925 19 C -0.390 4.390 20 H 0.135 0.865 21 C -0.130 4.130 22 S 1.257 4.743 23 O -0.909 6.909 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.395 0.605 32 H 0.275 0.725 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 5.002 -9.129 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.503 4.503 3 H 0.104 0.896 4 C -0.053 4.053 5 N -0.248 5.248 6 C -0.075 4.075 7 C 0.199 3.801 8 O -0.501 6.501 9 N -0.209 5.209 10 C -0.455 4.455 11 H 0.103 0.897 12 C -0.214 4.214 13 N -0.564 5.564 14 Si 0.813 3.187 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.201 1.201 18 C -0.054 4.054 19 C -0.509 4.509 20 H 0.153 0.847 21 C -0.188 4.188 22 S 1.458 4.542 23 O -0.905 6.905 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.813 4.673 -10.427 11.767 hybrid contribution 0.971 0.825 1.319 1.834 sum -1.841 5.497 -9.108 10.797 Atomic orbital electron populations 1.21472 0.90198 1.04132 1.02914 1.27200 1.03657 1.08187 1.11236 0.89568 1.21851 0.86904 1.00433 0.96130 1.61632 1.07450 1.52133 1.03629 1.22092 1.02297 0.92077 0.91036 1.21995 0.84338 0.91213 0.82566 1.90422 1.47249 1.60622 1.51789 1.42127 1.51024 1.15348 1.12403 1.19728 1.35107 0.92871 0.97800 0.89713 1.25988 0.96816 1.03096 0.95457 1.69683 1.41255 1.38676 1.06797 0.84929 0.78016 0.77646 0.78150 1.19360 1.20174 1.20133 1.21818 1.00805 0.94999 0.87762 1.27378 1.17963 1.02511 1.03079 0.84712 1.21598 1.02354 0.94363 1.00526 1.70212 0.89621 1.13020 0.81380 1.92945 1.81852 1.73812 1.41855 0.89778 0.92495 0.90597 0.90577 0.91152 0.87177 0.87428 0.77191 0.91555 0.91081 0.90191 0.92072 0.91186 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.23 71.98 0.66 -1.98 16 2 C -0.38 -9.29 2.97 30.68 0.09 -9.20 16 3 H 0.09 2.26 7.57 -2.39 -0.02 2.24 16 4 C 0.08 2.05 4.01 86.47 0.35 2.39 16 5 N -0.53 -14.42 3.74 -902.09 -3.38 -17.79 16 6 C 0.06 1.67 5.73 85.56 0.49 2.16 16 7 C 0.41 16.64 7.20 87.66 0.63 17.27 16 8 O -0.61 -27.38 11.60 -3.06 -0.04 -27.42 16 9 N -0.57 -26.50 5.29 -306.99 -1.62 -28.12 16 10 C -0.33 -16.98 9.68 84.04 0.81 -16.17 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 13 N -0.92 -47.82 13.05 21.66 0.28 -47.54 16 14 Si 0.99 40.79 29.55 68.60 2.03 42.82 16 15 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 18 C 0.07 1.99 4.27 86.47 0.37 2.36 16 19 C -0.39 -9.25 3.47 30.67 0.11 -9.14 16 20 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 21 C -0.13 -3.24 8.86 71.98 0.64 -2.61 16 22 S 1.26 30.98 12.69 -56.49 -0.72 30.26 16 23 O -0.91 -31.74 17.81 -148.98 -2.65 -34.39 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.08 2.05 7.90 -2.39 -0.02 2.03 16 28 H 0.07 2.15 5.99 -2.39 -0.01 2.13 16 29 H 0.11 2.89 7.95 -2.39 -0.02 2.88 16 30 H 0.11 2.86 8.06 -2.39 -0.02 2.84 16 31 H 0.39 17.72 7.90 -92.71 -0.73 16.99 16 32 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.07 2.13 5.98 -2.39 -0.01 2.12 16 34 H 0.08 2.06 7.83 -2.39 -0.02 2.04 16 35 H 0.06 1.60 6.69 -2.39 -0.02 1.58 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.04 1.06 7.99 -2.39 -0.02 1.04 16 Total: -1.00 -65.81 306.00 -1.14 -66.95 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.34 Total: 30.40 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 4.62 Total: -15.16 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -4.72 Total: -93.45 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -2.69 Total: -61.81 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 30.98 SS G_CDS: -0.72 Total: 30.26 kcal Total: -65.81 -1.14 -66.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408353075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.748 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds