Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47195 * 39.33177 * 3 2 1 5 5 C 1.35970 * 117.00118 * 180.02562 * 4 3 2 6 6 C 1.38715 * 119.98557 * 359.72018 * 5 4 3 7 7 C 1.38104 * 120.01497 * 179.77114 * 6 5 4 8 8 C 1.38834 * 119.98349 * 0.51109 * 7 6 5 9 9 N 1.40142 * 120.01323 * 179.72369 * 8 7 6 10 10 C 1.34781 * 120.00296 * 213.29283 * 9 8 7 11 11 O 1.21588 * 119.99511 * 5.31617 * 10 9 8 12 12 N 1.34773 * 120.00056 * 185.31901 * 10 9 8 13 13 C 1.46500 * 119.99537 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46798 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00122 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00309 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46686 * 60.00549 * 18 16 14 20 20 H 1.48503 * 109.47166 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47102 * 300.00364 * 18 16 14 22 22 C 1.38834 * 119.97300 * 359.74345 * 8 7 6 23 23 C 1.38098 * 119.98799 * 0.02562 * 22 8 7 24 24 H 4.38450 * 5.44316 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.46727 * 279.33102 * 3 2 1 26 26 H 1.08991 * 109.46839 * 159.33099 * 3 2 1 27 27 H 1.08001 * 119.99015 * 0.02562 * 6 5 4 28 28 H 1.07994 * 120.00297 * 180.23184 * 7 6 5 29 29 H 0.97003 * 120.00108 * 33.29526 * 9 8 7 30 30 H 0.97002 * 120.00057 * 359.97438 * 12 10 9 31 31 H 1.09000 * 109.47255 * 299.99428 * 13 12 10 32 32 H 1.09000 * 109.47694 * 60.00069 * 13 12 10 33 33 H 0.96995 * 120.00378 * 179.97438 * 17 16 14 34 34 H 1.07996 * 120.01018 * 179.97438 * 22 8 7 35 35 H 1.07995 * 119.99987 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.0412 -0.8539 5 6 4.4709 -1.1788 -0.9664 6 6 5.3153 -0.3239 -0.2732 7 6 6.6846 -0.4661 -0.3833 8 6 7.2160 -1.4581 -1.1963 9 7 8.6054 -1.5992 -1.3131 10 6 9.1457 -2.0093 -2.4777 11 8 8.4386 -2.1639 -3.4548 12 7 10.4696 -2.2482 -2.5593 13 6 11.0568 -2.6934 -3.8254 14 6 12.5411 -2.8870 -3.6501 15 1 13.0008 -2.6977 -2.6914 16 6 13.3119 -3.3067 -4.7134 17 7 12.7520 -3.5378 -5.8809 18 14 15.1516 -3.5473 -4.4960 19 1 15.3964 -4.5716 -3.4491 20 1 15.7469 -3.9985 -5.7795 21 1 15.7739 -2.2626 -4.0869 22 6 6.3704 -2.3099 -1.8941 23 6 5.0013 -2.1698 -1.7794 24 1 -1.0498 -0.0001 -0.0003 25 1 3.0094 -0.1658 1.0141 26 1 3.0089 0.9623 -0.3627 27 1 4.9017 0.4503 0.3560 28 1 7.3417 0.1971 0.1594 29 1 9.1783 -1.4017 -0.5556 30 1 11.0336 -2.1246 -1.7799 31 1 10.6001 -3.6364 -4.1261 32 1 10.8771 -1.9415 -4.5938 33 1 13.2943 -3.8327 -6.6290 34 1 6.7831 -3.0815 -2.5270 35 1 4.3434 -2.8321 -2.3223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785794713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -4.802553 kcal Electronic energy + Delta-G solvation = -19205.858846 eV Core-core repulsion = 15977.229296 eV Total energy + Delta-G solvation = -3228.629550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68375 -40.72812 -38.59971 -36.19326 -35.48613 -34.41560 -34.11768 -32.05144 -30.28946 -28.98958 -28.05152 -24.94707 -23.99239 -23.09255 -21.78903 -19.99043 -19.30181 -19.25348 -18.61370 -17.94079 -16.99555 -16.86706 -16.75920 -16.39656 -15.89387 -15.48057 -15.06126 -14.86499 -14.47306 -14.10840 -14.01343 -13.93053 -13.87752 -13.44840 -12.92780 -12.79807 -12.65525 -12.22929 -12.09840 -11.56438 -11.49855 -11.36127 -11.16703 -10.80661 -10.78614 -9.97542 -9.87671 -8.65056 -8.27779 -6.44461 0.35634 0.36596 1.30443 1.44330 1.48820 1.56637 1.76217 1.78223 2.12017 2.39914 2.68099 2.84175 3.07256 3.42680 3.46511 3.85614 3.96987 4.14502 4.34249 4.35155 4.44020 4.61779 4.88300 4.96161 5.03560 5.08043 5.26232 5.29499 5.35444 5.44912 5.52300 5.66278 5.83690 5.88081 6.21761 6.42148 6.55179 6.66524 7.19895 7.26525 7.62384 8.84149 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.072062 B = 0.002576 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.459763 B =10866.128075 C =11149.937922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.245 4.245 3 C 0.164 3.836 4 O -0.331 6.331 5 C 0.104 3.896 6 C -0.176 4.176 7 C -0.099 4.099 8 C 0.120 3.880 9 N -0.671 5.671 10 C 0.690 3.310 11 O -0.629 6.629 12 N -0.716 5.716 13 C 0.285 3.715 14 C -0.556 4.556 15 H 0.086 0.914 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.104 4.104 23 C -0.142 4.142 24 H 0.256 0.744 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.170 0.830 28 H 0.164 0.836 29 H 0.423 0.577 30 H 0.408 0.592 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.269 0.731 34 H 0.111 0.889 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 8.988 18.131 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.245 4.245 3 C 0.091 3.909 4 O -0.246 6.246 5 C 0.058 3.942 6 C -0.195 4.195 7 C -0.119 4.119 8 C 0.026 3.974 9 N -0.321 5.321 10 C 0.390 3.610 11 O -0.510 6.510 12 N -0.369 5.369 13 C 0.162 3.838 14 C -0.594 4.594 15 H 0.104 0.896 16 C -0.197 4.197 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.125 4.125 23 C -0.161 4.161 24 H 0.272 0.728 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.188 0.812 28 H 0.182 0.818 29 H 0.262 0.738 30 H 0.243 0.757 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.596 8.650 16.955 25.921 hybrid contribution 1.192 -0.255 -0.014 1.219 sum -16.404 8.395 16.941 25.031 Atomic orbital electron populations 1.25917 0.96829 0.96444 0.97265 1.22855 0.94592 1.03741 1.03356 1.19564 0.84804 0.91013 0.95565 1.86079 1.19287 1.53719 1.65485 1.18896 0.82041 0.96235 0.96995 1.21349 0.92886 1.01784 1.03514 1.20964 0.95541 0.95639 0.99764 1.17715 0.81923 0.96946 1.00859 1.42394 1.05734 1.70715 1.13281 1.16289 0.82868 0.78500 0.83347 1.90872 1.61547 1.60713 1.37850 1.45310 1.05580 1.70290 1.15718 1.18457 0.92689 0.92345 0.80347 1.21572 0.91939 1.47412 0.98466 0.89634 1.26073 1.05005 0.94245 0.94332 1.70136 1.38555 1.45709 1.02472 0.85182 0.77081 0.79223 0.77556 1.18674 1.21212 1.18621 1.20935 0.92673 0.99130 0.99766 1.20318 0.94040 1.00176 1.01588 0.72829 0.87385 0.87861 0.81240 0.81843 0.73795 0.75668 0.99400 0.99431 0.92243 0.87056 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 19.25 74.32 1.43 -0.48 16 2 C -0.25 -4.14 13.73 31.12 0.43 -3.71 16 3 C 0.16 2.46 5.21 70.18 0.37 2.82 16 4 O -0.33 -7.56 10.10 -93.22 -0.94 -8.51 16 5 C 0.10 2.48 6.69 22.50 0.15 2.63 16 6 C -0.18 -3.23 9.03 22.35 0.20 -3.02 16 7 C -0.10 -1.99 9.96 22.38 0.22 -1.77 16 8 C 0.12 3.48 6.28 38.10 0.24 3.72 16 9 N -0.67 -19.79 5.36 -317.07 -1.70 -21.48 16 10 C 0.69 28.64 8.30 179.05 1.49 30.12 16 11 O -0.63 -32.29 14.03 -3.99 -0.06 -32.34 16 12 N -0.72 -30.27 5.55 -482.29 -2.68 -32.95 16 13 C 0.28 15.65 5.43 85.64 0.46 16.12 16 14 C -0.56 -30.00 9.28 25.60 0.24 -29.76 16 15 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 16 C 0.00 0.17 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 18 Si 0.99 42.01 29.54 68.60 2.03 44.04 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 22 C -0.10 -3.47 8.65 22.38 0.19 -3.28 16 23 C -0.14 -4.10 9.98 22.35 0.22 -3.88 16 24 H 0.26 1.08 7.80 -4.43 -0.03 1.04 16 25 H 0.11 1.08 7.67 -2.39 -0.02 1.06 16 26 H 0.10 1.14 7.65 -2.39 -0.02 1.12 16 27 H 0.17 1.69 6.29 -2.91 -0.02 1.67 16 28 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.42 8.65 8.84 -92.71 -0.82 7.83 16 30 H 0.41 13.84 8.34 -92.71 -0.77 13.07 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.11 4.44 6.41 -2.91 -0.02 4.42 16 35 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -77.77 317.72 2.59 -75.18 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.46 Total: 21.74 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 6.11 Total: 10.14 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.09 Total: -110.24 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.00 Total: -40.85 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -77.77 2.59 -75.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785794713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.378 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds