Wall clock time and date at job start Mon Mar 30 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47337 * 266.85037 * 3 2 1 5 5 C 1.37094 * 120.00263 * 264.14328 * 4 3 2 6 6 H 1.07999 * 119.99925 * 197.42871 * 5 4 3 7 7 C 1.38949 * 120.00026 * 17.43827 * 5 4 3 8 8 N 1.31411 * 120.00272 * 21.51888 * 7 5 4 9 9 Si 1.86806 * 119.99995 * 201.52438 * 7 5 4 10 10 H 1.48497 * 109.47036 * 89.99714 * 9 7 5 11 11 H 1.48501 * 109.47084 * 209.99783 * 9 7 5 12 12 H 1.48498 * 109.46738 * 329.99727 * 9 7 5 13 13 C 1.34780 * 119.99444 * 84.13913 * 4 3 2 14 14 O 1.21293 * 119.99517 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00195 * 0.02562 * 13 4 3 16 16 O 1.42898 * 109.46864 * 179.97438 * 15 13 4 17 17 C 1.42904 * 113.99870 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.47181 * 179.97438 * 17 16 15 19 19 C 1.38672 * 120.42182 * 270.25453 * 18 17 16 20 20 C 1.38636 * 118.42504 * 180.24236 * 19 18 17 21 21 C 1.38222 * 119.15639 * 359.75164 * 20 19 18 22 22 N 1.31858 * 120.76866 * 0.02562 * 21 20 19 23 23 C 1.31886 * 121.72326 * 359.97438 * 22 21 20 24 24 H 4.40643 * 5.51484 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.47097 * 146.85712 * 3 2 1 26 26 H 1.08996 * 109.47689 * 26.85875 * 3 2 1 27 27 H 0.96998 * 120.00405 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47189 * 59.99418 * 15 13 4 29 29 H 1.09000 * 109.46981 * 299.99465 * 15 13 4 30 30 H 1.09005 * 109.46863 * 60.00138 * 17 16 15 31 31 H 1.08995 * 109.47357 * 300.00380 * 17 16 15 32 32 H 1.08005 * 120.78895 * 359.97418 * 19 18 17 33 33 H 1.07996 * 120.42184 * 179.73297 * 20 19 18 34 34 H 1.08001 * 119.61564 * 180.02562 * 21 20 19 35 35 H 1.07995 * 119.61785 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 0.0768 1.3791 5 6 3.4766 1.2895 1.9192 6 1 4.0890 1.3313 2.8078 7 6 3.0353 2.4647 1.3236 8 7 1.9840 2.4474 0.5354 9 14 3.9367 4.0694 1.6431 10 1 5.0048 4.2479 0.6270 11 1 2.9786 5.2007 1.5581 12 1 4.5433 4.0350 2.9981 13 6 3.2471 -1.0455 2.1169 14 8 3.6519 -0.9826 3.2586 15 6 2.8714 -2.3786 1.5230 16 8 3.0773 -3.4073 2.4933 17 6 2.7488 -4.7183 2.0290 18 6 3.0034 -5.7185 3.1271 19 6 4.2450 -6.3234 3.2518 20 6 4.4322 -7.2412 4.2739 21 6 3.3840 -7.5169 5.1317 22 7 2.2178 -6.9190 4.9859 23 6 2.0040 -6.0410 4.0253 24 1 -1.0500 0.0002 0.0000 25 1 3.0090 0.8613 -0.5619 26 1 3.0098 -0.9159 -0.4643 27 1 1.6757 3.2678 0.1198 28 1 3.4920 -2.5747 0.6487 29 1 1.8223 -2.3621 1.2276 30 1 3.3663 -4.9630 1.1648 31 1 1.6970 -4.7502 1.7447 32 1 5.0458 -6.0885 2.5663 33 1 5.3847 -7.7347 4.3980 34 1 3.5218 -8.2303 5.9308 35 1 1.0353 -5.5719 3.9370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491695919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:21 Heat of formation + Delta-G solvation = 31.903426 kcal Electronic energy + Delta-G solvation = -19987.840702 eV Core-core repulsion = 16760.802843 eV Total energy + Delta-G solvation = -3227.037859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23026 -38.84060 -37.16782 -35.09938 -32.94515 -32.18279 -31.78307 -31.26260 -28.11849 -26.50109 -25.89807 -24.07193 -23.64052 -22.03675 -19.36509 -17.94840 -17.27708 -16.77836 -16.64566 -16.49734 -15.85671 -15.42591 -15.21151 -14.60698 -14.14612 -13.91067 -13.74860 -13.65829 -13.13969 -12.80980 -12.63446 -12.32580 -11.90048 -11.69587 -11.52933 -11.26590 -11.02807 -10.50553 -10.34732 -9.91125 -9.61428 -9.44802 -9.41804 -9.26363 -9.15799 -8.94815 -8.39158 -7.90719 -6.36223 -3.88936 0.96352 1.19981 3.13854 3.24267 3.28118 3.46716 3.65688 3.84370 3.97903 4.04617 4.22125 4.39355 4.69560 4.74746 4.88797 4.92145 4.99848 5.16497 5.26207 5.34397 5.39428 5.54827 5.57862 5.66457 5.70289 5.86978 6.00095 6.18759 6.22273 6.59531 6.68348 6.96594 7.28896 7.54504 7.87835 8.02352 8.40320 8.74322 9.10653 9.30529 9.86262 10.64839 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.029850 B = 0.003784 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.800103 B = 7397.320125 C = 7917.344378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.118 4.118 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.314 4.314 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.863 5.863 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.452 3.548 14 O -0.562 6.562 15 C 0.052 3.948 16 O -0.354 6.354 17 C 0.102 3.898 18 C -0.134 4.134 19 C -0.054 4.054 20 C -0.178 4.178 21 C 0.098 3.902 22 N -0.489 5.489 23 C 0.121 3.879 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.269 0.731 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -15.020 -2.756 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.120 4.120 3 C 0.107 3.893 4 N -0.160 5.160 5 C -0.441 4.441 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.750 3.250 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.240 3.760 14 O -0.444 6.444 15 C -0.027 4.027 16 O -0.273 6.273 17 C 0.024 3.976 18 C -0.136 4.136 19 C -0.080 4.080 20 C -0.197 4.197 21 C -0.059 4.059 22 N -0.197 5.197 23 C -0.036 4.036 24 H 0.217 0.783 25 H 0.130 0.870 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.172 0.828 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.897 -14.999 -1.504 15.101 hybrid contribution 0.559 1.162 -0.899 1.572 sum 1.456 -13.836 -2.403 14.119 Atomic orbital electron populations 1.24305 0.95396 1.06103 1.01736 1.23192 0.94378 0.95693 0.98690 1.18294 0.84317 1.01228 0.85494 1.43651 1.56545 1.05955 1.09881 1.19686 1.30164 0.80878 1.13407 0.87685 1.25289 0.95125 0.99450 0.97394 1.70083 1.19649 1.28812 1.31553 0.85974 0.79114 0.80786 0.79161 1.20302 1.21094 1.19357 1.19683 0.85051 0.84693 0.86588 1.90560 1.49614 1.86289 1.17915 1.22320 1.00662 0.88375 0.91392 1.88107 1.87560 1.13343 1.38240 1.21225 1.00027 0.82701 0.93636 1.20650 0.95322 0.98494 0.99099 1.21548 0.96162 0.93480 0.96800 1.22132 1.00825 0.99948 0.96842 1.22794 0.88461 0.97111 0.97546 1.67732 1.23544 1.08108 1.20316 1.22733 0.99266 0.92623 0.88967 0.78301 0.86959 0.92136 0.92095 0.91811 0.91284 0.92316 0.92076 0.84640 0.84697 0.82815 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.12 -2.56 10.88 -37.12 -0.40 -2.96 16 3 C 0.23 4.91 4.91 -6.83 -0.03 4.88 16 4 N -0.44 -11.03 2.60 -117.94 -0.31 -11.33 16 5 C -0.31 -8.62 9.33 -14.94 -0.14 -8.76 16 6 H 0.11 3.06 7.38 -52.49 -0.39 2.67 16 7 C 0.03 0.82 4.87 -17.47 -0.08 0.73 16 8 N -0.86 -22.30 9.48 55.50 0.53 -21.78 16 9 Si 0.92 20.31 29.60 -169.99 -5.03 15.27 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.45 11.24 7.64 -10.98 -0.08 11.15 16 14 O -0.56 -16.37 16.15 -14.36 -0.23 -16.60 16 15 C 0.05 0.99 5.02 36.00 0.18 1.17 16 16 O -0.35 -6.70 9.86 -55.14 -0.54 -7.24 16 17 C 0.10 1.35 6.09 36.00 0.22 1.57 16 18 C -0.13 -1.77 5.53 -104.48 -0.58 -2.34 16 19 C -0.05 -0.62 9.86 -39.27 -0.39 -1.01 16 20 C -0.18 -1.81 10.11 -39.44 -0.40 -2.21 16 21 C 0.10 1.08 11.18 -17.55 -0.20 0.89 16 22 N -0.49 -6.67 10.36 -13.25 -0.14 -6.81 16 23 C 0.12 1.63 10.86 -17.55 -0.19 1.44 16 24 H 0.20 3.23 7.80 -54.09 -0.42 2.81 16 25 H 0.11 2.52 6.44 -51.93 -0.33 2.19 16 26 H 0.06 1.04 6.69 -51.93 -0.35 0.69 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.06 1.00 7.42 -51.93 -0.39 0.61 16 29 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -34.03 314.86 -6.44 -40.47 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.93 Total: 3.30 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.53 Total: -0.02 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.08 Total: -39.92 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.78 Total: -23.84 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.03 -6.44 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491695919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.370 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds