Wall clock time and date at job start Mon Mar 30 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17388 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47263 * 270.94789 * 3 2 1 5 5 C 1.36942 * 120.00288 * 268.71099 * 4 3 2 6 6 H 1.07992 * 119.99903 * 322.02563 * 5 4 3 7 7 C 1.38820 * 120.00176 * 142.01922 * 5 4 3 8 8 N 1.31612 * 119.99926 * 157.07035 * 7 5 4 9 9 Si 1.86798 * 119.99957 * 337.07331 * 7 5 4 10 10 H 1.48491 * 109.47422 * 95.69155 * 9 7 5 11 11 H 1.48502 * 109.47017 * 215.69797 * 9 7 5 12 12 H 1.48508 * 109.47119 * 335.69037 * 9 7 5 13 13 C 1.46498 * 120.00063 * 88.70697 * 4 3 2 14 14 C 1.50704 * 109.46962 * 90.00316 * 13 4 3 15 15 C 1.38189 * 119.53616 * 95.00542 * 14 13 4 16 16 C 1.38964 * 118.91404 * 179.97438 * 15 14 13 17 17 C 1.39312 * 118.56121 * 359.94673 * 16 15 14 18 18 C 1.38404 * 119.04707 * 0.11340 * 17 16 15 19 19 N 1.31899 * 119.53532 * 274.72401 * 14 13 4 20 20 O 1.35944 * 120.73609 * 180.19017 * 17 16 15 21 21 C 1.43244 * 116.54440 * 342.77132 * 20 17 16 22 22 C 1.53457 * 108.36533 * 46.18940 * 21 20 17 23 23 O 1.35632 * 120.39928 * 179.82838 * 16 15 14 24 24 H 4.40637 * 5.51380 * 180.02562 * 4 1 2 25 25 H 1.09008 * 109.46804 * 150.95438 * 3 2 1 26 26 H 1.08995 * 109.47274 * 30.95483 * 3 2 1 27 27 H 0.96994 * 120.00032 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47167 * 330.00054 * 13 4 3 29 29 H 1.09000 * 109.47188 * 210.00527 * 13 4 3 30 30 H 1.07997 * 120.54644 * 359.95774 * 15 14 13 31 31 H 1.08007 * 119.71954 * 179.90509 * 18 17 16 32 32 H 1.09003 * 109.68841 * 286.47016 * 21 20 17 33 33 H 1.09004 * 109.72016 * 165.92340 * 21 20 17 34 34 H 1.08994 * 109.69278 * 180.57928 * 22 21 20 35 35 H 1.09000 * 109.71937 * 60.01838 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 -0.0220 1.3810 5 6 3.3872 1.1531 2.0372 6 1 3.8241 1.9853 1.5054 7 6 3.0818 1.2745 3.3859 8 7 3.7002 2.1731 4.1223 9 14 1.7932 0.1626 4.1556 10 1 2.4600 -1.0027 4.7900 11 1 1.0361 0.9203 5.1841 12 1 0.8587 -0.3138 3.1042 13 6 3.3521 -1.3017 2.0600 14 6 4.7660 -1.7640 1.8189 15 6 5.7451 -1.4762 2.7507 16 6 7.0445 -1.9092 2.5156 17 6 7.3086 -2.6195 1.3466 18 6 6.2732 -2.8666 0.4620 19 7 5.0505 -2.4426 0.7242 20 8 8.5628 -3.0673 1.0741 21 6 9.6319 -2.4668 1.8145 22 6 9.2275 -2.4178 3.2940 23 8 8.0296 -1.6403 3.4082 24 1 -1.0500 -0.0002 0.0000 25 1 3.0088 0.8993 -0.4990 26 1 3.0097 -0.8804 -0.5286 27 1 3.4871 2.2577 5.0648 28 1 2.6555 -2.0435 1.6693 29 1 3.1879 -1.1776 3.1304 30 1 5.5045 -0.9235 3.6468 31 1 6.4660 -3.4150 -0.4483 32 1 9.8093 -1.4554 1.4487 33 1 10.5378 -3.0624 1.7011 34 1 10.0232 -1.9543 3.8771 35 1 9.0455 -3.4286 3.6592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:58 Heat of formation + Delta-G solvation = 53.052063 kcal Electronic energy + Delta-G solvation = -20920.200020 eV Core-core repulsion = 17694.079234 eV Total energy + Delta-G solvation = -3226.120785 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26085 -38.70795 -37.21195 -36.12830 -32.58419 -31.95243 -31.58719 -30.59605 -28.97171 -26.99609 -26.01688 -24.29949 -23.19442 -21.77994 -20.55813 -18.59098 -17.57104 -17.52515 -17.33596 -16.45716 -15.64927 -15.27000 -15.03494 -14.66972 -14.39578 -14.29134 -14.08496 -13.73743 -13.31675 -13.20812 -12.93763 -12.37461 -12.22436 -11.78520 -11.65676 -11.21757 -11.04999 -10.70822 -10.54633 -10.12473 -9.72262 -9.64641 -9.30689 -9.21094 -8.62612 -8.60020 -8.04132 -7.08149 -6.09574 -3.52885 1.46853 1.60579 3.04408 3.24690 3.25684 3.43386 3.52801 3.56753 3.66732 4.13811 4.16950 4.45228 4.66275 4.70979 4.79577 4.85986 5.10366 5.14512 5.24481 5.32411 5.38128 5.43234 5.73110 5.79587 6.14592 6.26502 6.34946 6.36697 6.42906 6.55854 6.72956 6.78064 6.98663 7.47359 7.91983 8.27086 8.45247 8.46266 8.83761 9.57978 9.96303 11.04665 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.006250 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.440164 B = 4479.042387 C = 5336.685997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.163 4.163 3 C 0.239 3.761 4 N -0.582 5.582 5 C -0.273 4.273 6 H 0.083 0.917 7 C 0.044 3.956 8 N -0.888 5.888 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.259 1.259 13 C 0.184 3.816 14 C 0.135 3.865 15 C -0.138 4.138 16 C 0.089 3.911 17 C -0.024 4.024 18 C 0.106 3.894 19 N -0.467 5.467 20 O -0.306 6.306 21 C 0.021 3.979 22 C 0.019 3.981 23 O -0.300 6.300 24 H 0.203 0.797 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.265 0.735 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -10.616 -3.667 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.165 4.165 3 C 0.114 3.886 4 N -0.301 5.301 5 C -0.402 4.402 6 H 0.101 0.899 7 C -0.158 4.158 8 N -0.528 5.528 9 Si 0.691 3.309 10 H -0.210 1.210 11 H -0.225 1.225 12 H -0.183 1.183 13 C 0.058 3.942 14 C -0.004 4.004 15 C -0.160 4.160 16 C 0.036 3.964 17 C -0.072 4.072 18 C -0.053 4.053 19 N -0.180 5.180 20 O -0.220 6.220 21 C -0.055 4.055 22 C -0.056 4.056 23 O -0.212 6.212 24 H 0.220 0.780 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.517 -10.655 -4.035 14.225 hybrid contribution 0.102 -0.197 1.404 1.421 sum 8.619 -10.852 -2.631 14.106 Atomic orbital electron populations 1.24663 0.95766 1.04290 1.03168 1.25083 0.96135 0.97443 0.97882 1.18240 0.81665 1.01202 0.87481 1.44067 1.72863 1.01591 1.11600 1.18816 1.36560 0.91665 0.93136 0.89929 1.25466 0.97106 0.96432 0.96792 1.69867 1.39855 1.36366 1.06695 0.87146 0.84393 0.80080 0.79236 1.21027 1.22484 1.18346 1.20221 0.87996 0.88112 0.97898 1.22298 0.98936 0.90930 0.88237 1.21477 0.88792 1.02447 1.03244 1.19161 0.89662 0.99032 0.88538 1.19892 0.86794 1.04711 0.95783 1.22094 0.86278 0.99245 0.97648 1.67653 1.19248 1.11263 1.19865 1.86247 1.12423 1.61163 1.62136 1.23581 0.89973 1.00474 0.91512 1.23643 0.87210 0.97303 0.97486 1.86309 1.24016 1.58782 1.52107 0.78012 0.90393 0.90536 0.92465 0.91693 0.91129 0.83474 0.82344 0.90550 0.86291 0.86168 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.95 19.25 29.55 0.57 -4.38 16 2 C -0.16 -3.39 13.68 -37.12 -0.51 -3.90 16 3 C 0.24 4.95 6.14 -6.83 -0.04 4.91 16 4 N -0.58 -13.75 2.01 -177.95 -0.36 -14.11 16 5 C -0.27 -7.45 9.90 -15.05 -0.15 -7.60 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.04 1.23 5.29 -17.43 -0.09 1.14 16 8 N -0.89 -26.23 13.97 55.49 0.78 -25.45 16 9 Si 0.86 21.59 25.10 -169.99 -4.27 17.32 16 10 H -0.28 -6.75 6.68 56.52 0.38 -6.37 16 11 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 12 H -0.26 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.18 4.05 4.82 -5.19 -0.03 4.03 16 14 C 0.14 2.79 6.36 -82.58 -0.53 2.26 16 15 C -0.14 -2.84 9.68 -39.33 -0.38 -3.22 16 16 C 0.09 1.63 6.52 -38.91 -0.25 1.37 16 17 C -0.02 -0.41 6.50 -39.12 -0.25 -0.66 16 18 C 0.11 1.75 11.14 -17.40 -0.19 1.56 16 19 N -0.47 -8.83 10.26 -9.38 -0.10 -8.92 16 20 O -0.31 -4.31 10.45 -32.06 -0.33 -4.65 16 21 C 0.02 0.21 7.25 37.39 0.27 0.48 16 22 C 0.02 0.21 7.26 37.39 0.27 0.48 16 23 O -0.30 -4.96 10.44 -31.09 -0.32 -5.28 16 24 H 0.20 3.04 7.80 -54.09 -0.42 2.62 16 25 H 0.08 1.57 8.03 -51.92 -0.42 1.15 16 26 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.06 1.33 8.07 -51.93 -0.42 0.92 16 29 H 0.07 1.65 3.27 -51.93 -0.17 1.48 16 30 H 0.15 3.23 8.06 -52.49 -0.42 2.80 16 31 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -32.05 307.22 -5.25 -37.30 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.97 Total: 2.68 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.31 Total: -3.53 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.32 Total: -48.48 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.66 Total: -9.93 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.27 Total: 17.32 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.05 -5.25 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.356 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds