Wall clock time and date at job start Mon Mar 30 2020 01:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46904 * 116.95755 * 3 2 1 5 5 C 1.36948 * 120.00081 * 263.29955 * 4 3 2 6 6 H 1.08001 * 119.99872 * 202.33488 * 5 4 3 7 7 C 1.38984 * 119.99805 * 22.33914 * 5 4 3 8 8 N 1.31402 * 120.00137 * 13.03408 * 7 5 4 9 9 Si 1.86804 * 120.00003 * 193.03490 * 7 5 4 10 10 H 1.48505 * 109.46849 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99682 * 9 7 5 12 12 H 1.48495 * 109.47265 * 239.99773 * 9 7 5 13 13 C 1.34783 * 120.00068 * 83.30742 * 4 3 2 14 14 O 1.21642 * 119.99799 * 183.94639 * 13 4 3 15 15 C 1.47325 * 119.99630 * 3.94198 * 13 4 3 16 16 C 1.36187 * 126.45008 * 173.82363 * 15 13 4 17 17 O 1.34275 * 106.93082 * 180.28867 * 16 15 13 18 18 C 1.34052 * 108.23061 * 359.57523 * 17 16 15 19 19 C 1.50700 * 125.37002 * 180.17389 * 18 17 16 20 20 C 1.53781 * 113.61615 * 37.80317 * 19 18 17 21 21 C 1.53784 * 87.07952 * 220.02071 * 20 19 18 22 22 C 1.53777 * 87.08348 * 25.43253 * 21 20 19 23 23 N 1.29940 * 109.26445 * 0.43611 * 18 17 16 24 24 H 4.40636 * 5.51514 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47281 * 356.95541 * 3 2 1 26 26 H 1.09003 * 109.47002 * 236.95805 * 3 2 1 27 27 H 0.96996 * 119.99979 * 180.02562 * 8 7 5 28 28 H 1.08004 * 126.53695 * 0.02562 * 16 15 13 29 29 H 1.09002 * 112.84807 * 169.11303 * 19 18 17 30 30 H 1.09001 * 113.61213 * 334.57103 * 20 19 18 31 31 H 1.08994 * 113.61126 * 105.46946 * 20 19 18 32 32 H 1.09002 * 113.61055 * 270.87962 * 21 20 19 33 33 H 1.09002 * 113.68389 * 139.99425 * 21 20 19 34 34 H 1.08997 * 113.61337 * 220.02010 * 22 21 20 35 35 H 1.08999 * 113.61669 * 89.11156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6270 -1.2311 5 6 3.4930 -0.1510 -2.2994 6 1 4.1692 0.2369 -3.0469 7 6 2.9871 -1.4397 -2.4218 8 7 1.9798 -1.8241 -1.6706 9 14 3.7391 -2.6253 -3.6540 10 1 4.8519 -1.9532 -4.3719 11 1 4.2596 -3.8182 -2.9390 12 1 2.7033 -3.0467 -4.6311 13 6 3.2297 1.9690 -1.3123 14 8 3.5662 2.4925 -2.3575 15 6 2.9268 2.8016 -0.1353 16 6 3.0919 4.1496 -0.0336 17 8 2.7020 4.4991 1.2028 18 6 2.2974 3.3932 1.8433 19 6 1.7771 3.3448 3.2568 20 6 0.9002 4.5511 3.6322 21 6 1.5964 4.5307 5.0032 22 6 2.7848 3.8520 4.3019 23 7 2.4299 2.3686 1.0552 24 1 -1.0502 0.0001 0.0002 25 1 3.0098 -1.0254 0.0546 26 1 3.0091 0.5612 0.8615 27 1 1.6270 -2.7236 -1.7558 28 1 3.4691 4.8108 -0.7998 29 1 1.3312 2.3832 3.5110 30 1 1.1143 5.4454 3.0469 31 1 -0.1638 4.3195 3.6792 32 1 1.0999 3.8940 5.7355 33 1 1.8272 5.5226 5.3919 34 1 3.2422 3.0562 4.8897 35 1 3.5141 4.5552 3.8998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798805478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:09 Heat of formation + Delta-G solvation = 87.347540 kcal Electronic energy + Delta-G solvation = -20922.057039 eV Core-core repulsion = 17697.423417 eV Total energy + Delta-G solvation = -3224.633622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.92564 -38.76492 -38.31073 -35.11763 -34.29976 -31.91702 -31.06938 -30.15792 -26.39602 -26.03875 -25.81665 -25.07082 -22.77346 -21.36661 -20.17229 -18.76212 -17.73980 -17.23938 -16.46065 -16.34249 -16.00135 -15.51114 -15.19855 -14.63016 -14.09072 -13.87550 -13.18238 -12.90748 -12.68433 -12.61225 -12.53592 -12.26010 -12.21585 -11.52062 -11.09982 -11.04620 -10.90188 -10.64992 -10.60053 -10.43576 -10.32349 -9.90220 -9.26785 -9.16479 -8.72642 -8.47603 -8.43772 -7.79783 -6.33147 -3.91230 1.68023 2.61528 2.97923 3.17767 3.24219 3.30745 3.91256 4.13403 4.17955 4.32253 4.40137 4.42848 4.50421 4.70814 4.75831 5.01356 5.13673 5.39580 5.49649 5.56127 5.56912 5.71928 5.77717 5.78539 5.83146 5.90241 6.06373 6.16484 6.28174 6.44189 6.90071 7.04823 7.27971 7.50860 7.95453 8.11996 8.43384 9.08229 9.10612 9.31669 9.89326 10.64578 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.028990 B = 0.005172 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.633448 B = 5412.431821 C = 5968.189950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.074 4.074 3 C 0.223 3.777 4 N -0.412 5.412 5 C -0.310 4.310 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.855 5.855 9 Si 0.929 3.071 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.510 3.490 14 O -0.587 6.587 15 C -0.028 4.028 16 C -0.032 4.032 17 O -0.204 6.204 18 C 0.185 3.815 19 C -0.015 4.015 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.131 4.131 23 N -0.446 5.446 24 H 0.193 0.807 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.270 0.730 28 H 0.223 0.777 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 8.414 13.256 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.076 4.076 3 C 0.100 3.900 4 N -0.127 5.127 5 C -0.437 4.437 6 H 0.123 0.877 7 C -0.174 4.174 8 N -0.492 5.492 9 Si 0.756 3.244 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.299 3.701 14 O -0.473 6.473 15 C -0.149 4.149 16 C -0.105 4.105 17 O -0.091 6.091 18 C -0.023 4.023 19 C -0.034 4.034 20 C -0.171 4.171 21 C -0.177 4.177 22 C -0.169 4.169 23 N -0.177 5.177 24 H 0.210 0.790 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.239 0.761 29 H 0.148 0.852 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.967 7.836 12.919 15.140 hybrid contribution 0.002 -0.144 -0.999 1.009 sum -0.965 7.692 11.920 14.220 Atomic orbital electron populations 1.24063 0.95217 1.06802 1.04786 1.22883 0.93977 0.94784 0.95956 1.18681 0.84722 0.99707 0.86841 1.43562 1.52859 1.03416 1.12841 1.19807 1.25785 0.94616 1.03541 0.87712 1.25462 0.95021 0.98636 0.98255 1.70062 1.20938 1.19327 1.38892 0.85814 0.79117 0.79633 0.79869 1.19064 1.20486 1.20670 1.16629 0.86082 0.82103 0.85328 1.90633 1.54920 1.72304 1.29411 1.22329 1.04952 0.93220 0.94387 1.25044 1.03598 0.96816 0.85043 1.84226 1.62820 1.38073 1.23954 1.26079 1.00007 0.79053 0.97149 1.21162 0.97814 1.01517 0.82868 1.23002 0.99476 0.97659 0.96935 1.22814 0.97021 1.01382 0.96457 1.23010 0.96715 1.00631 0.96525 1.71131 1.16004 1.29011 1.01558 0.78970 0.88153 0.88715 0.91921 0.76053 0.85205 0.89354 0.90493 0.89642 0.90908 0.90382 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.68 19.25 29.55 0.57 -6.12 16 2 C -0.07 -1.84 10.43 -37.12 -0.39 -2.23 16 3 C 0.22 5.47 4.75 -6.83 -0.03 5.44 16 4 N -0.41 -11.15 2.60 -119.19 -0.31 -11.46 16 5 C -0.31 -8.74 9.26 -14.99 -0.14 -8.88 16 6 H 0.11 3.04 7.45 -52.49 -0.39 2.65 16 7 C 0.03 0.84 5.04 -17.46 -0.09 0.75 16 8 N -0.86 -23.02 9.21 55.50 0.51 -22.51 16 9 Si 0.93 20.64 29.57 -169.99 -5.03 15.61 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.51 13.48 7.54 -12.56 -0.09 13.39 16 14 O -0.59 -16.83 16.61 5.24 0.09 -16.75 16 15 C -0.03 -0.62 6.63 -83.03 -0.55 -1.17 16 16 C -0.03 -0.58 11.96 29.99 0.36 -0.22 16 17 O -0.20 -3.29 10.40 6.46 0.07 -3.23 16 18 C 0.19 3.01 7.33 -13.08 -0.10 2.91 16 19 C -0.01 -0.17 4.29 -90.96 -0.39 -0.56 16 20 C -0.13 -1.25 7.63 -25.92 -0.20 -1.45 16 21 C -0.14 -1.05 8.08 -25.92 -0.21 -1.26 16 22 C -0.13 -1.22 7.63 -25.92 -0.20 -1.41 16 23 N -0.45 -8.93 7.11 -7.66 -0.05 -8.98 16 24 H 0.19 3.70 7.80 -54.08 -0.42 3.28 16 25 H 0.10 2.54 6.48 -51.93 -0.34 2.21 16 26 H 0.10 2.15 5.32 -51.93 -0.28 1.87 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 28 H 0.22 3.37 8.06 -52.48 -0.42 2.94 16 29 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -32.85 306.67 -5.48 -38.33 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.92 Total: 5.17 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.46 Total: -0.81 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.15 Total: -42.95 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.15 Total: -19.97 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.85 -5.48 -38.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.680 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds