Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.52262 * 2 1 4 4 C 1.45865 * 109.52017 * 120.13056 * 2 1 3 5 5 C 1.53023 * 115.25985 * 184.11558 * 4 2 1 6 6 N 1.45543 * 106.89434 * 267.49634 * 5 4 2 7 7 C 1.46896 * 110.99918 * 227.36010 * 6 5 4 8 8 C 1.50700 * 109.47417 * 170.00254 * 7 6 5 9 9 O 1.21290 * 119.99839 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00280 * 180.02562 * 8 7 6 11 11 C 1.37092 * 120.00156 * 179.97438 * 10 8 7 12 12 H 1.08008 * 119.99991 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00320 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99989 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47471 * 59.99855 * 15 13 11 17 17 H 1.48501 * 109.47254 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47418 * 299.99746 * 15 13 11 19 19 C 1.46859 * 110.43608 * 103.81200 * 6 5 4 20 20 C 1.53616 * 116.10568 * 318.07687 * 19 6 5 21 21 S 1.80170 * 113.03827 * 315.59748 * 20 19 6 22 22 O 1.42097 * 109.46897 * 328.68684 * 21 20 19 23 23 H 1.09001 * 109.46801 * 299.86817 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.86414 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.86705 * 1 2 3 26 26 H 1.08991 * 108.32516 * 305.61652 * 4 2 1 27 27 H 1.08996 * 108.32265 * 62.61791 * 4 2 1 28 28 H 1.09002 * 109.96857 * 26.84211 * 5 4 2 29 29 H 1.09004 * 109.96507 * 148.15178 * 5 4 2 30 30 H 1.09006 * 109.47495 * 290.00714 * 7 6 5 31 31 H 1.09008 * 109.47254 * 50.00263 * 7 6 5 32 32 H 0.97008 * 119.99820 * 359.97438 * 10 8 7 33 33 H 0.96999 * 120.00162 * 179.97438 * 14 13 11 34 34 H 1.09007 * 108.15620 * 79.79664 * 19 6 5 35 35 H 1.08997 * 108.15464 * 196.56308 * 19 6 5 36 36 H 1.09005 * 108.76894 * 76.51705 * 20 19 6 37 37 H 1.09002 * 108.77169 * 194.67366 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0175 -0.6901 1.1891 5 6 3.5366 -0.6816 1.3723 6 7 4.0446 -1.8947 0.7489 7 6 4.9910 -2.5854 1.6350 8 6 5.3058 -3.9468 1.0707 9 8 4.7918 -4.3066 0.0326 10 7 6.1575 -4.7650 1.7199 11 6 6.4434 -6.0037 1.2068 12 1 5.9864 -6.3238 0.2820 13 6 7.3219 -6.8471 1.8758 14 7 7.8791 -6.4571 3.0002 15 14 7.7120 -8.5346 1.1762 16 1 8.3159 -8.3840 -0.1721 17 1 8.6692 -9.2325 2.0716 18 1 6.4614 -9.3286 1.0725 19 6 4.6658 -1.5848 -0.5453 20 6 3.9198 -0.5728 -1.4280 21 16 2.1443 -0.8712 -1.4966 22 8 1.8929 -2.2641 -1.3705 23 1 -0.3633 0.5118 0.8912 24 1 -0.3633 0.5159 -0.8888 25 1 -0.3633 -1.0277 -0.0024 26 1 1.5641 -0.2259 2.0647 27 1 1.6834 -1.7267 1.1447 28 1 3.9654 0.1945 0.8858 29 1 3.7835 -0.6773 2.4340 30 1 5.9090 -2.0025 1.7113 31 1 4.5477 -2.6959 2.6247 32 1 6.5683 -4.4774 2.5503 33 1 8.4922 -7.0459 3.4675 34 1 5.6674 -1.1979 -0.3574 35 1 4.7628 -2.5140 -1.1066 36 1 4.0921 0.4293 -1.0352 37 1 4.3235 -0.6247 -2.4391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116782245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = -90.897795 kcal Electronic energy + Delta-G solvation = -19924.946121 eV Core-core repulsion = 16828.027153 eV Total energy + Delta-G solvation = -3096.918968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63463 -38.94148 -36.47888 -36.17974 -35.66847 -33.38940 -32.14392 -30.48584 -28.03403 -26.03891 -24.78653 -23.09374 -21.52044 -21.04458 -19.96977 -18.25036 -17.95155 -17.14995 -17.04000 -16.65274 -16.34515 -15.76288 -15.68718 -15.41146 -14.97917 -14.67125 -14.30606 -14.01914 -13.81760 -13.54369 -13.41781 -13.10079 -12.98679 -12.79202 -12.54656 -12.49221 -12.38799 -12.16595 -11.97744 -11.91629 -11.68745 -11.51269 -10.61904 -10.35008 -10.07357 -9.25734 -8.93649 -8.52493 -6.01844 0.93263 1.34149 1.35361 1.47168 1.87489 1.98168 2.23603 2.69647 3.07413 3.13125 3.25996 3.80331 3.91469 3.95842 4.10260 4.20654 4.24736 4.38503 4.42012 4.44602 4.56404 4.63490 4.75528 4.85018 4.95834 5.05872 5.11146 5.22900 5.33201 5.34239 5.44381 5.79092 5.98600 6.26087 6.54995 7.06950 7.48581 8.07038 8.64962 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.036035 B = 0.004305 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.829005 B = 6502.055840 C = 6752.699054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.391 4.391 3 H 0.160 0.840 4 C -0.112 4.112 5 C 0.033 3.967 6 N -0.537 5.537 7 C 0.060 3.940 8 C 0.434 3.566 9 O -0.613 6.613 10 N -0.574 5.574 11 C -0.337 4.337 12 H 0.072 0.928 13 C -0.011 4.011 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.271 1.271 17 H -0.264 1.264 18 H -0.275 1.275 19 C 0.059 3.941 20 C -0.449 4.449 21 S 1.288 4.712 22 O -0.901 6.901 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.396 0.604 33 H 0.279 0.721 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.148 0.852 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 22.058 -5.008 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.508 4.508 3 H 0.178 0.822 4 C -0.151 4.151 5 C -0.095 4.095 6 N -0.262 5.262 7 C -0.071 4.071 8 C 0.221 3.779 9 O -0.499 6.499 10 N -0.212 5.212 11 C -0.467 4.467 12 H 0.091 0.909 13 C -0.211 4.211 14 N -0.561 5.561 15 Si 0.817 3.183 16 H -0.196 1.196 17 H -0.188 1.188 18 H -0.200 1.200 19 C -0.069 4.069 20 C -0.585 4.585 21 S 1.486 4.514 22 O -0.896 6.896 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.166 0.834 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.640 20.869 -6.330 24.265 hybrid contribution 2.215 -1.663 2.315 3.609 sum -8.425 19.206 -4.015 21.354 Atomic orbital electron populations 1.21528 0.91097 1.01166 1.04867 1.26254 1.03512 1.10137 1.10887 0.82220 1.20324 0.95166 0.99939 0.99693 1.22427 0.95437 0.91131 1.00482 1.61679 1.37010 1.24206 1.03345 1.21884 0.96338 0.91953 0.96903 1.20910 0.82165 0.88447 0.86397 1.90524 1.55299 1.77403 1.26660 1.41910 1.40593 1.14767 1.23932 1.19589 1.26023 0.92872 1.08185 0.90947 1.26042 0.95655 1.03383 0.95976 1.69660 1.30602 1.39257 1.16534 0.84984 0.78256 0.76812 0.78218 1.19638 1.18824 1.20009 1.21899 0.95810 0.98597 0.90630 1.27804 1.20048 1.05056 1.05606 1.69290 0.86825 0.92051 1.03270 1.93136 1.80493 1.32807 1.83185 0.90623 0.88241 0.95606 0.90547 0.95367 0.89418 0.89864 0.90875 0.87479 0.77011 0.91136 0.95308 0.94149 0.83395 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.15 71.98 0.66 -1.21 16 2 C -0.39 -6.28 2.88 28.41 0.08 -6.20 16 3 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.11 -2.70 4.31 28.41 0.12 -2.58 16 5 C 0.03 0.80 5.42 86.57 0.47 1.27 16 6 N -0.54 -19.72 3.72 -903.17 -3.36 -23.08 16 7 C 0.06 2.37 5.21 85.56 0.45 2.82 16 8 C 0.43 23.26 7.56 87.66 0.66 23.92 16 9 O -0.61 -38.77 13.96 -3.06 -0.04 -38.81 16 10 N -0.57 -32.13 5.29 -306.98 -1.62 -33.75 16 11 C -0.34 -20.63 9.68 84.04 0.81 -19.82 16 12 H 0.07 4.77 7.16 -2.91 -0.02 4.75 16 13 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 14 N -0.92 -51.79 13.05 21.66 0.28 -51.51 16 15 Si 0.99 45.36 29.55 68.60 2.03 47.38 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.06 2.08 4.47 86.52 0.39 2.46 16 20 C -0.45 -9.37 5.60 72.19 0.40 -8.97 16 21 S 1.29 27.60 12.94 -56.49 -0.73 26.86 16 22 O -0.90 -37.49 17.14 -148.98 -2.55 -40.05 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 1.50 8.07 -2.39 -0.02 1.48 16 27 H 0.03 0.99 7.48 -2.39 -0.02 0.97 16 28 H 0.09 1.54 6.06 -2.39 -0.01 1.53 16 29 H 0.08 1.85 7.43 -2.39 -0.02 1.83 16 30 H 0.07 2.49 7.90 -2.38 -0.02 2.47 16 31 H 0.11 3.79 7.85 -2.38 -0.02 3.77 16 32 H 0.40 20.80 7.90 -92.70 -0.73 20.06 16 33 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.03 0.94 7.78 -2.38 -0.02 0.93 16 35 H 0.04 1.92 6.16 -2.39 -0.01 1.91 16 36 H 0.15 1.66 7.03 -2.50 -0.02 1.64 16 37 H 0.14 2.36 8.14 -2.50 -0.02 2.34 16 Total: -1.00 -93.25 306.55 -1.15 -94.40 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.34 Total: 27.00 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 4.51 Total: -8.44 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.70 Total: -108.34 kcal Atomic # 8 Polarization: -76.26 SS G_CDS: -2.60 Total: -78.86 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 27.60 SS G_CDS: -0.73 Total: 26.86 kcal Total: -93.25 -1.15 -94.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116782245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.497 kcal (2) G-P(sol) polarization free energy of solvation -93.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds