Wall clock time and date at job start Mon Mar 30 2020 01:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46904 * 116.95755 * 3 2 1 5 5 C 1.36948 * 120.00081 * 263.29955 * 4 3 2 6 6 H 1.08001 * 119.99872 * 202.33488 * 5 4 3 7 7 C 1.38984 * 119.99805 * 22.33914 * 5 4 3 8 8 N 1.31402 * 120.00137 * 13.03408 * 7 5 4 9 9 Si 1.86804 * 120.00003 * 193.03490 * 7 5 4 10 10 H 1.48505 * 109.46849 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99682 * 9 7 5 12 12 H 1.48495 * 109.47265 * 239.99773 * 9 7 5 13 13 C 1.34783 * 120.00068 * 83.30742 * 4 3 2 14 14 O 1.21642 * 119.99799 * 183.94639 * 13 4 3 15 15 C 1.47325 * 119.99630 * 3.94198 * 13 4 3 16 16 C 1.36187 * 126.45008 * 173.82363 * 15 13 4 17 17 O 1.34275 * 106.93082 * 180.28867 * 16 15 13 18 18 C 1.34052 * 108.23061 * 359.57523 * 17 16 15 19 19 C 1.50700 * 125.37002 * 180.17389 * 18 17 16 20 20 C 1.53781 * 113.61615 * 37.80317 * 19 18 17 21 21 C 1.53784 * 87.07952 * 220.02071 * 20 19 18 22 22 C 1.53777 * 87.08348 * 25.43253 * 21 20 19 23 23 N 1.29940 * 109.26445 * 0.43611 * 18 17 16 24 24 H 4.40636 * 5.51514 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47281 * 356.95541 * 3 2 1 26 26 H 1.09003 * 109.47002 * 236.95805 * 3 2 1 27 27 H 0.96996 * 119.99979 * 180.02562 * 8 7 5 28 28 H 1.08004 * 126.53695 * 0.02562 * 16 15 13 29 29 H 1.09002 * 112.84807 * 169.11303 * 19 18 17 30 30 H 1.09001 * 113.61213 * 334.57103 * 20 19 18 31 31 H 1.08994 * 113.61126 * 105.46946 * 20 19 18 32 32 H 1.09002 * 113.61055 * 270.87962 * 21 20 19 33 33 H 1.09002 * 113.68389 * 139.99425 * 21 20 19 34 34 H 1.08997 * 113.61337 * 220.02010 * 22 21 20 35 35 H 1.08999 * 113.61669 * 89.11156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6270 -1.2311 5 6 3.4930 -0.1510 -2.2994 6 1 4.1692 0.2369 -3.0469 7 6 2.9871 -1.4397 -2.4218 8 7 1.9798 -1.8241 -1.6706 9 14 3.7391 -2.6253 -3.6540 10 1 4.8519 -1.9532 -4.3719 11 1 4.2596 -3.8182 -2.9390 12 1 2.7033 -3.0467 -4.6311 13 6 3.2297 1.9690 -1.3123 14 8 3.5662 2.4925 -2.3575 15 6 2.9268 2.8016 -0.1353 16 6 3.0919 4.1496 -0.0336 17 8 2.7020 4.4991 1.2028 18 6 2.2974 3.3932 1.8433 19 6 1.7771 3.3448 3.2568 20 6 0.9002 4.5511 3.6322 21 6 1.5964 4.5307 5.0032 22 6 2.7848 3.8520 4.3019 23 7 2.4299 2.3686 1.0552 24 1 -1.0502 0.0001 0.0002 25 1 3.0098 -1.0254 0.0546 26 1 3.0091 0.5612 0.8615 27 1 1.6270 -2.7236 -1.7558 28 1 3.4691 4.8108 -0.7998 29 1 1.3312 2.3832 3.5110 30 1 1.1143 5.4454 3.0469 31 1 -0.1638 4.3195 3.6792 32 1 1.0999 3.8940 5.7355 33 1 1.8272 5.5226 5.3919 34 1 3.2422 3.0562 4.8897 35 1 3.5141 4.5552 3.8998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:08 Heat of formation + Delta-G solvation = 66.318847 kcal Electronic energy + Delta-G solvation = -20922.968912 eV Core-core repulsion = 17697.423417 eV Total energy + Delta-G solvation = -3225.545495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.35586 -40.39547 -39.45186 -37.15473 -35.81510 -33.89234 -33.01852 -31.55679 -28.35576 -27.31089 -26.75867 -26.53825 -24.50146 -22.64780 -21.48938 -19.99823 -19.65978 -18.88066 -18.19238 -17.83090 -17.60088 -16.70099 -16.55680 -16.06774 -15.92454 -15.76997 -14.76138 -14.50439 -14.20633 -14.11731 -13.70083 -13.48665 -13.42774 -13.28158 -12.83008 -12.66249 -12.21893 -12.12509 -11.87118 -11.50542 -11.37568 -11.34163 -11.24991 -11.07168 -10.72831 -10.39390 -9.97661 -9.76226 -8.35200 -6.04626 0.20034 1.08521 1.40452 1.43169 1.55250 1.64800 2.05566 2.29285 2.40509 2.56288 2.81221 3.08694 3.22506 3.60665 3.70685 3.92300 3.95908 4.01002 4.03029 4.14558 4.57324 4.69136 4.77184 4.78580 4.83698 4.94106 4.96538 5.08627 5.15685 5.17203 5.32580 5.38411 5.47555 5.55260 5.98264 6.33188 6.64929 7.02346 7.22931 7.30063 7.86010 8.61304 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.028990 B = 0.005172 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.633448 B = 5412.431821 C = 5968.189950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.112 4.112 3 C 0.233 3.767 4 N -0.426 5.426 5 C -0.352 4.352 6 H 0.082 0.918 7 C 0.000 4.000 8 N -0.871 5.871 9 Si 0.998 3.002 10 H -0.270 1.270 11 H -0.262 1.262 12 H -0.277 1.277 13 C 0.501 3.499 14 O -0.625 6.625 15 C -0.073 4.073 16 C -0.001 4.001 17 O -0.191 6.191 18 C 0.204 3.796 19 C -0.029 4.029 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.127 4.127 23 N -0.477 5.477 24 H 0.228 0.772 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.275 0.725 28 H 0.249 0.751 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 9.000 15.095 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.113 4.113 3 C 0.111 3.889 4 N -0.141 5.141 5 C -0.480 4.480 6 H 0.100 0.900 7 C -0.204 4.204 8 N -0.507 5.507 9 Si 0.821 3.179 10 H -0.194 1.194 11 H -0.187 1.187 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.514 6.514 15 C -0.192 4.192 16 C -0.075 4.075 17 O -0.077 6.077 18 C -0.005 4.005 19 C -0.048 4.048 20 C -0.168 4.168 21 C -0.160 4.160 22 C -0.166 4.166 23 N -0.207 5.207 24 H 0.244 0.756 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.265 0.735 29 H 0.151 0.849 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.846 8.404 14.793 17.113 hybrid contribution 0.207 -0.224 -1.476 1.507 sum -1.638 8.180 13.317 15.715 Atomic orbital electron populations 1.24918 0.96193 1.05255 1.03217 1.23130 0.94549 0.96216 0.97412 1.18586 0.85151 0.98671 0.86447 1.43754 1.53186 1.03881 1.13282 1.19810 1.27427 0.96152 1.04574 0.89972 1.26264 0.94970 0.99282 0.99869 1.70160 1.21210 1.19777 1.39548 0.84814 0.78116 0.77478 0.77500 1.19399 1.18710 1.20217 1.17229 0.84960 0.82331 0.86369 1.90570 1.56439 1.73056 1.31289 1.21850 1.08778 0.94176 0.94392 1.25442 1.00755 0.95649 0.85654 1.84292 1.62429 1.37833 1.23142 1.27050 0.97464 0.78025 0.97978 1.21662 0.99725 1.02979 0.80470 1.23031 0.99759 0.96025 0.97973 1.22780 0.95264 1.02313 0.95594 1.23036 0.96901 1.00895 0.95729 1.70989 1.17625 1.30665 1.01445 0.75554 0.89835 0.87359 0.91473 0.73529 0.84863 0.89801 0.89607 0.88016 0.89413 0.89457 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.56 19.25 74.32 1.43 -11.13 16 2 C -0.11 -5.57 10.43 31.13 0.32 -5.25 16 3 C 0.23 11.84 4.75 84.58 0.40 12.24 16 4 N -0.43 -24.09 2.60 -649.25 -1.69 -25.77 16 5 C -0.35 -20.78 9.26 84.07 0.78 -20.00 16 6 H 0.08 5.07 7.45 -2.91 -0.02 5.05 16 7 C 0.00 0.01 5.04 84.94 0.43 0.44 16 8 N -0.87 -47.41 9.21 21.67 0.20 -47.21 16 9 Si 1.00 42.91 29.57 68.60 2.03 44.93 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.50 27.58 7.54 86.63 0.65 28.23 16 14 O -0.62 -37.46 16.61 -4.16 -0.07 -37.53 16 15 C -0.07 -3.25 6.63 40.40 0.27 -2.99 16 16 C 0.00 -0.04 11.96 67.34 0.81 0.76 16 17 O -0.19 -5.81 10.40 0.19 0.00 -5.81 16 18 C 0.20 6.35 7.33 88.39 0.65 7.00 16 19 C -0.03 -0.62 4.29 -11.01 -0.05 -0.67 16 20 C -0.13 -2.06 7.63 31.12 0.24 -1.82 16 21 C -0.12 -1.39 8.08 31.12 0.25 -1.13 16 22 C -0.13 -2.01 7.63 31.12 0.24 -1.77 16 23 N -0.48 -19.08 7.11 -293.04 -2.08 -21.16 16 24 H 0.23 8.19 7.80 -4.41 -0.03 8.16 16 25 H 0.08 4.41 6.48 -2.39 -0.02 4.40 16 26 H 0.11 5.09 5.32 -2.39 -0.01 5.08 16 27 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.25 7.18 8.06 -2.91 -0.02 7.16 16 29 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.08 1.43 7.82 -2.39 -0.02 1.41 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 Total: -1.00 -73.60 306.67 5.92 -67.69 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.11 Total: 20.96 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.42 Total: 3.91 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -3.57 Total: -94.15 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.07 Total: -43.34 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -73.60 5.92 -67.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.008 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds