Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46404 * 2 1 4 4 C 1.53239 * 109.46955 * 240.00127 * 2 1 3 5 5 H 1.08994 * 109.69473 * 177.79127 * 4 2 1 6 6 C 1.52997 * 109.58068 * 57.44439 * 4 2 1 7 7 S 1.81745 * 108.79569 * 297.65087 * 4 2 1 8 8 O 1.42106 * 109.46477 * 189.42141 * 7 4 2 9 9 C 1.81739 * 102.30875 * 305.46007 * 7 4 2 10 10 C 1.53278 * 108.79279 * 54.55194 * 9 7 4 11 11 N 1.46379 * 109.46405 * 302.32588 * 10 9 7 12 12 C 1.34773 * 119.64991 * 245.08847 * 11 10 9 13 13 O 1.21585 * 120.00298 * 174.94391 * 12 11 10 14 14 N 1.34779 * 119.99838 * 354.94305 * 12 11 10 15 15 C 1.46497 * 119.99981 * 185.07764 * 14 12 11 16 16 C 1.50706 * 109.47237 * 180.02562 * 15 14 12 17 17 H 1.07992 * 119.99525 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99792 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99535 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00307 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46926 * 90.00549 * 20 18 16 22 22 H 1.48502 * 109.47343 * 210.00259 * 20 18 16 23 23 H 1.48494 * 109.47391 * 330.00760 * 20 18 16 24 24 H 1.09005 * 109.47322 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47197 * 299.99454 * 1 2 3 26 26 H 1.09007 * 109.46885 * 59.99795 * 1 2 3 27 27 H 1.09000 * 109.47403 * 300.68633 * 6 4 2 28 28 H 1.09004 * 109.47206 * 60.69443 * 6 4 2 29 29 H 1.09008 * 109.46806 * 180.68764 * 6 4 2 30 30 H 1.09003 * 109.58227 * 174.33855 * 9 7 4 31 31 H 1.09000 * 109.58052 * 294.74950 * 9 7 4 32 32 H 1.09004 * 109.47916 * 182.33252 * 10 9 7 33 33 H 1.08998 * 109.48250 * 62.32607 * 10 9 7 34 34 H 0.97004 * 120.00250 * 5.08747 * 14 12 11 35 35 H 1.08998 * 109.47389 * 300.00420 * 15 14 12 36 36 H 1.08999 * 109.47044 * 60.00804 * 15 14 12 37 37 H 0.97000 * 119.99844 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0408 -0.7224 -1.2512 5 1 3.1300 -0.6904 -1.2749 6 6 1.4803 -0.0411 -2.5013 7 16 1.4831 -2.4513 -1.1978 8 8 2.1244 -3.1878 -2.2302 9 6 2.1019 -3.0083 0.4177 10 6 1.5845 -2.0543 1.5002 11 7 2.0179 -0.6898 1.1954 12 6 2.8747 -0.0615 2.0245 13 8 3.3106 1.0350 1.7315 14 7 3.2485 -0.6488 3.1786 15 6 4.0905 0.0786 4.1315 16 6 4.3633 -0.7944 5.3293 17 1 3.9503 -1.7912 5.3761 18 6 5.1392 -0.3201 6.3656 19 7 5.3768 -1.0818 7.4111 20 14 5.8529 1.4042 6.2848 21 1 4.8961 2.3648 6.8909 22 1 7.1354 1.4448 7.0324 23 1 6.0943 1.7741 4.8671 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.3911 -0.0698 -2.4733 28 1 1.8159 0.9956 -2.5315 29 1 1.8349 -0.5638 -3.3897 30 1 1.7426 -4.0177 0.6183 31 1 3.1918 -3.0002 0.4140 32 1 1.9830 -2.3541 2.4695 33 1 0.4955 -2.0921 1.5277 34 1 2.9601 -1.5532 3.3783 35 1 5.0335 0.3445 3.6539 36 1 3.5771 0.9852 4.4517 37 1 5.9229 -0.7483 8.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = -86.679625 kcal Electronic energy + Delta-G solvation = -19939.895888 eV Core-core repulsion = 16843.159834 eV Total energy + Delta-G solvation = -3096.736055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48466 -38.34920 -36.90305 -36.32732 -35.22873 -34.17668 -31.57729 -30.45353 -29.18414 -26.18223 -24.61702 -23.95673 -22.12901 -20.75539 -19.96397 -18.53631 -18.16469 -17.56838 -16.81364 -16.59746 -16.44010 -16.28620 -15.75566 -15.57773 -15.05366 -14.82897 -14.52147 -14.14264 -14.01614 -13.61843 -13.49627 -13.21627 -13.07182 -12.96179 -12.83470 -12.72175 -12.35590 -12.20919 -11.95953 -11.84404 -11.65289 -11.26483 -10.93304 -10.84152 -10.19341 -9.56982 -9.35084 -8.41639 -6.48384 0.51623 1.31207 1.33511 1.46536 1.47858 1.67446 2.08719 2.26867 2.68559 2.94035 3.02011 3.56234 3.80641 3.93260 4.02630 4.13879 4.29761 4.49154 4.50321 4.70598 4.73623 4.75974 4.92208 4.96039 5.01923 5.05715 5.12480 5.21281 5.23672 5.50107 5.54033 5.65477 5.83698 6.15902 6.52760 7.04160 7.17198 7.57576 8.72991 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032194 B = 0.004602 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.510089 B = 6082.762884 C = 6500.092823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.176 3.824 3 H 0.080 0.920 4 C -0.420 4.420 5 H 0.052 0.948 6 C -0.127 4.127 7 S 1.317 4.683 8 O -0.918 6.918 9 C -0.463 4.463 10 C 0.122 3.878 11 N -0.631 5.631 12 C 0.693 3.307 13 O -0.641 6.641 14 N -0.723 5.723 15 C 0.250 3.750 16 C -0.545 4.545 17 H 0.060 0.940 18 C 0.030 3.970 19 N -0.929 5.929 20 Si 0.936 3.064 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.266 1.266 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.158 0.842 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.404 0.596 35 H 0.003 0.997 36 H 0.013 0.987 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.481 -1.352 -16.440 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.072 3.928 3 H 0.098 0.902 4 C -0.539 4.539 5 H 0.071 0.929 6 C -0.186 4.186 7 S 1.516 4.484 8 O -0.913 6.913 9 C -0.602 4.602 10 C -0.001 4.001 11 N -0.368 5.368 12 C 0.394 3.606 13 O -0.524 6.524 14 N -0.379 5.379 15 C 0.126 3.874 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.171 4.171 19 N -0.568 5.568 20 Si 0.759 3.241 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.191 1.191 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.176 0.824 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.243 0.757 35 H 0.021 0.979 36 H 0.031 0.969 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.570 -1.124 -17.138 24.570 hybrid contribution 3.592 0.334 0.689 3.673 sum -13.978 -0.790 -16.449 21.600 Atomic orbital electron populations 1.22403 0.89797 1.05549 1.05020 1.20727 0.97042 0.95972 0.79067 0.90201 1.27829 1.05488 1.18390 1.02169 0.92864 1.21587 1.03920 1.00689 0.92382 1.69493 1.14910 0.82465 0.81515 1.92977 1.79469 1.67269 1.51627 1.28113 1.07300 1.08998 1.15782 1.21547 1.03656 0.77871 0.97057 1.47470 1.47600 1.16334 1.25369 1.16254 0.79633 0.83834 0.80832 1.90821 1.61301 1.23316 1.76929 1.45369 1.54714 1.19221 1.18561 1.18957 0.89320 0.92277 0.86895 1.21240 1.33129 1.01772 1.02160 0.92150 1.25535 0.95687 1.01393 0.94467 1.69971 1.39354 1.38714 1.08762 0.85887 0.78871 0.80343 0.78956 1.18474 1.19878 1.19066 0.88143 0.91292 0.87541 0.86644 0.91281 0.93118 0.82421 0.92208 0.89505 0.83626 0.75669 0.97917 0.96872 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 8.36 71.98 0.60 -0.97 16 2 C 0.18 3.66 2.69 45.09 0.12 3.78 16 3 H 0.08 2.20 6.91 -2.39 -0.02 2.18 16 4 C -0.42 -8.57 3.06 30.67 0.09 -8.48 16 5 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 6 C -0.13 -1.86 8.82 71.98 0.64 -1.23 16 7 S 1.32 22.11 11.70 -56.49 -0.66 21.45 16 8 O -0.92 -28.32 18.14 -148.98 -2.70 -31.03 16 9 C -0.46 -8.15 6.65 72.08 0.48 -7.67 16 10 C 0.12 2.08 5.81 86.50 0.50 2.59 16 11 N -0.63 -16.36 2.57 -815.32 -2.09 -18.45 16 12 C 0.69 26.87 8.25 179.06 1.48 28.35 16 13 O -0.64 -30.44 15.67 -3.98 -0.06 -30.50 16 14 N -0.72 -29.58 5.45 -482.30 -2.63 -32.21 16 15 C 0.25 12.50 4.50 85.64 0.39 12.89 16 16 C -0.55 -30.13 9.83 25.60 0.25 -29.88 16 17 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 18 C 0.03 1.68 5.47 84.65 0.46 2.15 16 19 N -0.93 -55.26 13.96 21.45 0.30 -54.96 16 20 Si 0.94 44.35 27.47 68.60 1.88 46.24 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.27 -12.77 6.54 99.48 0.65 -12.12 16 24 H 0.10 0.21 5.84 -2.38 -0.01 0.19 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 0.46 6.38 -2.38 -0.02 0.44 16 27 H 0.12 0.69 6.36 -2.39 -0.02 0.67 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.68 5.41 -2.38 -0.01 1.67 16 33 H 0.15 0.95 6.92 -2.39 -0.02 0.94 16 34 H 0.40 14.31 5.67 -92.71 -0.53 13.78 16 35 H 0.00 0.16 7.20 -2.39 -0.02 0.14 16 36 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -86.55 302.42 -0.45 -87.00 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.50 Total: 10.94 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.01 Total: 1.53 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.42 Total: -105.62 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -2.77 Total: -61.53 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.24 kcal Atomic # 16 Polarization: 22.11 SS G_CDS: -0.66 Total: 21.45 kcal Total: -86.55 -0.45 -87.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.323 kcal (2) G-P(sol) polarization free energy of solvation -86.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds