Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.84046 * 2 1 4 4 C 1.54589 * 110.78777 * 123.41899 * 2 1 3 5 5 C 1.51719 * 102.88347 * 143.50072 * 4 2 1 6 6 N 1.31141 * 126.26786 * 164.77221 * 5 4 2 7 7 C 1.34716 * 120.00129 * 186.41885 * 6 5 4 8 8 O 1.21790 * 120.00111 * 4.90963 * 7 6 5 9 9 C 1.47589 * 120.00117 * 184.91619 * 7 6 5 10 10 C 1.39214 * 120.27965 * 355.42505 * 9 7 6 11 11 C 1.38190 * 120.09587 * 179.97438 * 10 9 7 12 12 C 1.38858 * 120.67942 * 0.02562 * 11 10 9 13 13 C 1.37562 * 120.56616 * 359.72127 * 12 11 10 14 14 C 1.40738 * 119.87896 * 0.53214 * 13 12 11 15 15 C 1.40850 * 120.33050 * 179.74036 * 14 13 12 16 16 H 1.07998 * 119.99739 * 143.21573 * 15 14 13 17 17 C 1.40299 * 120.00100 * 323.21949 * 15 14 13 18 18 N 1.30621 * 120.00066 * 339.91100 * 17 15 14 19 19 Si 1.86803 * 120.00020 * 159.91573 * 17 15 14 20 20 H 1.48501 * 109.47165 * 60.00010 * 19 17 15 21 21 H 1.48492 * 109.46908 * 299.99495 * 19 17 15 22 22 H 1.48500 * 109.47036 * 179.97438 * 19 17 15 23 23 N 1.35123 * 107.46741 * 345.02376 * 5 4 2 24 24 O 1.41472 * 111.60092 * 358.39616 * 23 5 4 25 25 H 1.09003 * 109.46840 * 296.58017 * 1 2 3 26 26 H 1.09002 * 109.47665 * 56.58204 * 1 2 3 27 27 H 1.09005 * 109.47028 * 176.58381 * 1 2 3 28 28 H 1.09001 * 110.73200 * 25.14492 * 4 2 1 29 29 H 1.09005 * 110.72638 * 261.84600 * 4 2 1 30 30 H 1.07999 * 119.95364 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.66365 * 180.02562 * 11 10 9 32 32 H 1.07997 * 119.71687 * 179.97438 * 12 11 10 33 33 H 1.08002 * 120.06130 * 180.29977 * 13 12 11 34 34 H 0.97001 * 119.99696 * 354.51750 * 18 17 15 35 35 H 0.97001 * 124.19324 * 178.56940 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0786 -0.7960 1.2063 5 6 3.3102 -1.4721 0.6336 6 7 4.2764 -2.0340 1.3195 7 6 5.3771 -2.4852 0.6873 8 8 5.5156 -2.2919 -0.5072 9 6 6.4151 -3.2140 1.4420 10 6 6.3094 -3.3560 2.8229 11 6 7.2832 -4.0396 3.5257 12 6 8.3753 -4.5913 2.8691 13 6 8.5047 -4.4720 1.5048 14 6 7.5296 -3.7760 0.7662 15 6 7.6554 -3.6433 -0.6304 16 1 6.7771 -3.6808 -1.2576 17 6 8.9218 -3.4627 -1.2066 18 7 9.9155 -3.0300 -0.4774 19 14 9.1869 -3.8408 -3.0166 20 1 8.2938 -2.9839 -3.8373 21 1 8.8761 -5.2697 -3.2745 22 1 10.6016 -3.5686 -3.3771 23 7 3.2321 -1.3842 -0.7125 24 8 2.0410 -0.7413 -1.1243 25 1 -0.3633 0.4598 0.9191 26 1 -0.3634 0.5660 -0.8578 27 1 -0.3633 -1.0259 -0.0612 28 1 1.3528 -1.5366 1.5422 29 1 2.3507 -0.1240 2.0203 30 1 5.4651 -2.9313 3.3456 31 1 7.1940 -4.1460 4.5968 32 1 9.1274 -5.1220 3.4338 33 1 9.3550 -4.9084 1.0018 34 1 9.7608 -2.7582 0.4408 35 1 3.9076 -1.7224 -1.3210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867062645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = 14.642848 kcal Electronic energy + Delta-G solvation = -20588.311007 eV Core-core repulsion = 17360.524673 eV Total energy + Delta-G solvation = -3227.786334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42427 -38.71539 -37.06756 -34.33533 -33.81839 -32.98493 -30.83036 -29.68076 -29.18744 -27.91310 -25.29571 -23.20249 -22.01455 -21.24950 -20.62181 -19.27675 -17.85252 -17.54528 -16.72534 -15.73966 -15.30953 -14.70496 -14.54543 -14.16899 -14.09877 -13.73316 -13.47695 -13.17347 -12.96151 -12.69999 -12.51486 -12.29678 -12.07482 -11.79127 -11.53314 -11.16350 -10.87037 -10.85097 -10.38597 -10.24272 -10.17520 -9.88330 -9.43468 -9.03485 -8.42483 -8.27518 -7.68238 -7.54608 -7.14311 -4.44389 1.52553 2.32666 2.58714 2.82394 3.18466 3.30615 3.38728 3.86376 4.00812 4.03335 4.27641 4.34900 4.62735 4.73505 4.80989 5.22176 5.27275 5.36035 5.51775 5.59422 5.62617 5.77261 6.10954 6.25321 6.36715 6.69722 6.85422 6.89907 7.06935 7.36619 7.52072 7.63546 7.71029 7.85002 7.90009 8.12965 8.18496 8.26995 8.74228 8.84066 9.29620 10.04389 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.005668 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.719731 B = 4938.487024 C = 6307.751194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 H 0.090 0.910 4 C -0.112 4.112 5 C 0.436 3.564 6 N -0.608 5.608 7 C 0.529 3.471 8 O -0.553 6.553 9 C -0.247 4.247 10 C -0.018 4.018 11 C -0.263 4.263 12 C -0.074 4.074 13 C -0.203 4.203 14 C 0.119 3.881 15 C -0.468 4.468 16 H 0.099 0.901 17 C 0.032 3.968 18 N -0.792 5.792 19 Si 1.070 2.930 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.562 5.562 24 O -0.164 6.164 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.298 0.702 35 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 4.961 1.672 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.005 4.005 3 H 0.108 0.892 4 C -0.152 4.152 5 C 0.166 3.834 6 N -0.363 5.363 7 C 0.328 3.672 8 O -0.435 6.435 9 C -0.251 4.251 10 C -0.037 4.037 11 C -0.282 4.282 12 C -0.092 4.092 13 C -0.222 4.222 14 C 0.115 3.885 15 C -0.495 4.495 16 H 0.117 0.883 17 C -0.190 4.190 18 N -0.415 5.415 19 Si 0.893 3.107 20 H -0.200 1.200 21 H -0.200 1.200 22 H -0.199 1.199 23 N -0.260 5.260 24 O -0.169 6.169 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.316 0.684 Dipole moment (debyes) X Y Z Total from point charges -12.550 4.835 0.254 13.452 hybrid contribution -0.835 0.071 0.619 1.042 sum -13.385 4.907 0.873 14.283 Atomic orbital electron populations 1.21874 0.91357 1.03779 1.03413 1.23523 0.96169 0.96007 0.84839 0.89242 1.22262 0.93665 1.00109 0.99161 1.23624 0.93386 0.85635 0.80782 1.69651 1.04523 1.26052 1.36040 1.19739 0.84244 0.77729 0.85457 1.90369 1.79488 1.55737 1.17950 1.19113 1.01458 1.11742 0.92793 1.20929 0.95998 0.93546 0.93201 1.20374 0.98883 1.11086 0.97894 1.20781 0.96325 0.97650 0.94489 1.21203 1.02214 1.05182 0.93601 1.17593 0.89796 0.87929 0.93213 1.21046 0.96878 1.38997 0.92579 0.88283 1.27228 0.91362 0.92445 1.07941 1.70367 1.34520 1.24654 1.11944 0.83570 0.77065 0.77750 0.72313 1.19959 1.19969 1.19870 1.48525 1.14167 1.56377 1.06981 1.90904 1.29499 1.65195 1.31258 0.89956 0.91163 0.91134 0.86780 0.86454 0.87385 0.88806 0.88900 0.87745 0.88869 0.68365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.58 37.16 0.36 -0.59 16 2 C 0.05 0.52 4.38 -25.90 -0.11 0.40 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.20 6.59 -26.55 -0.18 -1.37 16 5 C 0.44 7.38 7.93 -154.30 -1.22 6.16 16 6 N -0.61 -12.63 9.64 -9.96 -0.10 -12.73 16 7 C 0.53 13.17 7.65 -12.47 -0.10 13.07 16 8 O -0.55 -14.42 10.97 5.11 0.06 -14.36 16 9 C -0.25 -6.44 5.93 -104.30 -0.62 -7.06 16 10 C -0.02 -0.42 9.57 -39.24 -0.38 -0.80 16 11 C -0.26 -5.87 10.03 -39.37 -0.39 -6.26 16 12 C -0.07 -1.69 10.01 -39.60 -0.40 -2.09 16 13 C -0.20 -5.21 7.97 -38.88 -0.31 -5.52 16 14 C 0.12 3.28 5.09 -106.55 -0.54 2.73 16 15 C -0.47 -13.06 7.54 -37.82 -0.29 -13.34 16 16 H 0.10 2.85 6.08 -52.49 -0.32 2.53 16 17 C 0.03 0.84 5.02 -17.29 -0.09 0.75 16 18 N -0.79 -21.58 12.68 55.57 0.70 -20.87 16 19 Si 1.07 22.72 29.98 -169.99 -5.10 17.62 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 N -0.56 -9.63 6.98 33.05 0.23 -9.40 16 24 O -0.16 -2.30 12.20 -11.41 -0.14 -2.44 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.11 1.01 7.91 -51.93 -0.41 0.59 16 29 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.11 2.30 7.54 -52.49 -0.40 1.90 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.10 2.71 7.18 -52.49 -0.38 2.33 16 34 H 0.30 8.36 6.76 -40.82 -0.28 8.09 16 35 H 0.46 8.82 6.16 -40.82 -0.25 8.57 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -31.66 299.52 -7.87 -39.53 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -3.78 Total: 12.06 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -4.26 Total: -13.92 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.84 Total: -43.00 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.08 Total: -16.80 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.10 Total: 17.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.66 -7.87 -39.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867062645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.170 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds