Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42906 * 109.47003 * 45.54466 * 3 2 1 5 5 C 1.42907 * 113.99943 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46974 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47183 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99648 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00393 * 179.97438 * 7 6 5 10 10 C 1.39468 * 120.00413 * 185.07838 * 9 7 6 11 11 C 1.38589 * 119.58286 * 185.36532 * 10 9 7 12 12 C 1.40810 * 118.79789 * 179.70218 * 11 10 9 13 13 C 1.41538 * 120.99716 * 180.25167 * 12 11 10 14 14 H 1.08003 * 120.00144 * 153.74964 * 13 12 11 15 15 C 1.40034 * 120.00277 * 333.75480 * 13 12 11 16 16 N 1.30744 * 119.99801 * 350.15844 * 15 13 12 17 17 Si 1.86804 * 120.00097 * 170.15893 * 15 13 12 18 18 H 1.48499 * 109.46952 * 60.00138 * 17 15 13 19 19 H 1.48504 * 109.46895 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47029 * 299.99706 * 17 15 13 21 21 C 1.41175 * 118.00625 * 0.27658 * 12 11 10 22 22 C 1.37587 * 119.01344 * 359.97438 * 21 12 11 23 23 N 1.32083 * 121.11298 * 0.02797 * 22 21 12 24 24 H 4.38451 * 5.44479 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47117 * 285.55167 * 3 2 1 26 26 H 1.08998 * 109.47182 * 165.54475 * 3 2 1 27 27 H 1.08996 * 109.46494 * 60.00406 * 5 4 3 28 28 H 1.08999 * 109.47068 * 299.99998 * 5 4 3 29 29 H 1.09004 * 109.47112 * 60.00108 * 6 5 4 30 30 H 1.09003 * 109.47272 * 300.00227 * 6 5 4 31 31 H 0.96998 * 119.99435 * 5.08217 * 9 7 6 32 32 H 1.08003 * 120.60375 * 359.97295 * 11 10 9 33 33 H 0.96998 * 119.99806 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.49277 * 179.97438 * 21 12 11 35 35 H 1.08004 * 119.44535 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.9427 -0.9617 5 6 4.5473 -1.0207 -1.0427 6 6 4.9423 -2.0554 -2.0983 7 6 6.4446 -2.1381 -2.1832 8 8 7.1317 -1.4387 -1.4694 9 7 7.0246 -2.9901 -3.0517 10 6 8.4107 -3.1444 -3.0569 11 6 9.0073 -3.9361 -4.0253 12 6 10.4085 -4.0754 -4.0190 13 6 11.0667 -4.8682 -4.9893 14 1 12.0912 -4.6549 -5.2565 15 6 10.3895 -5.9292 -5.6031 16 7 9.2240 -6.3105 -5.1495 17 14 11.1513 -6.7996 -7.0699 18 1 12.4558 -7.3881 -6.6735 19 1 10.2419 -7.8789 -7.5321 20 1 11.3618 -5.8243 -8.1697 21 6 11.1372 -3.4008 -3.0154 22 6 10.4558 -2.6411 -2.0926 23 7 9.1398 -2.5361 -2.1331 24 1 -1.0499 -0.0001 -0.0003 25 1 3.0094 -0.2747 0.9900 26 1 3.0089 0.9959 -0.2565 27 1 4.9505 -1.3170 -0.0743 28 1 4.9493 -0.0466 -1.3211 29 1 4.5390 -1.7588 -3.0665 30 1 4.5402 -3.0297 -1.8203 31 1 6.4779 -3.4958 -3.6732 32 1 8.4088 -4.4338 -4.7740 33 1 8.7548 -7.0451 -5.5749 34 1 12.2135 -3.4800 -2.9727 35 1 11.0063 -2.1224 -1.3216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755988097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = 8.544445 kcal Electronic energy + Delta-G solvation = -19406.444594 eV Core-core repulsion = 16178.393813 eV Total energy + Delta-G solvation = -3228.050781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.70860 -38.35391 -37.64554 -34.38168 -33.74897 -33.64685 -31.52562 -30.52008 -28.62015 -27.09178 -26.02344 -23.91541 -21.98662 -21.27162 -19.66478 -18.66048 -17.70023 -17.30973 -16.49700 -16.22638 -15.64530 -15.25393 -15.04278 -14.97532 -14.21825 -13.95429 -13.50221 -13.45192 -12.88569 -12.64599 -12.58546 -12.38311 -11.65299 -11.54314 -11.42381 -11.21880 -10.93151 -10.77371 -10.63927 -10.32099 -10.18055 -9.79218 -9.70893 -9.45148 -9.39492 -8.01709 -7.77094 -7.07250 -6.77179 -4.65459 2.23458 2.50650 2.54194 2.78714 2.99699 3.02568 3.17151 3.37087 3.43542 3.83565 3.90677 4.38506 4.66637 4.84600 5.02613 5.04310 5.17527 5.23517 5.50900 5.63275 5.64466 5.76196 5.82726 5.98500 6.55179 6.61996 6.77379 6.92892 6.94453 7.10459 7.29585 7.35505 7.43523 7.74242 7.91754 8.18282 8.39483 8.67007 8.72863 8.83470 9.64792 10.07386 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032585 B = 0.003078 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.078824 B = 9096.046939 C = 9879.603915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.172 3.828 4 O -0.387 6.387 5 C 0.079 3.921 6 C -0.139 4.139 7 C 0.504 3.496 8 O -0.487 6.487 9 N -0.657 5.657 10 C 0.334 3.666 11 C -0.238 4.238 12 C 0.141 3.859 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.795 5.795 17 Si 0.916 3.084 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.282 4.282 22 C 0.117 3.883 23 N -0.554 5.554 24 H 0.221 0.779 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.410 0.590 32 H 0.134 0.866 33 H 0.282 0.718 34 H 0.102 0.898 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 5.566 3.456 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.189 4.189 3 C 0.097 3.903 4 O -0.307 6.307 5 C 0.003 3.997 6 C -0.180 4.180 7 C 0.288 3.712 8 O -0.358 6.358 9 N -0.303 5.303 10 C 0.109 3.891 11 C -0.263 4.263 12 C 0.133 3.867 13 C -0.485 4.485 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.421 5.421 17 Si 0.740 3.260 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.305 4.305 22 C -0.037 4.037 23 N -0.273 5.273 24 H 0.238 0.762 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.245 0.755 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.120 6.322 4.501 14.391 hybrid contribution 0.401 -1.256 -1.483 1.985 sum -11.718 5.065 3.017 13.118 Atomic orbital electron populations 1.24951 0.95873 0.99531 0.99471 1.22629 0.93965 1.01116 1.01144 1.19056 0.84480 0.93538 0.93247 1.87862 1.22122 1.61043 1.59694 1.22176 0.79211 0.99180 0.99161 1.21485 0.93367 1.01695 1.01427 1.20348 0.89341 0.80612 0.80881 1.90779 1.64543 1.40044 1.40399 1.43414 1.05989 1.43239 1.37642 1.18205 0.82678 0.94874 0.93304 1.21681 0.96430 1.06057 1.02173 1.17595 0.91008 0.88324 0.89819 1.19552 0.99613 1.11001 1.18370 0.90076 1.25956 0.94456 0.96677 0.97225 1.69728 1.13009 1.23214 1.36189 0.86244 0.79794 0.78952 0.81022 1.18904 1.20245 1.18775 1.21930 0.99400 1.08817 1.00398 1.21755 0.89301 0.95914 0.96760 1.67178 1.07081 1.27168 1.25920 0.76204 0.90610 0.90629 0.91861 0.91942 0.88264 0.88148 0.75529 0.84882 0.90714 0.87935 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.19 -2.03 13.73 -37.12 -0.51 -2.54 16 3 C 0.17 1.75 6.41 34.37 0.22 1.97 16 4 O -0.39 -4.85 10.30 -35.23 -0.36 -5.21 16 5 C 0.08 1.00 5.23 37.16 0.19 1.19 16 6 C -0.14 -1.79 6.07 -27.89 -0.17 -1.96 16 7 C 0.50 9.10 7.78 -10.99 -0.09 9.02 16 8 O -0.49 -10.72 14.27 5.56 0.08 -10.64 16 9 N -0.66 -12.58 5.39 -11.49 -0.06 -12.64 16 10 C 0.33 8.02 7.40 -154.70 -1.15 6.87 16 11 C -0.24 -5.98 8.61 -38.48 -0.33 -6.31 16 12 C 0.14 3.68 5.60 -106.55 -0.60 3.08 16 13 C -0.45 -11.57 9.14 -37.65 -0.34 -11.91 16 14 H 0.08 1.97 7.87 -52.48 -0.41 1.56 16 15 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 16 N -0.80 -19.37 10.70 55.55 0.59 -18.78 16 17 Si 0.92 17.82 29.57 -169.99 -5.03 12.79 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 C -0.28 -6.87 9.90 -38.70 -0.38 -7.25 16 22 C 0.12 2.79 11.15 -17.68 -0.20 2.60 16 23 N -0.55 -14.03 7.89 -12.52 -0.10 -14.13 16 24 H 0.22 1.10 7.80 -54.09 -0.42 0.68 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.41 6.40 8.70 -40.82 -0.36 6.04 16 32 H 0.13 3.32 6.11 -52.48 -0.32 2.99 16 33 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 34 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 35 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -31.90 318.68 -6.97 -38.87 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.02 Total: 9.54 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.87 Total: -4.60 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.43 Total: -45.55 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.28 Total: -15.85 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.90 -6.97 -38.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755988097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.413 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds