Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42906 * 109.47003 * 45.54466 * 3 2 1 5 5 C 1.42907 * 113.99943 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46974 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47183 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99648 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00393 * 179.97438 * 7 6 5 10 10 C 1.39468 * 120.00413 * 185.07838 * 9 7 6 11 11 C 1.38589 * 119.58286 * 185.36532 * 10 9 7 12 12 C 1.40810 * 118.79789 * 179.70218 * 11 10 9 13 13 C 1.41538 * 120.99716 * 180.25167 * 12 11 10 14 14 H 1.08003 * 120.00144 * 153.74964 * 13 12 11 15 15 C 1.40034 * 120.00277 * 333.75480 * 13 12 11 16 16 N 1.30744 * 119.99801 * 350.15844 * 15 13 12 17 17 Si 1.86804 * 120.00097 * 170.15893 * 15 13 12 18 18 H 1.48499 * 109.46952 * 60.00138 * 17 15 13 19 19 H 1.48504 * 109.46895 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47029 * 299.99706 * 17 15 13 21 21 C 1.41175 * 118.00625 * 0.27658 * 12 11 10 22 22 C 1.37587 * 119.01344 * 359.97438 * 21 12 11 23 23 N 1.32083 * 121.11298 * 0.02797 * 22 21 12 24 24 H 4.38451 * 5.44479 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47117 * 285.55167 * 3 2 1 26 26 H 1.08998 * 109.47182 * 165.54475 * 3 2 1 27 27 H 1.08996 * 109.46494 * 60.00406 * 5 4 3 28 28 H 1.08999 * 109.47068 * 299.99998 * 5 4 3 29 29 H 1.09004 * 109.47112 * 60.00108 * 6 5 4 30 30 H 1.09003 * 109.47272 * 300.00227 * 6 5 4 31 31 H 0.96998 * 119.99435 * 5.08217 * 9 7 6 32 32 H 1.08003 * 120.60375 * 359.97295 * 11 10 9 33 33 H 0.96998 * 119.99806 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.49277 * 179.97438 * 21 12 11 35 35 H 1.08004 * 119.44535 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.9427 -0.9617 5 6 4.5473 -1.0207 -1.0427 6 6 4.9423 -2.0554 -2.0983 7 6 6.4446 -2.1381 -2.1832 8 8 7.1317 -1.4387 -1.4694 9 7 7.0246 -2.9901 -3.0517 10 6 8.4107 -3.1444 -3.0569 11 6 9.0073 -3.9361 -4.0253 12 6 10.4085 -4.0754 -4.0190 13 6 11.0667 -4.8682 -4.9893 14 1 12.0912 -4.6549 -5.2565 15 6 10.3895 -5.9292 -5.6031 16 7 9.2240 -6.3105 -5.1495 17 14 11.1513 -6.7996 -7.0699 18 1 12.4558 -7.3881 -6.6735 19 1 10.2419 -7.8789 -7.5321 20 1 11.3618 -5.8243 -8.1697 21 6 11.1372 -3.4008 -3.0154 22 6 10.4558 -2.6411 -2.0926 23 7 9.1398 -2.5361 -2.1331 24 1 -1.0499 -0.0001 -0.0003 25 1 3.0094 -0.2747 0.9900 26 1 3.0089 0.9959 -0.2565 27 1 4.9505 -1.3170 -0.0743 28 1 4.9493 -0.0466 -1.3211 29 1 4.5390 -1.7588 -3.0665 30 1 4.5402 -3.0297 -1.8203 31 1 6.4779 -3.4958 -3.6732 32 1 8.4088 -4.4338 -4.7740 33 1 8.7548 -7.0451 -5.5749 34 1 12.2135 -3.4800 -2.9727 35 1 11.0063 -2.1224 -1.3216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755988097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -11.313753 kcal Electronic energy + Delta-G solvation = -19407.305710 eV Core-core repulsion = 16178.393813 eV Total energy + Delta-G solvation = -3228.911897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29124 -39.74829 -38.93274 -36.14131 -35.47786 -34.43905 -32.71487 -32.32553 -30.30885 -27.97681 -27.88057 -25.14365 -23.83004 -22.87364 -21.21703 -19.48488 -19.41997 -18.52218 -17.76718 -17.46014 -17.08198 -16.85723 -16.23592 -16.05134 -15.95293 -15.66545 -15.04436 -14.74645 -14.44525 -14.32777 -13.98208 -13.59294 -13.18140 -12.86544 -12.71067 -12.64544 -12.49758 -12.08859 -11.92001 -11.54201 -11.50113 -11.44343 -11.18004 -11.02540 -10.57334 -9.93438 -9.62582 -8.87916 -8.57974 -6.57979 0.72985 1.00625 1.41878 1.43262 1.52920 1.56047 1.82441 1.85902 2.11896 2.20929 2.82829 2.95797 3.56975 3.68046 3.73930 4.04714 4.05379 4.28474 4.34096 4.44439 4.53209 4.76169 4.77511 4.82931 4.86318 4.92501 5.03082 5.10034 5.24541 5.48031 5.64336 5.92466 6.05128 6.14525 6.47102 6.59736 6.60044 6.79327 6.84000 7.27818 7.82250 8.29159 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032585 B = 0.003078 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.078824 B = 9096.046939 C = 9879.603915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.398 6.398 5 C 0.084 3.916 6 C -0.124 4.124 7 C 0.503 3.497 8 O -0.528 6.528 9 N -0.651 5.651 10 C 0.331 3.669 11 C -0.257 4.257 12 C 0.110 3.890 13 C -0.484 4.484 14 H 0.083 0.917 15 C 0.036 3.964 16 N -0.817 5.817 17 Si 0.990 3.010 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.296 4.296 22 C 0.112 3.888 23 N -0.578 5.578 24 H 0.255 0.745 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.425 0.575 32 H 0.130 0.870 33 H 0.292 0.708 34 H 0.116 0.884 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 5.120 2.777 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.318 6.318 5 C 0.008 3.992 6 C -0.164 4.164 7 C 0.290 3.710 8 O -0.402 6.402 9 N -0.299 5.299 10 C 0.105 3.895 11 C -0.282 4.282 12 C 0.102 3.898 13 C -0.514 4.514 14 H 0.101 0.899 15 C -0.180 4.180 16 N -0.443 5.443 17 Si 0.810 3.190 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.320 4.320 22 C -0.042 4.042 23 N -0.298 5.298 24 H 0.271 0.729 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.263 0.737 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.536 5.877 3.827 15.245 hybrid contribution 0.735 -1.091 -1.215 1.791 sum -12.801 4.786 2.612 13.914 Atomic orbital electron populations 1.25864 0.96772 0.97538 0.97469 1.23056 0.94798 1.03030 1.03062 1.19238 0.84732 0.93681 0.93289 1.87817 1.21560 1.61904 1.60560 1.22045 0.79596 0.98892 0.98711 1.21402 0.88917 1.03042 1.03023 1.21221 0.91344 0.79083 0.79353 1.90756 1.66083 1.41530 1.41800 1.43463 1.04382 1.43680 1.38370 1.18462 0.84635 0.93884 0.92473 1.21674 0.96373 1.07199 1.02960 1.18047 0.91963 0.89090 0.90688 1.19847 1.00155 1.12058 1.19372 0.89874 1.26821 0.94813 0.96832 0.99548 1.69767 1.13900 1.23566 1.37055 0.85128 0.78973 0.77826 0.77050 1.18559 1.19001 1.18406 1.22114 1.00154 1.09213 1.00488 1.22219 0.89321 0.95566 0.97110 1.67314 1.07765 1.28029 1.26666 0.72860 0.89587 0.89463 0.92519 0.92257 0.85712 0.86122 0.73706 0.85232 0.89734 0.86593 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 19.25 74.32 1.43 -1.08 16 2 C -0.24 -4.86 13.73 31.12 0.43 -4.43 16 3 C 0.17 3.23 6.41 70.18 0.45 3.68 16 4 O -0.40 -9.45 10.30 -148.98 -1.53 -10.99 16 5 C 0.08 2.04 5.23 71.98 0.38 2.41 16 6 C -0.12 -2.96 6.07 29.85 0.18 -2.78 16 7 C 0.50 17.85 7.78 87.66 0.68 18.54 16 8 O -0.53 -23.35 14.27 -3.02 -0.04 -23.40 16 9 N -0.65 -24.74 5.39 -308.67 -1.66 -26.40 16 10 C 0.33 16.09 7.40 132.75 0.98 17.08 16 11 C -0.26 -13.15 8.61 22.98 0.20 -12.96 16 12 C 0.11 5.89 5.60 -21.12 -0.12 5.77 16 13 C -0.48 -24.93 9.14 23.52 0.21 -24.72 16 14 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 15 C 0.04 1.71 5.31 85.29 0.45 2.17 16 16 N -0.82 -39.66 10.70 21.84 0.23 -39.42 16 17 Si 0.99 35.75 29.57 68.60 2.03 37.78 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 19 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 20 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 21 C -0.30 -14.67 9.90 22.84 0.23 -14.44 16 22 C 0.11 5.37 11.15 84.50 0.94 6.31 16 23 N -0.58 -29.57 7.89 -193.54 -1.53 -31.10 16 24 H 0.26 1.68 7.80 -4.42 -0.03 1.64 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 28 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 29 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.42 12.95 8.70 -92.71 -0.81 12.15 16 32 H 0.13 6.59 6.11 -2.91 -0.02 6.57 16 33 H 0.29 12.68 8.29 -92.71 -0.77 11.91 16 34 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16 35 H 0.15 6.18 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -69.36 318.68 4.25 -65.11 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.31 Total: 32.88 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 6.45 Total: -4.46 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -2.96 Total: -96.93 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.58 Total: -34.38 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -69.36 4.25 -65.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755988097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.795 kcal (2) G-P(sol) polarization free energy of solvation -69.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds