Wall clock time and date at job start Mon Mar 30 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46551 * 2 1 4 4 C 1.53241 * 109.46949 * 240.01183 * 2 1 3 5 5 H 1.09008 * 109.57673 * 302.13268 * 4 2 1 6 6 C 1.52997 * 109.58346 * 62.40193 * 4 2 1 7 7 S 1.81740 * 108.80165 * 182.34095 * 4 2 1 8 8 O 1.42099 * 109.47146 * 170.57395 * 7 4 2 9 9 C 1.81747 * 102.30670 * 54.53700 * 7 4 2 10 10 C 1.53762 * 108.75356 * 305.34745 * 9 7 4 11 11 N 1.46378 * 109.46991 * 119.99235 * 2 1 3 12 12 C 1.34779 * 119.64528 * 5.09186 * 11 2 1 13 13 O 1.21588 * 119.99693 * 5.85287 * 12 11 2 14 14 N 1.34778 * 119.99664 * 185.85850 * 12 11 2 15 15 C 1.46503 * 119.99338 * 174.93172 * 14 12 11 16 16 C 1.50706 * 109.46713 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99718 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99870 * 179.72414 * 16 15 14 19 19 N 1.31510 * 120.00068 * 0.27184 * 18 16 15 20 20 Si 1.86802 * 119.99981 * 180.27927 * 18 16 15 21 21 H 1.48500 * 109.47190 * 59.99461 * 20 18 16 22 22 H 1.48495 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46864 * 299.99815 * 20 18 16 24 24 H 1.08998 * 109.46607 * 292.86713 * 1 2 3 25 25 H 1.09001 * 109.47186 * 52.86172 * 1 2 3 26 26 H 1.08993 * 109.47010 * 172.86783 * 1 2 3 27 27 H 1.09001 * 109.47221 * 60.00795 * 6 4 2 28 28 H 1.08997 * 109.46982 * 180.02562 * 6 4 2 29 29 H 1.08993 * 109.47696 * 300.00627 * 6 4 2 30 30 H 1.08995 * 109.58114 * 65.25115 * 9 7 4 31 31 H 1.09000 * 109.58337 * 185.66988 * 9 7 4 32 32 H 1.08998 * 109.60853 * 297.91180 * 10 9 7 33 33 H 1.08990 * 109.60989 * 177.74890 * 10 9 7 34 34 H 0.96991 * 120.00162 * 354.92875 * 14 12 11 35 35 H 1.08998 * 109.47505 * 59.99772 * 15 14 12 36 36 H 1.08998 * 109.47403 * 299.99501 * 15 14 12 37 37 H 0.96998 * 119.99956 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0408 -0.7221 -1.2514 5 1 1.6475 -1.7386 -1.2726 6 6 1.5821 0.0314 -2.5014 7 16 3.8567 -0.7727 -1.1983 8 8 4.3373 -1.6226 -2.2307 9 6 4.1758 -1.5418 0.4172 10 6 3.4484 -0.7315 1.5028 11 7 2.0179 -0.6899 1.1953 12 6 1.1401 -1.2885 2.0245 13 8 -0.0369 -1.3463 1.7249 14 7 1.5670 -1.8229 3.1858 15 6 0.5994 -2.3744 4.1377 16 6 1.3290 -2.9058 5.3445 17 1 2.4057 -2.8398 5.3969 18 6 0.6216 -3.4716 6.3839 19 7 -0.6895 -3.5524 6.3199 20 14 1.5254 -4.1233 7.8833 21 1 2.2823 -3.0180 8.5241 22 1 0.5442 -4.6768 8.8508 23 1 2.4681 -5.1926 7.4669 24 1 -0.3632 0.3994 0.9469 25 1 -0.3633 0.6204 -0.8192 26 1 -0.3633 -1.0196 -0.1276 27 1 1.9803 1.0458 -2.4807 28 1 1.9459 -0.4840 -3.3902 29 1 0.4930 0.0690 -2.5239 30 1 3.8049 -2.5667 0.4134 31 1 5.2472 -1.5394 0.6177 32 1 3.8442 0.2838 1.5283 33 1 3.5977 -1.2039 2.4736 34 1 2.5147 -1.8425 3.3913 35 1 0.0441 -3.1837 3.6637 36 1 -0.0928 -1.5913 4.4469 37 1 -1.1871 -3.9507 7.0510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:33 Heat of formation + Delta-G solvation = -42.787091 kcal Electronic energy + Delta-G solvation = -19959.891308 eV Core-core repulsion = 16865.058577 eV Total energy + Delta-G solvation = -3094.832732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19520 -36.61716 -35.77299 -34.90416 -33.79252 -32.21770 -30.55568 -28.81005 -26.88960 -25.01892 -23.54502 -22.60427 -21.10175 -19.48447 -18.06985 -17.37582 -16.38137 -15.93760 -15.83732 -15.32963 -14.90525 -14.80026 -14.61759 -14.02331 -13.61209 -13.16767 -13.07421 -12.86489 -12.32495 -12.28718 -12.19923 -11.94637 -11.81261 -11.71533 -11.61794 -11.35804 -11.01966 -10.97853 -10.87733 -10.28210 -9.85044 -9.41358 -8.75800 -8.63834 -8.53688 -8.37973 -7.80976 -6.18277 -4.25253 1.40065 2.37656 3.00032 3.23510 3.28812 3.30209 3.58454 3.80809 4.27216 4.48319 4.53196 4.82748 4.86438 4.93733 5.06542 5.15187 5.17934 5.32248 5.48089 5.56638 5.61655 5.75333 5.87203 5.88165 6.02492 6.41532 6.58018 6.96221 7.00438 7.45847 7.48512 7.53002 7.78089 7.98055 8.70456 8.83795 9.25928 9.43381 10.91850 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.004530 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.671259 B = 6179.807021 C = 6858.372463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.190 3.810 3 H 0.085 0.915 4 C -0.419 4.419 5 H 0.095 0.905 6 C -0.124 4.124 7 S 1.235 4.765 8 O -0.856 6.856 9 C -0.460 4.460 10 C 0.135 3.865 11 N -0.645 5.645 12 C 0.693 3.307 13 O -0.584 6.584 14 N -0.730 5.730 15 C 0.266 3.734 16 C -0.544 4.544 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.276 1.276 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.385 0.615 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 11.773 -12.546 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.085 3.915 3 H 0.103 0.897 4 C -0.538 4.538 5 H 0.114 0.886 6 C -0.183 4.183 7 S 1.434 4.566 8 O -0.851 6.851 9 C -0.598 4.598 10 C 0.010 3.990 11 N -0.385 5.385 12 C 0.395 3.605 13 O -0.463 6.463 14 N -0.384 5.384 15 C 0.145 3.855 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.201 1.201 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.220 0.780 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.396 11.931 -13.296 20.184 hybrid contribution 0.087 -2.758 1.169 2.997 sum 9.484 9.172 -12.127 17.920 Atomic orbital electron populations 1.22237 0.91649 1.03576 1.01208 1.20571 0.97081 0.93682 0.80150 0.89714 1.27896 1.18930 1.05771 1.01220 0.88646 1.21428 1.02973 0.99609 0.94280 1.70220 0.87560 1.15142 0.83647 1.93097 1.72754 1.71010 1.48275 1.28108 1.06947 1.09070 1.15713 1.21183 0.80152 1.00232 0.97436 1.47402 1.05793 1.59354 1.25907 1.16181 0.84846 0.78812 0.80700 1.90942 1.16002 1.64252 1.75066 1.46075 1.11336 1.62636 1.18386 1.18982 0.87436 0.93724 0.85332 1.21168 0.93509 1.41036 1.02491 0.92110 1.24931 0.94868 0.95538 0.98563 1.69961 1.05817 1.43611 1.32837 0.86479 0.79307 0.79202 0.81935 1.20034 1.21044 1.20131 0.90644 0.94477 0.90443 0.91298 0.92304 0.90804 0.88979 0.85937 0.89461 0.88903 0.77997 0.95774 0.95702 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 7.07 37.16 0.26 -1.58 16 2 C 0.19 2.21 2.82 -67.87 -0.19 2.02 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.42 -4.62 2.80 -26.61 -0.07 -4.69 16 5 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 6 C -0.12 -1.09 8.93 37.16 0.33 -0.76 16 7 S 1.23 11.89 13.09 -107.50 -1.41 10.49 16 8 O -0.86 -13.75 18.14 -35.23 -0.64 -14.39 16 9 C -0.46 -4.56 6.67 37.55 0.25 -4.31 16 10 C 0.14 1.36 6.26 -3.71 -0.02 1.33 16 11 N -0.65 -8.96 2.78 -171.38 -0.48 -9.44 16 12 C 0.69 13.54 8.06 -86.91 -0.70 12.84 16 13 O -0.58 -13.38 11.64 5.29 0.06 -13.32 16 14 N -0.73 -15.15 5.45 -66.41 -0.36 -15.51 16 15 C 0.27 6.99 5.43 -5.19 -0.03 6.96 16 16 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 17 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 20 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.07 1.27 6.68 -51.93 -0.35 0.92 16 25 H 0.04 0.42 6.89 -51.93 -0.36 0.06 16 26 H 0.08 1.36 6.64 -51.93 -0.34 1.01 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.65 6.67 -51.93 -0.35 0.31 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.99 5.41 -51.93 -0.28 0.71 16 34 H 0.38 6.85 5.68 -40.82 -0.23 6.62 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -36.79 305.17 -8.35 -45.14 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.25 Total: 3.38 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.59 Total: -1.41 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.10 Total: -50.12 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.58 Total: -27.71 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 11.89 SS G_CDS: -1.41 Total: 10.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.79 -8.35 -45.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.348 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds