Wall clock time and date at job start Mon Mar 30 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00038 * 2 1 4 4 N 1.46503 * 109.47254 * 125.00221 * 3 2 1 5 5 C 1.46499 * 119.99805 * 262.09603 * 4 3 2 6 6 C 1.50701 * 109.47073 * 269.99499 * 5 4 3 7 7 H 1.08004 * 119.99743 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99976 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99901 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47163 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47090 * 120.00191 * 10 8 6 13 13 H 1.48505 * 109.46780 * 240.00225 * 10 8 6 14 14 C 1.34778 * 120.00003 * 82.08913 * 4 3 2 15 15 O 1.21724 * 119.99719 * 181.39277 * 14 4 3 16 16 C 1.46504 * 119.99827 * 1.39550 * 14 4 3 17 17 C 1.37778 * 125.85561 * 170.18647 * 16 14 4 18 18 C 1.39927 * 107.68431 * 180.02562 * 17 16 14 19 19 O 1.35124 * 145.13646 * 180.02562 * 18 17 16 20 20 C 1.34379 * 109.62180 * 179.97438 * 19 18 17 21 21 C 1.34464 * 109.44926 * 0.24374 * 20 19 18 22 22 C 1.39127 * 107.40833 * 359.97438 * 18 17 16 23 23 N 1.37114 * 108.10769 * 0.02562 * 22 18 17 24 24 H 0.96997 * 125.74239 * 180.02562 * 23 22 18 25 25 H 1.08000 * 119.99937 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99751 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99847 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47242 * 5.00035 * 3 2 1 29 29 H 1.09000 * 109.47328 * 244.99867 * 3 2 1 30 30 H 1.08993 * 109.47406 * 29.99367 * 5 4 3 31 31 H 1.08999 * 109.47271 * 149.99934 * 5 4 3 32 32 H 0.97002 * 119.99623 * 179.97438 * 9 8 6 33 33 H 1.08003 * 126.15205 * 359.97438 * 17 16 14 34 34 H 1.08003 * 125.27673 * 179.97438 * 20 19 18 35 35 H 1.08000 * 126.41303 * 179.75610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6208 2.0191 2.3703 6 6 3.0620 3.4583 2.2988 7 1 3.5692 3.8245 1.4183 8 6 2.8183 4.3075 3.3572 9 7 2.2012 3.8614 4.4295 10 14 3.3646 6.0916 3.2682 11 1 4.0320 6.3405 1.9653 12 1 2.1805 6.9788 3.3959 13 1 4.3160 6.3736 4.3730 14 6 4.1928 0.7242 1.0326 15 8 4.9554 0.7247 1.9813 16 6 4.5781 0.0631 -0.2168 17 6 5.8307 -0.4248 -0.5186 18 6 5.7740 -0.9759 -1.8036 19 8 6.4760 -1.6029 -2.7730 20 6 5.6766 -1.8417 -3.8264 21 6 4.4434 -1.3721 -3.5681 22 6 4.4730 -0.8135 -2.2690 23 7 3.7479 -0.1778 -1.2943 24 1 2.8097 0.0619 -1.3515 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.5392 1.9766 2.4979 31 1 3.1059 1.5321 3.2162 32 1 2.0301 4.4588 5.1743 33 1 6.7001 -0.3878 0.1211 34 1 5.9790 -2.3307 -4.7407 35 1 3.5895 -1.4160 -4.2280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:45 Heat of formation + Delta-G solvation = 57.128230 kcal Electronic energy + Delta-G solvation = -20746.924942 eV Core-core repulsion = 17520.980912 eV Total energy + Delta-G solvation = -3225.944030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.93948 -41.52223 -39.49802 -37.63806 -35.25393 -33.88592 -33.28149 -31.77712 -30.28320 -28.81451 -27.25452 -25.64770 -23.46236 -22.54736 -21.68940 -21.47506 -20.26629 -18.86713 -18.69803 -18.16843 -17.42478 -17.23233 -16.53489 -16.37431 -16.17462 -15.63515 -15.32141 -14.77955 -14.55219 -14.45046 -14.14317 -13.98144 -13.62637 -13.39851 -13.20559 -12.94482 -12.67596 -12.60652 -12.38592 -12.26627 -11.71837 -11.11070 -11.04372 -10.68163 -10.58171 -9.71067 -9.60684 -8.85456 -8.25107 -6.40079 -0.00409 1.04357 1.24935 1.36328 1.39447 1.50835 1.56054 1.72399 1.88983 2.21343 2.37349 2.45254 3.05156 3.44641 3.68504 3.77426 3.97380 3.98704 4.08084 4.32968 4.49240 4.61160 4.72131 4.78563 4.88618 4.94696 5.03341 5.16513 5.37382 5.48474 5.52121 5.60228 5.64618 5.76602 6.00275 6.15355 6.35041 6.49559 6.67709 7.10772 7.32073 8.82388 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.004955 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.545196 B = 5649.063880 C = 6269.291542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.228 4.228 3 C 0.116 3.884 4 N -0.590 5.590 5 C 0.264 3.736 6 C -0.547 4.547 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.968 3.032 11 H -0.269 1.269 12 H -0.267 1.267 13 H -0.281 1.281 14 C 0.573 3.427 15 O -0.574 6.574 16 C -0.003 4.003 17 C -0.098 4.098 18 C -0.073 4.073 19 O -0.185 6.185 20 C 0.029 3.971 21 C -0.212 4.212 22 C 0.004 3.996 23 N -0.527 5.527 24 H 0.437 0.563 25 H 0.126 0.874 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.004 0.996 32 H 0.268 0.732 33 H 0.152 0.848 34 H 0.264 0.736 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -10.737 -19.745 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.247 4.247 3 C -0.007 4.007 4 N -0.319 5.319 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.071 0.929 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.792 3.208 11 H -0.193 1.193 12 H -0.192 1.192 13 H -0.207 1.207 14 C 0.362 3.638 15 O -0.454 6.454 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.124 4.124 19 O -0.083 6.083 20 C -0.037 4.037 21 C -0.233 4.233 22 C -0.110 4.110 23 N -0.142 5.142 24 H 0.289 0.711 25 H 0.144 0.856 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.279 0.721 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.457 -10.656 -18.999 21.832 hybrid contribution -0.168 1.060 0.681 1.271 sum -1.624 -9.596 -18.317 20.742 Atomic orbital electron populations 1.24255 0.94750 1.04003 0.93388 1.23328 0.97653 0.97353 1.06344 1.21212 0.92982 0.97850 0.88624 1.48107 1.15162 1.51928 1.16683 1.18868 0.95112 0.90795 0.80917 1.21694 1.38597 0.95532 1.02713 0.92901 1.25804 0.94801 1.03582 0.94487 1.70048 1.42205 1.37608 1.06548 0.85369 0.78331 0.78945 0.78162 1.19350 1.19198 1.20720 1.17314 0.81952 0.78663 0.85912 1.90795 1.52399 1.62628 1.39588 1.20009 0.91160 1.10422 0.89945 1.19930 0.96854 1.02873 0.92912 1.19263 0.90957 1.08288 0.93895 1.84015 1.38354 1.63089 1.22843 1.25162 0.87715 0.99518 0.91336 1.21015 1.01303 1.07857 0.93148 1.19777 0.92138 1.04152 0.94927 1.42752 1.12708 1.47701 1.11079 0.71126 0.85567 0.86934 0.87307 0.87924 0.89198 0.94953 0.97793 0.92257 0.83007 0.72052 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 14.32 67.78 0.97 -1.57 16 2 C -0.23 -5.81 7.86 25.64 0.20 -5.61 16 3 C 0.12 3.68 5.41 85.63 0.46 4.15 16 4 N -0.59 -26.03 2.47 -835.41 -2.06 -28.09 16 5 C 0.26 14.24 5.14 85.63 0.44 14.68 16 6 C -0.55 -31.51 9.39 25.60 0.24 -31.27 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.73 5.46 84.65 0.46 1.19 16 9 N -0.92 -55.30 13.29 21.44 0.28 -55.02 16 10 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 14 C 0.57 26.44 7.56 86.40 0.65 27.10 16 15 O -0.57 -31.71 16.45 -4.43 -0.07 -31.78 16 16 C 0.00 -0.10 6.61 40.20 0.27 0.16 16 17 C -0.10 -3.50 10.60 22.57 0.24 -3.26 16 18 C -0.07 -2.26 8.20 22.89 0.19 -2.07 16 19 O -0.18 -4.64 10.68 -11.49 -0.12 -4.77 16 20 C 0.03 0.44 12.02 66.96 0.80 1.25 16 21 C -0.21 -3.70 10.89 22.20 0.24 -3.45 16 22 C 0.00 0.12 8.11 39.32 0.32 0.44 16 23 N -0.53 -15.36 4.45 -176.19 -0.78 -16.14 16 24 H 0.44 10.83 3.48 -92.71 -0.32 10.51 16 25 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.11 2.12 7.84 -2.91 -0.02 2.09 16 27 H 0.11 2.85 7.29 -2.91 -0.02 2.83 16 28 H 0.10 3.21 7.66 -2.38 -0.02 3.19 16 29 H 0.09 2.54 5.18 -2.39 -0.01 2.53 16 30 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 31 H 0.00 0.25 7.40 -2.39 -0.02 0.23 16 32 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.15 5.38 8.06 -2.91 -0.02 5.35 16 34 H 0.26 0.73 8.06 -2.91 -0.02 0.70 16 35 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -77.29 305.01 5.56 -71.73 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.80 Total: 15.53 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.49 Total: 1.73 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -2.56 Total: -99.25 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.20 Total: -36.55 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -77.29 5.56 -71.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.859 kcal (2) G-P(sol) polarization free energy of solvation -77.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds