Wall clock time and date at job start Mon Mar 30 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46551 * 2 1 4 4 C 1.53241 * 109.46949 * 240.01183 * 2 1 3 5 5 H 1.09008 * 109.57673 * 302.13268 * 4 2 1 6 6 C 1.52997 * 109.58346 * 62.40193 * 4 2 1 7 7 S 1.81740 * 108.80165 * 182.34095 * 4 2 1 8 8 O 1.42099 * 109.47146 * 170.57395 * 7 4 2 9 9 C 1.81747 * 102.30670 * 54.53700 * 7 4 2 10 10 C 1.53762 * 108.75356 * 305.34745 * 9 7 4 11 11 N 1.46378 * 109.46991 * 119.99235 * 2 1 3 12 12 C 1.34779 * 119.64528 * 5.09186 * 11 2 1 13 13 O 1.21588 * 119.99693 * 5.85287 * 12 11 2 14 14 N 1.34778 * 119.99664 * 185.85850 * 12 11 2 15 15 C 1.46503 * 119.99338 * 174.93172 * 14 12 11 16 16 C 1.50706 * 109.46713 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99718 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99870 * 179.72414 * 16 15 14 19 19 N 1.31510 * 120.00068 * 0.27184 * 18 16 15 20 20 Si 1.86802 * 119.99981 * 180.27927 * 18 16 15 21 21 H 1.48500 * 109.47190 * 59.99461 * 20 18 16 22 22 H 1.48495 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46864 * 299.99815 * 20 18 16 24 24 H 1.08998 * 109.46607 * 292.86713 * 1 2 3 25 25 H 1.09001 * 109.47186 * 52.86172 * 1 2 3 26 26 H 1.08993 * 109.47010 * 172.86783 * 1 2 3 27 27 H 1.09001 * 109.47221 * 60.00795 * 6 4 2 28 28 H 1.08997 * 109.46982 * 180.02562 * 6 4 2 29 29 H 1.08993 * 109.47696 * 300.00627 * 6 4 2 30 30 H 1.08995 * 109.58114 * 65.25115 * 9 7 4 31 31 H 1.09000 * 109.58337 * 185.66988 * 9 7 4 32 32 H 1.08998 * 109.60853 * 297.91180 * 10 9 7 33 33 H 1.08990 * 109.60989 * 177.74890 * 10 9 7 34 34 H 0.96991 * 120.00162 * 354.92875 * 14 12 11 35 35 H 1.08998 * 109.47505 * 59.99772 * 15 14 12 36 36 H 1.08998 * 109.47403 * 299.99501 * 15 14 12 37 37 H 0.96998 * 119.99956 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0408 -0.7221 -1.2514 5 1 1.6475 -1.7386 -1.2726 6 6 1.5821 0.0314 -2.5014 7 16 3.8567 -0.7727 -1.1983 8 8 4.3373 -1.6226 -2.2307 9 6 4.1758 -1.5418 0.4172 10 6 3.4484 -0.7315 1.5028 11 7 2.0179 -0.6899 1.1953 12 6 1.1401 -1.2885 2.0245 13 8 -0.0369 -1.3463 1.7249 14 7 1.5670 -1.8229 3.1858 15 6 0.5994 -2.3744 4.1377 16 6 1.3290 -2.9058 5.3445 17 1 2.4057 -2.8398 5.3969 18 6 0.6216 -3.4716 6.3839 19 7 -0.6895 -3.5524 6.3199 20 14 1.5254 -4.1233 7.8833 21 1 2.2823 -3.0180 8.5241 22 1 0.5442 -4.6768 8.8508 23 1 2.4681 -5.1926 7.4669 24 1 -0.3632 0.3994 0.9469 25 1 -0.3633 0.6204 -0.8192 26 1 -0.3633 -1.0196 -0.1276 27 1 1.9803 1.0458 -2.4807 28 1 1.9459 -0.4840 -3.3902 29 1 0.4930 0.0690 -2.5239 30 1 3.8049 -2.5667 0.4134 31 1 5.2472 -1.5394 0.6177 32 1 3.8442 0.2838 1.5283 33 1 3.5977 -1.2039 2.4736 34 1 2.5147 -1.8425 3.3913 35 1 0.0441 -3.1837 3.6637 36 1 -0.0928 -1.5913 4.4469 37 1 -1.1871 -3.9507 7.0510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:32 Heat of formation + Delta-G solvation = -72.385681 kcal Electronic energy + Delta-G solvation = -19961.174800 eV Core-core repulsion = 16865.058577 eV Total energy + Delta-G solvation = -3096.116223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.57611 -37.93508 -36.90479 -36.42477 -35.27632 -34.01084 -31.56649 -30.12781 -28.65855 -26.08241 -24.84864 -24.16270 -22.22522 -21.05193 -19.37202 -18.45627 -17.97486 -17.48589 -16.86223 -16.57561 -16.53298 -15.93654 -15.72031 -15.48444 -14.94612 -14.72840 -14.05455 -14.03116 -13.97766 -13.75016 -13.27328 -13.20314 -13.05093 -12.85149 -12.77146 -12.70088 -12.58617 -12.34767 -12.19247 -12.00448 -11.49259 -10.83068 -10.78423 -10.18835 -9.93492 -9.45878 -9.33681 -8.28969 -6.45632 0.56997 1.42574 1.46871 1.52768 1.54861 1.76491 2.21502 2.37841 2.72778 3.06117 3.13882 3.58061 3.89041 3.96948 4.08480 4.14285 4.34449 4.47775 4.58784 4.77920 4.78575 4.91426 4.97230 5.02570 5.06025 5.18039 5.26650 5.30990 5.45851 5.46986 5.74570 5.80801 5.86156 6.06448 6.66197 7.19877 7.25211 7.74721 8.83072 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.004530 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.671259 B = 6179.807021 C = 6858.372463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.186 3.814 3 H 0.147 0.853 4 C -0.422 4.422 5 H 0.051 0.949 6 C -0.126 4.126 7 S 1.321 4.679 8 O -0.918 6.918 9 C -0.461 4.461 10 C 0.126 3.874 11 N -0.636 5.636 12 C 0.686 3.314 13 O -0.627 6.627 14 N -0.728 5.728 15 C 0.287 3.713 16 C -0.555 4.555 17 H 0.083 0.917 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.985 3.015 21 H -0.258 1.258 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.401 0.599 35 H -0.022 1.022 36 H -0.011 1.011 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.067 13.907 -12.368 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.164 0.836 4 C -0.541 4.541 5 H 0.070 0.930 6 C -0.185 4.185 7 S 1.521 4.479 8 O -0.914 6.914 9 C -0.600 4.600 10 C 0.002 3.998 11 N -0.374 5.374 12 C 0.387 3.613 13 O -0.509 6.509 14 N -0.384 5.384 15 C 0.163 3.837 16 C -0.593 4.593 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.212 1.212 23 H -0.190 1.190 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.132 0.868 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.239 0.761 35 H -0.004 1.004 36 H 0.007 0.993 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.746 14.098 -13.177 23.126 hybrid contribution -0.976 -3.403 1.033 3.688 sum 11.770 10.695 -12.143 20.009 Atomic orbital electron populations 1.22036 0.94046 1.01177 1.00875 1.20960 0.95351 0.96348 0.79149 0.83563 1.27974 1.20188 1.03732 1.02241 0.93037 1.21522 1.03011 1.01573 0.92389 1.69373 0.84628 1.12523 0.81400 1.92977 1.74152 1.72661 1.51594 1.28173 1.09053 1.06965 1.15833 1.21658 0.77461 1.03703 0.96937 1.47475 1.06862 1.57752 1.25269 1.16471 0.85087 0.78767 0.80935 1.90946 1.18420 1.65569 1.75972 1.45681 1.11243 1.63133 1.18384 1.18353 0.87832 0.91207 0.86269 1.21561 0.94581 1.40767 1.02422 0.89947 1.26048 0.95605 0.95554 1.02246 1.70134 1.07975 1.44728 1.34115 0.85215 0.77879 0.78937 0.77222 1.18227 1.21157 1.19032 0.93556 0.91011 0.94994 0.86837 0.93299 0.91169 0.92501 0.82482 0.83321 0.89481 0.76051 1.00444 0.99333 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 7.07 71.98 0.51 -3.04 16 2 C 0.19 3.89 2.82 45.10 0.13 4.01 16 3 H 0.15 1.44 8.14 -2.38 -0.02 1.42 16 4 C -0.42 -8.69 2.80 30.67 0.09 -8.61 16 5 H 0.05 1.52 8.14 -2.38 -0.02 1.51 16 6 C -0.13 -1.92 8.93 71.98 0.64 -1.28 16 7 S 1.32 21.61 13.09 -56.49 -0.74 20.87 16 8 O -0.92 -28.21 18.14 -148.98 -2.70 -30.91 16 9 C -0.46 -7.83 6.67 72.24 0.48 -7.35 16 10 C 0.13 2.06 6.26 86.66 0.54 2.60 16 11 N -0.64 -16.75 2.78 -814.37 -2.26 -19.01 16 12 C 0.69 27.62 8.06 179.05 1.44 29.06 16 13 O -0.63 -30.79 11.64 -3.99 -0.05 -30.84 16 14 N -0.73 -31.02 5.45 -482.28 -2.63 -33.65 16 15 C 0.29 15.88 5.43 85.63 0.47 16.35 16 16 C -0.56 -30.18 9.28 25.60 0.24 -29.94 16 17 H 0.08 4.02 7.60 -2.91 -0.02 3.99 16 18 C 0.01 0.28 5.46 84.66 0.46 0.75 16 19 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 20 Si 0.98 42.09 29.54 68.60 2.03 44.11 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H 0.05 1.60 6.68 -2.39 -0.02 1.58 16 25 H 0.07 1.52 6.89 -2.39 -0.02 1.51 16 26 H 0.03 1.19 6.64 -2.39 -0.02 1.17 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.12 6.67 -2.39 -0.02 1.11 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.60 5.41 -2.39 -0.01 1.59 16 34 H 0.40 14.07 5.68 -92.71 -0.53 13.54 16 35 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -88.55 305.17 -0.52 -89.07 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.55 Total: 13.85 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.00 Total: 2.56 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -4.61 Total: -108.72 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -2.75 Total: -61.75 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 21.61 SS G_CDS: -0.74 Total: 20.87 kcal Total: -88.55 -0.52 -89.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.688 kcal (2) G-P(sol) polarization free energy of solvation -88.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds