Wall clock time and date at job start Mon Mar 30 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.84046 * 2 1 4 4 C 1.54589 * 110.78777 * 123.41899 * 2 1 3 5 5 C 1.51719 * 102.88347 * 143.50072 * 4 2 1 6 6 N 1.31141 * 126.26786 * 164.77221 * 5 4 2 7 7 C 1.34716 * 120.00129 * 186.41885 * 6 5 4 8 8 O 1.21790 * 120.00111 * 4.90963 * 7 6 5 9 9 C 1.47589 * 120.00117 * 184.91619 * 7 6 5 10 10 C 1.39214 * 120.27965 * 355.42505 * 9 7 6 11 11 C 1.38190 * 120.09587 * 179.97438 * 10 9 7 12 12 C 1.38858 * 120.67942 * 0.02562 * 11 10 9 13 13 C 1.37562 * 120.56616 * 359.72127 * 12 11 10 14 14 C 1.40738 * 119.87896 * 0.53214 * 13 12 11 15 15 C 1.40850 * 120.33050 * 179.74036 * 14 13 12 16 16 H 1.07998 * 119.99739 * 143.21573 * 15 14 13 17 17 C 1.40299 * 120.00100 * 323.21949 * 15 14 13 18 18 N 1.30621 * 120.00066 * 339.91100 * 17 15 14 19 19 Si 1.86803 * 120.00020 * 159.91573 * 17 15 14 20 20 H 1.48501 * 109.47165 * 60.00010 * 19 17 15 21 21 H 1.48492 * 109.46908 * 299.99495 * 19 17 15 22 22 H 1.48500 * 109.47036 * 179.97438 * 19 17 15 23 23 N 1.35123 * 107.46741 * 345.02376 * 5 4 2 24 24 O 1.41472 * 111.60092 * 358.39616 * 23 5 4 25 25 H 1.09003 * 109.46840 * 296.58017 * 1 2 3 26 26 H 1.09002 * 109.47665 * 56.58204 * 1 2 3 27 27 H 1.09005 * 109.47028 * 176.58381 * 1 2 3 28 28 H 1.09001 * 110.73200 * 25.14492 * 4 2 1 29 29 H 1.09005 * 110.72638 * 261.84600 * 4 2 1 30 30 H 1.07999 * 119.95364 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.66365 * 180.02562 * 11 10 9 32 32 H 1.07997 * 119.71687 * 179.97438 * 12 11 10 33 33 H 1.08002 * 120.06130 * 180.29977 * 13 12 11 34 34 H 0.97001 * 119.99696 * 354.51750 * 18 17 15 35 35 H 0.97001 * 124.19324 * 178.56940 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0786 -0.7960 1.2063 5 6 3.3102 -1.4721 0.6336 6 7 4.2764 -2.0340 1.3195 7 6 5.3771 -2.4852 0.6873 8 8 5.5156 -2.2919 -0.5072 9 6 6.4151 -3.2140 1.4420 10 6 6.3094 -3.3560 2.8229 11 6 7.2832 -4.0396 3.5257 12 6 8.3753 -4.5913 2.8691 13 6 8.5047 -4.4720 1.5048 14 6 7.5296 -3.7760 0.7662 15 6 7.6554 -3.6433 -0.6304 16 1 6.7771 -3.6808 -1.2576 17 6 8.9218 -3.4627 -1.2066 18 7 9.9155 -3.0300 -0.4774 19 14 9.1869 -3.8408 -3.0166 20 1 8.2938 -2.9839 -3.8373 21 1 8.8761 -5.2697 -3.2745 22 1 10.6016 -3.5686 -3.3771 23 7 3.2321 -1.3842 -0.7125 24 8 2.0410 -0.7413 -1.1243 25 1 -0.3633 0.4598 0.9191 26 1 -0.3634 0.5660 -0.8578 27 1 -0.3633 -1.0259 -0.0612 28 1 1.3528 -1.5366 1.5422 29 1 2.3507 -0.1240 2.0203 30 1 5.4651 -2.9313 3.3456 31 1 7.1940 -4.1460 4.5968 32 1 9.1274 -5.1220 3.4338 33 1 9.3550 -4.9084 1.0018 34 1 9.7608 -2.7582 0.4408 35 1 3.9076 -1.7224 -1.3210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867062645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:36 Heat of formation + Delta-G solvation = -6.177398 kcal Electronic energy + Delta-G solvation = -20589.213840 eV Core-core repulsion = 17360.524673 eV Total energy + Delta-G solvation = -3228.689168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74997 -40.37568 -38.87009 -35.97679 -35.58661 -33.91677 -32.44078 -31.50178 -30.95502 -28.75424 -27.21493 -24.91649 -23.08430 -22.84794 -22.26798 -20.83072 -19.77844 -18.78106 -18.19033 -17.15923 -16.90701 -16.42419 -15.96032 -15.86119 -15.65271 -15.42394 -14.85005 -14.44831 -14.22940 -14.13736 -13.83648 -13.76718 -13.27218 -12.97959 -12.83322 -12.70773 -12.61562 -12.29690 -12.06944 -11.96719 -11.67236 -11.36016 -11.23185 -10.95568 -10.21678 -9.83148 -9.55267 -9.48118 -9.13206 -6.48879 -0.09663 0.83628 0.93170 1.09478 1.43294 1.59082 1.73672 2.27870 2.47261 2.66464 2.78522 3.03677 3.47302 3.56901 3.78923 3.97460 4.16774 4.37255 4.39916 4.60425 4.62176 4.66787 4.89329 4.95910 4.98448 5.04025 5.16580 5.27140 5.40081 5.48704 5.64749 5.78006 5.86787 5.93584 6.10885 6.26808 6.34433 6.54603 6.77270 6.84527 7.54931 8.00332 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.005668 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.719731 B = 4938.487024 C = 6307.751194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 H 0.103 0.897 4 C -0.102 4.102 5 C 0.434 3.566 6 N -0.628 5.628 7 C 0.522 3.478 8 O -0.583 6.583 9 C -0.272 4.272 10 C -0.022 4.022 11 C -0.249 4.249 12 C -0.068 4.068 13 C -0.226 4.226 14 C 0.095 3.905 15 C -0.510 4.510 16 H 0.077 0.923 17 C -0.001 4.001 18 N -0.815 5.815 19 Si 1.117 2.883 20 H -0.271 1.271 21 H -0.259 1.259 22 H -0.264 1.264 23 N -0.569 5.569 24 O -0.170 6.170 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.281 0.719 35 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.350 5.708 3.336 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 H 0.121 0.879 4 C -0.141 4.141 5 C 0.166 3.834 6 N -0.385 5.385 7 C 0.319 3.681 8 O -0.467 6.467 9 C -0.277 4.277 10 C -0.041 4.041 11 C -0.268 4.268 12 C -0.087 4.087 13 C -0.246 4.246 14 C 0.091 3.909 15 C -0.538 4.538 16 H 0.095 0.905 17 C -0.217 4.217 18 N -0.438 5.438 19 Si 0.934 3.066 20 H -0.196 1.196 21 H -0.183 1.183 22 H -0.188 1.188 23 N -0.261 5.261 24 O -0.175 6.175 25 H 0.132 0.868 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -15.043 5.609 1.933 16.171 hybrid contribution -0.407 -0.034 0.264 0.486 sum -15.450 5.575 2.197 16.571 Atomic orbital electron populations 1.21930 0.88268 1.04197 1.05330 1.24025 0.98355 0.95913 0.82760 0.87887 1.22554 0.90909 1.00712 0.99904 1.24642 0.94008 0.83614 0.81105 1.69614 1.04569 1.28681 1.35616 1.19980 0.85448 0.77490 0.85146 1.90356 1.80437 1.56875 1.19030 1.19632 1.01668 1.11880 0.94493 1.21229 0.97116 0.93530 0.92190 1.20887 0.97390 1.08612 0.99895 1.21188 0.97198 0.96781 0.93515 1.21191 1.02032 1.06290 0.95038 1.17980 0.90991 0.88206 0.93709 1.20983 0.96836 1.42876 0.93103 0.90457 1.28499 0.90761 0.91119 1.11295 1.70485 1.34777 1.27271 1.11302 0.83012 0.77418 0.78421 0.67725 1.19596 1.18344 1.18764 1.48581 1.14917 1.55388 1.07224 1.90931 1.27696 1.65573 1.33310 0.86818 0.90641 0.91301 0.84055 0.83644 0.85067 0.84607 0.85409 0.89132 0.90758 0.69910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.58 71.98 0.69 -0.52 16 2 C 0.05 0.75 4.38 31.13 0.14 0.89 16 3 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 4 C -0.10 -1.80 6.59 30.71 0.20 -1.59 16 5 C 0.43 14.22 7.93 138.24 1.10 15.32 16 6 N -0.63 -25.92 9.64 -303.64 -2.93 -28.85 16 7 C 0.52 26.81 7.65 86.72 0.66 27.47 16 8 O -0.58 -32.09 10.97 -4.64 -0.05 -32.14 16 9 C -0.27 -14.61 5.93 -19.66 -0.12 -14.73 16 10 C -0.02 -1.01 9.57 22.49 0.22 -0.80 16 11 C -0.25 -10.46 10.03 22.41 0.22 -10.23 16 12 C -0.07 -3.06 10.01 22.26 0.22 -2.83 16 13 C -0.23 -11.98 7.97 22.72 0.18 -11.80 16 14 C 0.10 5.47 5.09 -21.11 -0.11 5.37 16 15 C -0.51 -30.28 7.54 23.41 0.18 -30.11 16 16 H 0.08 4.79 6.08 -2.91 -0.02 4.77 16 17 C 0.00 -0.08 5.02 85.37 0.43 0.35 16 18 N -0.81 -46.68 12.68 21.89 0.28 -46.40 16 19 Si 1.12 47.73 29.98 68.60 2.06 49.79 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 23 N -0.57 -19.44 6.98 -49.34 -0.34 -19.79 16 24 O -0.17 -4.49 12.20 -38.50 -0.47 -4.96 16 25 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.14 1.84 7.91 -2.39 -0.02 1.82 16 29 H 0.15 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.13 5.31 7.54 -2.91 -0.02 5.29 16 31 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 33 H 0.09 4.94 7.18 -2.91 -0.02 4.91 16 34 H 0.28 16.71 6.76 -92.71 -0.63 16.08 16 35 H 0.44 17.88 6.16 -92.71 -0.57 17.31 16 Total: -1.00 -74.61 299.52 3.26 -71.35 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.70 Total: 34.21 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.01 Total: -23.22 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -2.99 Total: -95.03 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.52 Total: -37.10 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.06 Total: 49.79 kcal Total: -74.61 3.26 -71.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867062645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.173 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds