Wall clock time and date at job start Mon Mar 30 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17388 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47263 * 270.94789 * 3 2 1 5 5 C 1.36942 * 120.00288 * 268.71099 * 4 3 2 6 6 H 1.07992 * 119.99903 * 322.02563 * 5 4 3 7 7 C 1.38820 * 120.00176 * 142.01922 * 5 4 3 8 8 N 1.31612 * 119.99926 * 157.07035 * 7 5 4 9 9 Si 1.86798 * 119.99957 * 337.07331 * 7 5 4 10 10 H 1.48491 * 109.47422 * 95.69155 * 9 7 5 11 11 H 1.48502 * 109.47017 * 215.69797 * 9 7 5 12 12 H 1.48508 * 109.47119 * 335.69037 * 9 7 5 13 13 C 1.46498 * 120.00063 * 88.70697 * 4 3 2 14 14 C 1.50704 * 109.46962 * 90.00316 * 13 4 3 15 15 C 1.38189 * 119.53616 * 95.00542 * 14 13 4 16 16 C 1.38964 * 118.91404 * 179.97438 * 15 14 13 17 17 C 1.39312 * 118.56121 * 359.94673 * 16 15 14 18 18 C 1.38404 * 119.04707 * 0.11340 * 17 16 15 19 19 N 1.31899 * 119.53532 * 274.72401 * 14 13 4 20 20 O 1.35944 * 120.73609 * 180.19017 * 17 16 15 21 21 C 1.43244 * 116.54440 * 342.77132 * 20 17 16 22 22 C 1.53457 * 108.36533 * 46.18940 * 21 20 17 23 23 O 1.35632 * 120.39928 * 179.82838 * 16 15 14 24 24 H 4.40637 * 5.51380 * 180.02562 * 4 1 2 25 25 H 1.09008 * 109.46804 * 150.95438 * 3 2 1 26 26 H 1.08995 * 109.47274 * 30.95483 * 3 2 1 27 27 H 0.96994 * 120.00032 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47167 * 330.00054 * 13 4 3 29 29 H 1.09000 * 109.47188 * 210.00527 * 13 4 3 30 30 H 1.07997 * 120.54644 * 359.95774 * 15 14 13 31 31 H 1.08007 * 119.71954 * 179.90509 * 18 17 16 32 32 H 1.09003 * 109.68841 * 286.47016 * 21 20 17 33 33 H 1.09004 * 109.72016 * 165.92340 * 21 20 17 34 34 H 1.08994 * 109.69278 * 180.57928 * 22 21 20 35 35 H 1.09000 * 109.71937 * 60.01838 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 -0.0220 1.3810 5 6 3.3872 1.1531 2.0372 6 1 3.8241 1.9853 1.5054 7 6 3.0818 1.2745 3.3859 8 7 3.7002 2.1731 4.1223 9 14 1.7932 0.1626 4.1556 10 1 2.4600 -1.0027 4.7900 11 1 1.0361 0.9203 5.1841 12 1 0.8587 -0.3138 3.1042 13 6 3.3521 -1.3017 2.0600 14 6 4.7660 -1.7640 1.8189 15 6 5.7451 -1.4762 2.7507 16 6 7.0445 -1.9092 2.5156 17 6 7.3086 -2.6195 1.3466 18 6 6.2732 -2.8666 0.4620 19 7 5.0505 -2.4426 0.7242 20 8 8.5628 -3.0673 1.0741 21 6 9.6319 -2.4668 1.8145 22 6 9.2275 -2.4178 3.2940 23 8 8.0296 -1.6403 3.4082 24 1 -1.0500 -0.0002 0.0000 25 1 3.0088 0.8993 -0.4990 26 1 3.0097 -0.8804 -0.5286 27 1 3.4871 2.2577 5.0648 28 1 2.6555 -2.0435 1.6693 29 1 3.1879 -1.1776 3.1304 30 1 5.5045 -0.9235 3.6468 31 1 6.4660 -3.4150 -0.4483 32 1 9.8093 -1.4554 1.4487 33 1 10.5378 -3.0624 1.7011 34 1 10.0232 -1.9543 3.8771 35 1 9.0455 -3.4286 3.6592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897164128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:58 Heat of formation + Delta-G solvation = 31.578729 kcal Electronic energy + Delta-G solvation = -20921.131173 eV Core-core repulsion = 17694.079234 eV Total energy + Delta-G solvation = -3227.051939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.49786 -40.08132 -38.39377 -37.85930 -34.35824 -33.57567 -32.98612 -32.13446 -30.15677 -28.54872 -27.79764 -25.58011 -24.58046 -23.55391 -21.86155 -19.82742 -19.20028 -18.94423 -18.70650 -18.00028 -17.30206 -16.65895 -16.35754 -16.12881 -15.71233 -15.57748 -15.51856 -15.16764 -15.04404 -14.74027 -14.38123 -14.15287 -13.80508 -13.32225 -13.15381 -12.77361 -12.61545 -12.10742 -12.05746 -11.75139 -11.70288 -11.27512 -10.85894 -10.71647 -10.61038 -10.04476 -9.36922 -9.00839 -8.25077 -5.66192 0.04964 0.19531 1.25827 1.38683 1.51620 1.91144 1.98564 2.11588 2.18059 2.37389 2.67299 3.06470 3.14238 3.38881 3.55777 3.57934 3.81059 3.89817 3.93060 4.07793 4.19461 4.31162 4.48203 4.55211 4.64064 4.72459 4.76774 4.83290 4.93169 4.93433 5.28807 5.33368 5.76705 5.87274 6.12852 6.22776 6.83192 6.93850 7.00860 7.50545 7.93880 8.93481 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.006250 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.440164 B = 4479.042387 C = 5336.685997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.212 4.212 3 C 0.242 3.758 4 N -0.592 5.592 5 C -0.262 4.262 6 H 0.047 0.953 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.921 3.079 10 H -0.270 1.270 11 H -0.303 1.303 12 H -0.256 1.256 13 C 0.186 3.814 14 C 0.122 3.878 15 C -0.166 4.166 16 C 0.086 3.914 17 C -0.013 4.013 18 C 0.109 3.891 19 N -0.473 5.473 20 O -0.305 6.305 21 C 0.015 3.985 22 C 0.009 3.991 23 O -0.324 6.324 24 H 0.241 0.759 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.265 0.735 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.196 0.804 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 -12.984 -4.752 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.214 4.214 3 C 0.118 3.882 4 N -0.312 5.312 5 C -0.391 4.391 6 H 0.064 0.936 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.749 3.251 10 H -0.197 1.197 11 H -0.232 1.232 12 H -0.180 1.180 13 C 0.060 3.940 14 C -0.016 4.016 15 C -0.187 4.187 16 C 0.033 3.967 17 C -0.060 4.060 18 C -0.049 4.049 19 N -0.187 5.187 20 O -0.219 6.219 21 C -0.060 4.060 22 C -0.065 4.065 23 O -0.237 6.237 24 H 0.257 0.743 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.213 0.787 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.296 -13.057 -5.138 16.831 hybrid contribution 0.089 0.472 1.640 1.709 sum 9.385 -12.585 -3.498 16.084 Atomic orbital electron populations 1.25569 0.96725 1.02129 1.00697 1.25163 0.96713 0.99515 1.00047 1.18197 0.82316 1.01855 0.85853 1.44086 1.73780 1.00975 1.12379 1.18615 1.35207 0.92185 0.93099 0.93575 1.25937 0.98682 0.98065 0.97310 1.69973 1.41742 1.38995 1.06995 0.86197 0.81877 0.78788 0.78264 1.19672 1.23155 1.17991 1.20117 0.89538 0.87590 0.96725 1.21908 0.98038 0.92447 0.89240 1.21316 0.90608 1.03938 1.02882 1.19142 0.89361 0.98735 0.89483 1.19909 0.88226 1.03231 0.94681 1.22672 0.85403 0.98314 0.98557 1.67623 1.20698 1.11356 1.18997 1.86255 1.11858 1.61119 1.62653 1.23999 0.90085 1.01448 0.90434 1.24138 0.85830 0.97817 0.98746 1.86274 1.25364 1.60044 1.52013 0.74268 0.90810 0.88799 0.92578 0.90242 0.92882 0.86281 0.78706 0.90640 0.81563 0.82701 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.27 19.25 74.32 1.43 -6.84 16 2 C -0.21 -8.60 13.68 31.13 0.43 -8.17 16 3 C 0.24 10.03 6.14 84.58 0.52 10.55 16 4 N -0.59 -28.45 2.01 -716.90 -1.44 -29.89 16 5 C -0.26 -14.83 9.90 84.03 0.83 -14.00 16 6 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 7 C 0.00 -0.10 5.29 84.87 0.45 0.35 16 8 N -0.93 -57.62 13.97 21.65 0.30 -57.32 16 9 Si 0.92 45.80 25.10 68.60 1.72 47.52 16 10 H -0.27 -12.70 6.68 99.48 0.66 -12.04 16 11 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.19 8.26 4.82 85.63 0.41 8.67 16 14 C 0.12 5.09 6.36 42.54 0.27 5.36 16 15 C -0.17 -7.05 9.68 22.43 0.22 -6.83 16 16 C 0.09 3.13 6.52 22.70 0.15 3.28 16 17 C -0.01 -0.39 6.50 22.57 0.15 -0.25 16 18 C 0.11 3.37 11.14 84.70 0.94 4.31 16 19 N -0.47 -17.38 10.26 -183.60 -1.88 -19.26 16 20 O -0.31 -7.58 10.45 -80.97 -0.85 -8.42 16 21 C 0.02 0.26 7.25 72.14 0.52 0.78 16 22 C 0.01 0.17 7.26 72.14 0.52 0.69 16 23 O -0.32 -10.52 10.44 -77.51 -0.81 -11.33 16 24 H 0.24 6.23 7.80 -4.42 -0.03 6.19 16 25 H 0.07 3.04 8.03 -2.38 -0.02 3.02 16 26 H 0.09 3.49 8.08 -2.39 -0.02 3.47 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 28 H 0.08 3.22 8.07 -2.39 -0.02 3.20 16 29 H 0.05 2.52 3.27 -2.39 -0.01 2.51 16 30 H 0.12 5.62 8.06 -2.91 -0.02 5.59 16 31 H 0.20 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.17 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.18 307.22 4.95 -67.24 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.06 Total: 13.56 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.84 Total: -2.09 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -3.02 Total: -106.48 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.66 Total: -19.75 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.72 Total: 47.52 kcal Total: -72.18 4.95 -67.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.815 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds