Wall clock time and date at job start Mon Mar 30 2020 01:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47281 * 72.99782 * 3 2 1 5 5 C 1.37100 * 119.99428 * 264.96059 * 4 3 2 6 6 H 1.08001 * 119.99820 * 192.13912 * 5 4 3 7 7 C 1.38946 * 120.00573 * 12.14351 * 5 4 3 8 8 N 1.31419 * 119.99868 * 16.48854 * 7 5 4 9 9 Si 1.86798 * 120.00593 * 196.48242 * 7 5 4 10 10 H 1.48504 * 109.46657 * 84.98390 * 9 7 5 11 11 H 1.48493 * 109.47501 * 204.98539 * 9 7 5 12 12 H 1.48496 * 109.47164 * 324.99062 * 9 7 5 13 13 C 1.34775 * 120.00033 * 84.96321 * 4 3 2 14 14 O 1.21284 * 120.00349 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99622 * 179.97438 * 13 4 3 16 16 O 1.42894 * 109.47084 * 179.97438 * 15 13 4 17 17 C 1.42904 * 114.00204 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47110 * 180.02562 * 17 16 15 19 19 C 1.38223 * 119.62010 * 0.02562 * 18 17 16 20 20 C 1.38628 * 119.16183 * 179.97438 * 19 18 17 21 21 C 1.38665 * 118.42343 * 359.97438 * 20 19 18 22 22 C 1.38192 * 119.16015 * 0.02562 * 21 20 19 23 23 N 1.31854 * 119.61594 * 179.97438 * 18 17 16 24 24 H 4.40641 * 5.51355 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47119 * 312.99282 * 3 2 1 26 26 H 1.09000 * 109.46700 * 192.99608 * 3 2 1 27 27 H 0.96993 * 120.00517 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.47161 * 59.99834 * 15 13 4 29 29 H 1.09000 * 109.47388 * 300.00279 * 15 13 4 30 30 H 1.08994 * 109.47288 * 60.00077 * 17 16 15 31 31 H 1.09008 * 109.46914 * 299.99623 * 17 16 15 32 32 H 1.08001 * 120.42160 * 359.95666 * 19 18 17 33 33 H 1.08004 * 120.78700 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.42336 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.61124 * 180.27635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4030 -1.3208 5 6 3.4620 -1.7127 -1.5597 6 1 4.0017 -1.9796 -2.4563 7 6 3.0994 -2.6969 -0.6483 8 7 2.1828 -2.4462 0.2595 9 14 3.9147 -4.3763 -0.7134 10 1 5.1879 -4.3383 0.0499 11 1 3.0090 -5.3898 -0.1152 12 1 4.1953 -4.7359 -2.1266 13 6 3.2622 0.5131 -2.3010 14 8 2.9722 1.6717 -2.0899 15 6 3.7653 0.0979 -3.6595 16 8 3.8115 1.2383 -4.5194 17 6 4.2770 0.9522 -5.8398 18 6 4.2854 2.2196 -6.6551 19 6 3.8768 3.4067 -6.0767 20 6 3.8887 4.5669 -6.8353 21 6 4.3137 4.4897 -8.1529 22 6 4.7078 3.2672 -8.6628 23 7 4.6833 2.1835 -7.9116 24 1 -1.0499 0.0001 -0.0002 25 1 3.0097 -0.6999 0.7517 26 1 3.0089 1.0022 0.2311 27 1 1.9299 -3.1331 0.8960 28 1 3.0938 -0.6491 -4.0830 29 1 4.7651 -0.3255 -3.5630 30 1 3.6161 0.2229 -6.3081 31 1 5.2876 0.5468 -5.7889 32 1 3.5520 3.4299 -5.0470 33 1 3.5753 5.5089 -6.4097 34 1 4.3356 5.3735 -8.7732 35 1 5.0443 3.1995 -9.6868 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807630529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:18 Heat of formation + Delta-G solvation = 14.307376 kcal Electronic energy + Delta-G solvation = -20007.259446 eV Core-core repulsion = 16779.458565 eV Total energy + Delta-G solvation = -3227.800881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17885 -40.60717 -38.58856 -36.93860 -33.84445 -33.58277 -33.35243 -32.81230 -29.88010 -28.09907 -27.15290 -25.91814 -24.34065 -22.95035 -21.23951 -19.76104 -18.68899 -18.32702 -17.62312 -17.50887 -17.26813 -16.50464 -16.34802 -16.03821 -15.89988 -15.84444 -15.11121 -14.96321 -14.25274 -14.16424 -13.98788 -13.84410 -13.34672 -13.05108 -12.82315 -12.75388 -12.53171 -12.38857 -12.08224 -11.31131 -11.24736 -10.94287 -10.73925 -10.63002 -10.44122 -10.32375 -9.90596 -9.85415 -8.27042 -5.93331 0.14418 0.34372 1.43369 1.51782 1.61666 1.76734 1.97799 2.32967 2.33833 2.40146 2.82150 3.09801 3.22153 3.70756 3.87193 3.90750 4.03093 4.13247 4.21335 4.32563 4.35632 4.38723 4.42826 4.51120 4.69493 4.77175 4.92359 5.06738 5.18424 5.31802 5.38198 5.40595 5.70586 5.77645 6.06758 6.38722 6.97454 7.06437 7.09535 7.48441 7.88922 8.70695 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.004069 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.393778 B = 6880.078494 C = 7792.777795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.148 4.148 3 C 0.237 3.763 4 N -0.444 5.444 5 C -0.365 4.365 6 H 0.120 0.880 7 C -0.003 4.003 8 N -0.882 5.882 9 Si 0.995 3.005 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.258 1.258 13 C 0.444 3.556 14 O -0.624 6.624 15 C 0.078 3.922 16 O -0.386 6.386 17 C 0.110 3.890 18 C 0.107 3.893 19 C -0.169 4.169 20 C -0.080 4.080 21 C -0.167 4.167 22 C 0.091 3.909 23 N -0.505 5.505 24 H 0.237 0.763 25 H 0.117 0.883 26 H 0.058 0.942 27 H 0.271 0.729 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 5.631 -12.556 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.149 4.149 3 C 0.115 3.885 4 N -0.163 5.163 5 C -0.491 4.491 6 H 0.137 0.863 7 C -0.206 4.206 8 N -0.520 5.520 9 Si 0.819 3.181 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.181 1.181 13 C 0.233 3.767 14 O -0.512 6.512 15 C -0.001 4.001 16 O -0.304 6.304 17 C 0.033 3.967 18 C -0.029 4.029 19 C -0.189 4.189 20 C -0.106 4.106 21 C -0.186 4.186 22 C -0.066 4.066 23 N -0.216 5.216 24 H 0.253 0.747 25 H 0.134 0.866 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.174 0.826 34 H 0.191 0.809 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.523 5.455 -12.561 14.421 hybrid contribution -0.400 -0.367 0.829 0.991 sum 4.123 5.088 -11.731 13.436 Atomic orbital electron populations 1.25190 0.96431 1.05351 1.00879 1.23661 0.95300 0.96320 0.99618 1.18262 0.84497 0.98569 0.87172 1.43899 1.55544 1.08259 1.08605 1.20164 1.36787 0.81712 1.10438 0.86258 1.26158 0.95284 1.03373 0.95815 1.70217 1.26846 1.35906 1.19010 0.84905 0.77694 0.76262 0.79282 1.19674 1.21449 1.18150 1.20481 0.83725 0.85669 0.86797 1.90519 1.57209 1.20465 1.82992 1.21938 1.02268 0.87859 0.88063 1.87864 1.87538 1.33058 1.21963 1.21031 1.00549 0.93571 0.81586 1.20851 0.96175 0.94777 0.91114 1.22053 1.00856 0.93965 1.01979 1.21990 0.95396 0.98690 0.94515 1.22547 0.99523 1.00556 0.96008 1.23333 0.95252 0.87559 1.00462 1.67234 1.15460 1.33744 1.05164 0.74653 0.86554 0.92376 0.91845 0.89851 0.88930 0.90200 0.89769 0.85785 0.82564 0.80914 0.79271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.79 19.25 74.32 1.43 -10.36 16 2 C -0.15 -7.50 11.87 31.12 0.37 -7.13 16 3 C 0.24 12.02 5.08 84.57 0.43 12.45 16 4 N -0.44 -22.51 2.60 -645.43 -1.68 -24.19 16 5 C -0.36 -17.53 9.27 84.04 0.78 -16.76 16 6 H 0.12 5.15 6.45 -2.91 -0.02 5.13 16 7 C 0.00 -0.16 5.07 84.92 0.43 0.27 16 8 N -0.88 -44.50 9.04 21.66 0.20 -44.30 16 9 Si 1.00 37.29 29.58 68.60 2.03 39.32 16 10 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.29 -11.00 7.11 99.48 0.71 -10.30 16 12 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 13 C 0.44 22.18 7.66 87.66 0.67 22.85 16 14 O -0.62 -35.18 16.16 15.99 0.26 -34.92 16 15 C 0.08 3.08 4.82 71.24 0.34 3.42 16 16 O -0.39 -15.04 8.33 -129.94 -1.08 -16.12 16 17 C 0.11 3.37 6.48 71.24 0.46 3.83 16 18 C 0.11 3.27 6.78 42.55 0.29 3.56 16 19 C -0.17 -5.09 9.41 22.36 0.21 -4.88 16 20 C -0.08 -1.77 10.18 22.47 0.23 -1.54 16 21 C -0.17 -2.88 10.11 22.36 0.23 -2.65 16 22 C 0.09 1.81 11.18 84.67 0.95 2.76 16 23 N -0.50 -13.79 10.27 -183.88 -1.89 -15.68 16 24 H 0.24 8.27 7.80 -4.42 -0.03 8.24 16 25 H 0.12 5.95 5.91 -2.39 -0.01 5.94 16 26 H 0.06 2.91 7.58 -2.39 -0.02 2.89 16 27 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 28 H 0.08 3.10 8.06 -2.38 -0.02 3.08 16 29 H 0.09 3.21 7.74 -2.39 -0.02 3.19 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.12 4.40 7.00 -2.91 -0.02 4.38 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -67.75 313.77 5.75 -62.00 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 1.10 Total: 28.09 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 6.82 Total: 5.82 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.37 Total: -84.18 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.82 Total: -51.05 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -67.75 5.75 -62.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807630529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.308 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds