Wall clock time and date at job start Mon Mar 30 2020 01:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47281 * 72.99782 * 3 2 1 5 5 C 1.37100 * 119.99428 * 264.96059 * 4 3 2 6 6 H 1.08001 * 119.99820 * 192.13912 * 5 4 3 7 7 C 1.38946 * 120.00573 * 12.14351 * 5 4 3 8 8 N 1.31419 * 119.99868 * 16.48854 * 7 5 4 9 9 Si 1.86798 * 120.00593 * 196.48242 * 7 5 4 10 10 H 1.48504 * 109.46657 * 84.98390 * 9 7 5 11 11 H 1.48493 * 109.47501 * 204.98539 * 9 7 5 12 12 H 1.48496 * 109.47164 * 324.99062 * 9 7 5 13 13 C 1.34775 * 120.00033 * 84.96321 * 4 3 2 14 14 O 1.21284 * 120.00349 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99622 * 179.97438 * 13 4 3 16 16 O 1.42894 * 109.47084 * 179.97438 * 15 13 4 17 17 C 1.42904 * 114.00204 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47110 * 180.02562 * 17 16 15 19 19 C 1.38223 * 119.62010 * 0.02562 * 18 17 16 20 20 C 1.38628 * 119.16183 * 179.97438 * 19 18 17 21 21 C 1.38665 * 118.42343 * 359.97438 * 20 19 18 22 22 C 1.38192 * 119.16015 * 0.02562 * 21 20 19 23 23 N 1.31854 * 119.61594 * 179.97438 * 18 17 16 24 24 H 4.40641 * 5.51355 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47119 * 312.99282 * 3 2 1 26 26 H 1.09000 * 109.46700 * 192.99608 * 3 2 1 27 27 H 0.96993 * 120.00517 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.47161 * 59.99834 * 15 13 4 29 29 H 1.09000 * 109.47388 * 300.00279 * 15 13 4 30 30 H 1.08994 * 109.47288 * 60.00077 * 17 16 15 31 31 H 1.09008 * 109.46914 * 299.99623 * 17 16 15 32 32 H 1.08001 * 120.42160 * 359.95666 * 19 18 17 33 33 H 1.08004 * 120.78700 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.42336 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.61124 * 180.27635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4030 -1.3208 5 6 3.4620 -1.7127 -1.5597 6 1 4.0017 -1.9796 -2.4563 7 6 3.0994 -2.6969 -0.6483 8 7 2.1828 -2.4462 0.2595 9 14 3.9147 -4.3763 -0.7134 10 1 5.1879 -4.3383 0.0499 11 1 3.0090 -5.3898 -0.1152 12 1 4.1953 -4.7359 -2.1266 13 6 3.2622 0.5131 -2.3010 14 8 2.9722 1.6717 -2.0899 15 6 3.7653 0.0979 -3.6595 16 8 3.8115 1.2383 -4.5194 17 6 4.2770 0.9522 -5.8398 18 6 4.2854 2.2196 -6.6551 19 6 3.8768 3.4067 -6.0767 20 6 3.8887 4.5669 -6.8353 21 6 4.3137 4.4897 -8.1529 22 6 4.7078 3.2672 -8.6628 23 7 4.6833 2.1835 -7.9116 24 1 -1.0499 0.0001 -0.0002 25 1 3.0097 -0.6999 0.7517 26 1 3.0089 1.0022 0.2311 27 1 1.9299 -3.1331 0.8960 28 1 3.0938 -0.6491 -4.0830 29 1 4.7651 -0.3255 -3.5630 30 1 3.6161 0.2229 -6.3081 31 1 5.2876 0.5468 -5.7889 32 1 3.5520 3.4299 -5.0470 33 1 3.5753 5.5089 -6.4097 34 1 4.3356 5.3735 -8.7732 35 1 5.0443 3.1995 -9.6868 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807630529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:18 Heat of formation + Delta-G solvation = 32.022746 kcal Electronic energy + Delta-G solvation = -20006.491250 eV Core-core repulsion = 16779.458565 eV Total energy + Delta-G solvation = -3227.032685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16929 -38.82351 -37.12081 -35.04352 -32.61725 -32.01553 -31.79007 -31.40354 -28.28463 -26.62480 -25.56952 -24.17960 -23.35320 -21.92709 -19.40229 -17.98327 -17.23700 -16.74914 -16.36385 -16.10272 -15.85978 -15.27804 -15.04219 -14.47515 -14.30927 -14.19555 -13.75155 -13.59458 -13.10894 -12.61679 -12.60250 -12.02350 -11.74127 -11.53413 -11.48770 -11.28338 -11.10105 -10.63328 -10.50544 -9.88938 -9.49667 -9.45256 -9.44123 -9.35382 -8.84717 -8.73565 -8.42869 -8.00632 -6.44326 -4.03609 1.10248 1.29624 3.04507 3.14292 3.16724 3.37214 3.71879 3.78430 3.94620 4.08416 4.25659 4.57839 4.80036 4.85288 4.93193 5.06005 5.13471 5.37124 5.42237 5.54011 5.66940 5.67831 5.79431 5.88629 5.97508 6.11272 6.13936 6.27617 6.66279 6.72028 6.99398 7.17545 7.22419 7.45185 7.56820 7.95362 8.23848 8.92841 8.96265 9.35052 9.75719 10.53231 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.004069 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.393778 B = 6880.078494 C = 7792.777795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.098 4.098 3 C 0.237 3.763 4 N -0.438 5.438 5 C -0.345 4.345 6 H 0.102 0.898 7 C 0.037 3.963 8 N -0.857 5.857 9 Si 0.925 3.075 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.461 3.539 14 O -0.586 6.586 15 C 0.066 3.934 16 O -0.365 6.365 17 C 0.111 3.889 18 C 0.130 3.870 19 C -0.142 4.142 20 C -0.079 4.079 21 C -0.181 4.181 22 C 0.095 3.905 23 N -0.486 5.486 24 H 0.198 0.802 25 H 0.124 0.876 26 H 0.064 0.936 27 H 0.272 0.728 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 5.938 -10.390 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.099 4.099 3 C 0.115 3.885 4 N -0.158 5.158 5 C -0.472 4.472 6 H 0.119 0.881 7 C -0.169 4.169 8 N -0.494 5.494 9 Si 0.751 3.249 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.249 3.751 14 O -0.470 6.470 15 C -0.013 4.013 16 O -0.283 6.283 17 C 0.033 3.967 18 C -0.007 4.007 19 C -0.161 4.161 20 C -0.105 4.105 21 C -0.201 4.201 22 C -0.062 4.062 23 N -0.196 5.196 24 H 0.215 0.785 25 H 0.141 0.859 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.017 5.770 -10.390 12.545 hybrid contribution -0.193 -0.559 0.203 0.625 sum 3.824 5.211 -10.187 12.064 Atomic orbital electron populations 1.24235 0.95382 1.07310 1.02795 1.23280 0.94444 0.94472 0.97749 1.18357 0.84034 0.99152 0.86962 1.43654 1.55974 1.07669 1.08473 1.19676 1.36236 0.81913 1.09368 0.88059 1.25277 0.95220 0.99940 0.96444 1.70088 1.25931 1.34867 1.18520 0.85982 0.79021 0.81086 0.78822 1.20064 1.20877 1.19476 1.19667 0.83955 0.86177 0.85295 1.90562 1.55449 1.18952 1.82044 1.22111 1.01228 0.87664 0.90290 1.87877 1.87045 1.33045 1.20356 1.20890 0.99828 0.92711 0.83258 1.20892 0.94610 0.94889 0.90357 1.22168 0.98838 0.92408 1.02700 1.21667 0.96070 0.98913 0.93830 1.22115 1.01892 0.99446 0.96630 1.22614 0.96441 0.87874 0.99308 1.67216 1.14715 1.32118 1.05565 0.78480 0.85862 0.91822 0.91756 0.90825 0.91115 0.91041 0.91056 0.82909 0.84799 0.85028 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.37 19.25 29.55 0.57 -5.80 16 2 C -0.10 -2.44 11.87 -37.12 -0.44 -2.88 16 3 C 0.24 5.79 5.08 -6.83 -0.03 5.75 16 4 N -0.44 -10.86 2.60 -117.94 -0.31 -11.17 16 5 C -0.34 -8.32 9.27 -14.93 -0.14 -8.46 16 6 H 0.10 2.24 6.45 -52.49 -0.34 1.91 16 7 C 0.04 0.88 5.07 -17.47 -0.09 0.79 16 8 N -0.86 -21.49 9.04 55.50 0.50 -20.99 16 9 Si 0.92 18.55 29.58 -169.99 -5.03 13.52 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 13 C 0.46 11.22 7.66 -10.99 -0.08 11.13 16 14 O -0.59 -15.81 16.16 -14.36 -0.23 -16.04 16 15 C 0.07 1.30 4.82 36.01 0.17 1.48 16 16 O -0.37 -6.95 8.33 -55.14 -0.46 -7.41 16 17 C 0.11 1.70 6.48 36.01 0.23 1.93 16 18 C 0.13 1.98 6.78 -82.59 -0.56 1.42 16 19 C -0.14 -2.09 9.41 -39.44 -0.37 -2.46 16 20 C -0.08 -0.93 10.18 -39.28 -0.40 -1.33 16 21 C -0.18 -1.86 10.11 -39.44 -0.40 -2.26 16 22 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 23 N -0.49 -6.96 10.27 -9.47 -0.10 -7.06 16 24 H 0.20 3.67 7.80 -54.10 -0.42 3.25 16 25 H 0.12 3.03 5.91 -51.93 -0.31 2.72 16 26 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 29 H 0.07 1.25 7.74 -51.93 -0.40 0.85 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.15 2.52 7.00 -52.49 -0.37 2.15 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -30.62 313.77 -6.53 -37.15 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.90 Total: 7.07 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.74 Total: 0.19 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.10 Total: -39.21 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.69 Total: -23.45 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.62 -6.53 -37.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807630529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.173 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds