Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46404 * 2 1 4 4 C 1.53239 * 109.46955 * 240.00127 * 2 1 3 5 5 H 1.08994 * 109.69473 * 177.79127 * 4 2 1 6 6 C 1.52997 * 109.58068 * 57.44439 * 4 2 1 7 7 S 1.81745 * 108.79569 * 297.65087 * 4 2 1 8 8 O 1.42106 * 109.46477 * 189.42141 * 7 4 2 9 9 C 1.81739 * 102.30875 * 305.46007 * 7 4 2 10 10 C 1.53278 * 108.79279 * 54.55194 * 9 7 4 11 11 N 1.46379 * 109.46405 * 302.32588 * 10 9 7 12 12 C 1.34773 * 119.64991 * 245.08847 * 11 10 9 13 13 O 1.21585 * 120.00298 * 174.94391 * 12 11 10 14 14 N 1.34779 * 119.99838 * 354.94305 * 12 11 10 15 15 C 1.46497 * 119.99981 * 185.07764 * 14 12 11 16 16 C 1.50706 * 109.47237 * 180.02562 * 15 14 12 17 17 H 1.07992 * 119.99525 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99792 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99535 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00307 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46926 * 90.00549 * 20 18 16 22 22 H 1.48502 * 109.47343 * 210.00259 * 20 18 16 23 23 H 1.48494 * 109.47391 * 330.00760 * 20 18 16 24 24 H 1.09005 * 109.47322 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47197 * 299.99454 * 1 2 3 26 26 H 1.09007 * 109.46885 * 59.99795 * 1 2 3 27 27 H 1.09000 * 109.47403 * 300.68633 * 6 4 2 28 28 H 1.09004 * 109.47206 * 60.69443 * 6 4 2 29 29 H 1.09008 * 109.46806 * 180.68764 * 6 4 2 30 30 H 1.09003 * 109.58227 * 174.33855 * 9 7 4 31 31 H 1.09000 * 109.58052 * 294.74950 * 9 7 4 32 32 H 1.09004 * 109.47916 * 182.33252 * 10 9 7 33 33 H 1.08998 * 109.48250 * 62.32607 * 10 9 7 34 34 H 0.97004 * 120.00250 * 5.08747 * 14 12 11 35 35 H 1.08998 * 109.47389 * 300.00420 * 15 14 12 36 36 H 1.08999 * 109.47044 * 60.00804 * 15 14 12 37 37 H 0.97000 * 119.99844 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0408 -0.7224 -1.2512 5 1 3.1300 -0.6904 -1.2749 6 6 1.4803 -0.0411 -2.5013 7 16 1.4831 -2.4513 -1.1978 8 8 2.1244 -3.1878 -2.2302 9 6 2.1019 -3.0083 0.4177 10 6 1.5845 -2.0543 1.5002 11 7 2.0179 -0.6898 1.1954 12 6 2.8747 -0.0615 2.0245 13 8 3.3106 1.0350 1.7315 14 7 3.2485 -0.6488 3.1786 15 6 4.0905 0.0786 4.1315 16 6 4.3633 -0.7944 5.3293 17 1 3.9503 -1.7912 5.3761 18 6 5.1392 -0.3201 6.3656 19 7 5.3768 -1.0818 7.4111 20 14 5.8529 1.4042 6.2848 21 1 4.8961 2.3648 6.8909 22 1 7.1354 1.4448 7.0324 23 1 6.0943 1.7741 4.8671 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.3911 -0.0698 -2.4733 28 1 1.8159 0.9956 -2.5315 29 1 1.8349 -0.5638 -3.3897 30 1 1.7426 -4.0177 0.6183 31 1 3.1918 -3.0002 0.4140 32 1 1.9830 -2.3541 2.4695 33 1 0.4955 -2.0921 1.5277 34 1 2.9601 -1.5532 3.3783 35 1 5.0335 0.3445 3.6539 36 1 3.5771 0.9852 4.4517 37 1 5.9229 -0.7483 8.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = -56.103445 kcal Electronic energy + Delta-G solvation = -19938.570006 eV Core-core repulsion = 16843.159834 eV Total energy + Delta-G solvation = -3095.410172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15185 -37.11848 -35.78876 -34.71631 -33.92530 -32.27455 -30.57539 -29.33826 -27.61493 -25.33984 -23.43405 -22.32390 -20.92224 -19.45154 -18.57512 -17.25127 -16.59642 -16.32852 -15.77958 -15.39765 -15.18944 -14.79478 -14.62672 -14.08698 -13.62889 -13.59466 -13.21767 -12.86634 -12.65055 -12.40329 -12.37227 -12.29857 -12.04276 -12.03016 -11.55908 -11.40590 -11.09647 -11.00142 -10.78955 -9.99865 -9.96690 -9.57570 -9.49897 -8.83054 -8.72661 -8.39973 -8.08413 -6.23778 -4.26032 1.35198 2.33036 2.88678 3.25316 3.32589 3.41223 3.50774 3.68218 4.30101 4.33679 4.46895 4.68985 4.81215 4.88453 4.94653 5.05910 5.11943 5.18686 5.21684 5.42473 5.53085 5.61834 5.72164 5.72607 5.81291 5.92248 6.10123 6.56200 6.72381 7.06913 7.14641 7.29146 7.41879 8.20546 8.58032 8.74796 9.08024 9.36928 10.88148 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032194 B = 0.004602 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.510089 B = 6082.762884 C = 6500.092823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.182 3.818 3 H 0.111 0.889 4 C -0.416 4.416 5 H 0.095 0.905 6 C -0.126 4.126 7 S 1.237 4.763 8 O -0.856 6.856 9 C -0.461 4.461 10 C 0.132 3.868 11 N -0.641 5.641 12 C 0.698 3.302 13 O -0.596 6.596 14 N -0.721 5.721 15 C 0.236 3.764 16 C -0.543 4.543 17 H 0.079 0.921 18 C 0.079 3.921 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.261 1.261 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.392 0.608 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 -1.299 -15.621 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.129 0.871 4 C -0.535 4.535 5 H 0.113 0.887 6 C -0.184 4.184 7 S 1.436 4.564 8 O -0.852 6.852 9 C -0.599 4.599 10 C 0.007 3.993 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.475 6.475 14 N -0.376 5.376 15 C 0.114 3.886 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.125 4.125 19 N -0.529 5.529 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.936 -1.025 -16.280 22.117 hybrid contribution 2.804 0.384 0.460 2.867 sum -12.132 -0.641 -15.820 19.947 Atomic orbital electron populations 1.22323 0.94247 1.02795 1.03664 1.20474 0.93814 0.97856 0.80253 0.87114 1.27750 1.07924 1.16967 1.00898 0.88660 1.21485 1.01323 1.01296 0.94334 1.70372 1.17316 0.84989 0.83709 1.93093 1.78206 1.65417 1.48463 1.28038 1.09319 1.06930 1.15635 1.21116 1.00383 0.80266 0.97572 1.47363 1.49511 1.15111 1.25924 1.16068 0.79217 0.84165 0.80669 1.90858 1.59567 1.21171 1.75945 1.45644 1.54743 1.18764 1.18436 1.19392 0.89503 0.92605 0.87126 1.21065 1.33578 1.02177 1.01304 0.90349 1.24771 0.95251 0.97759 0.94745 1.69878 1.38293 1.36871 1.07905 0.86816 0.79024 0.84582 0.79274 1.19781 1.20908 1.18502 0.91667 0.91019 0.90347 0.90870 0.91111 0.92186 0.85724 0.88875 0.88795 0.89277 0.77106 0.95895 0.96280 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 8.36 37.16 0.31 -0.85 16 2 C 0.18 2.02 2.69 -67.87 -0.18 1.84 16 3 H 0.11 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.42 -4.44 3.06 -26.61 -0.08 -4.53 16 5 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 6 C -0.13 -1.04 8.82 37.16 0.33 -0.71 16 7 S 1.24 11.85 11.70 -107.50 -1.26 10.60 16 8 O -0.86 -13.67 18.14 -35.23 -0.64 -14.31 16 9 C -0.46 -4.57 6.65 37.30 0.25 -4.32 16 10 C 0.13 1.31 5.81 -3.96 -0.02 1.29 16 11 N -0.64 -8.68 2.57 -171.67 -0.44 -9.12 16 12 C 0.70 13.41 8.25 -86.92 -0.72 12.69 16 13 O -0.60 -13.76 15.67 5.29 0.08 -13.68 16 14 N -0.72 -14.64 5.45 -66.42 -0.36 -15.00 16 15 C 0.24 5.83 4.50 -5.19 -0.02 5.80 16 16 C -0.54 -14.80 9.83 -34.44 -0.34 -15.14 16 17 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 20 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 24 H 0.06 0.27 5.84 -51.93 -0.30 -0.04 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.37 6.38 -51.93 -0.33 0.04 16 27 H 0.07 0.38 6.36 -51.93 -0.33 0.05 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.01 5.41 -51.93 -0.28 0.73 16 33 H 0.09 0.54 6.92 -51.93 -0.36 0.18 16 34 H 0.39 6.96 5.67 -40.82 -0.23 6.73 16 35 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 36 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -37.90 302.42 -7.61 -45.51 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.08 Total: 2.07 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.58 Total: -1.82 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.03 Total: -49.68 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.56 Total: -27.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 11.85 SS G_CDS: -1.26 Total: 10.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -37.90 -7.61 -45.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.590 kcal (2) G-P(sol) polarization free energy of solvation -37.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds