Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.58124 * 2 1 4 4 C 1.45859 * 109.52888 * 120.16848 * 2 1 3 5 5 C 1.53020 * 115.26728 * 184.11819 * 4 2 1 6 6 N 1.45542 * 106.89127 * 267.49443 * 5 4 2 7 7 C 1.46894 * 110.99837 * 227.35503 * 6 5 4 8 8 C 1.50697 * 109.47127 * 66.27159 * 7 6 5 9 9 O 1.21290 * 120.00052 * 5.80827 * 8 7 6 10 10 N 1.34781 * 120.00014 * 185.81052 * 8 7 6 11 11 C 1.37100 * 119.99611 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00520 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99650 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99854 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99998 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47744 * 89.99378 * 15 13 11 17 17 H 1.48507 * 109.47255 * 209.99722 * 15 13 11 18 18 H 1.48503 * 109.47114 * 329.99127 * 15 13 11 19 19 C 1.46864 * 110.43405 * 103.80816 * 6 5 4 20 20 C 1.53615 * 116.10911 * 318.07614 * 19 6 5 21 21 S 1.80175 * 113.03591 * 315.59552 * 20 19 6 22 22 O 1.42108 * 109.47031 * 201.15770 * 21 20 19 23 23 H 1.08997 * 109.46907 * 180.16893 * 1 2 3 24 24 H 1.09005 * 109.47330 * 300.16639 * 1 2 3 25 25 H 1.09000 * 109.47716 * 60.16364 * 1 2 3 26 26 H 1.09002 * 108.32299 * 305.61540 * 4 2 1 27 27 H 1.09000 * 108.32058 * 62.61437 * 4 2 1 28 28 H 1.09001 * 109.96782 * 26.84179 * 5 4 2 29 29 H 1.08994 * 109.97098 * 148.06153 * 5 4 2 30 30 H 1.09008 * 109.47242 * 186.27141 * 7 6 5 31 31 H 1.09000 * 109.47406 * 306.27197 * 7 6 5 32 32 H 0.96997 * 119.99809 * 359.97438 * 10 8 7 33 33 H 0.96997 * 119.99958 * 180.02562 * 14 13 11 34 34 H 1.09004 * 108.15486 * 79.80270 * 19 6 5 35 35 H 1.08991 * 108.15542 * 196.56101 * 19 6 5 36 36 H 1.08995 * 108.77026 * 194.67845 * 20 19 6 37 37 H 1.09007 * 108.76908 * 76.51214 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0175 -0.6908 1.1885 5 6 3.5367 -0.6824 1.3717 6 7 4.0447 -1.8951 0.7475 7 6 4.9912 -2.5862 1.6331 8 6 4.2615 -3.0937 2.8501 9 8 3.0549 -2.9924 2.9198 10 7 4.9498 -3.6601 3.8611 11 6 4.2860 -4.1213 4.9684 12 1 3.2116 -4.0312 5.0305 13 6 4.9955 -4.7057 6.0105 14 7 4.3592 -5.1482 7.0717 15 14 6.8538 -4.8622 5.9028 16 1 7.4871 -3.6500 6.4814 17 1 7.2944 -6.0607 6.6611 18 1 7.2573 -5.0006 4.4804 19 6 4.6657 -1.5842 -0.5465 20 6 3.9196 -0.5717 -1.4286 21 16 2.1441 -0.8702 -1.4973 22 8 1.6047 -0.2534 -2.6583 23 1 -0.3633 -1.0276 0.0030 24 1 -0.3634 0.5164 0.8885 25 1 -0.3634 0.5113 -0.8914 26 1 1.5642 -0.2271 2.0646 27 1 1.6835 -1.7274 1.1435 28 1 3.9654 0.1941 0.8858 29 1 3.7836 -0.6772 2.4333 30 1 5.4393 -3.4259 1.1017 31 1 5.7732 -1.8924 1.9415 32 1 5.9148 -3.7413 3.8051 33 1 4.8545 -5.5558 7.7992 34 1 5.6673 -1.1976 -0.3584 35 1 4.7628 -2.5130 -1.1085 36 1 4.3233 -0.6231 -2.4397 37 1 4.0919 0.4301 -1.0351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116782247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = -55.583547 kcal Electronic energy + Delta-G solvation = -19808.865945 eV Core-core repulsion = 16713.478317 eV Total energy + Delta-G solvation = -3095.387628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20271 -37.41859 -35.63249 -34.96938 -33.92463 -31.69656 -31.15417 -29.33940 -26.66591 -24.12538 -23.84020 -22.11871 -20.34605 -19.33422 -18.32573 -17.31042 -16.46284 -16.21868 -15.71427 -15.11478 -14.91092 -14.69806 -14.40494 -14.14344 -13.47995 -13.30870 -13.09894 -12.93163 -12.63470 -12.48339 -12.20286 -12.02229 -11.83115 -11.65433 -11.42074 -11.18666 -10.80611 -10.73144 -10.61126 -10.60545 -9.98422 -9.76972 -9.55450 -8.57235 -8.25856 -8.17769 -7.92544 -6.31661 -3.82887 1.47709 2.56327 3.01265 3.05340 3.14428 3.73866 3.76417 3.83210 4.09457 4.62415 4.72102 4.77152 4.84019 5.00260 5.16558 5.22839 5.39691 5.41342 5.50829 5.58044 5.67385 5.71610 5.75289 5.82979 5.86238 5.93937 6.10202 6.20409 6.27202 6.73684 7.06347 7.25999 7.57677 8.14046 8.59706 8.95208 9.42280 9.82998 10.81508 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.036384 B = 0.004419 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.380343 B = 6334.343797 C = 6875.584893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.377 4.377 3 H 0.078 0.922 4 C -0.092 4.092 5 C 0.052 3.948 6 N -0.510 5.510 7 C 0.042 3.958 8 C 0.452 3.548 9 O -0.552 6.552 10 N -0.593 5.593 11 C -0.303 4.303 12 H 0.121 0.879 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.878 3.122 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.269 1.269 19 C 0.084 3.916 20 C -0.447 4.447 21 S 1.248 4.752 22 O -0.866 6.866 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.369 0.631 33 H 0.273 0.727 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 6.721 -13.533 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.495 4.495 3 H 0.097 0.903 4 C -0.131 4.131 5 C -0.076 4.076 6 N -0.235 5.235 7 C -0.089 4.089 8 C 0.237 3.763 9 O -0.433 6.433 10 N -0.233 5.233 11 C -0.431 4.431 12 H 0.138 0.862 13 C -0.161 4.161 14 N -0.522 5.522 15 Si 0.705 3.295 16 H -0.198 1.198 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.045 4.045 20 C -0.585 4.585 21 S 1.447 4.553 22 O -0.861 6.861 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.202 0.798 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.515 5.876 -14.073 15.260 hybrid contribution 2.969 2.650 0.258 3.988 sum 3.484 8.526 -13.816 16.604 Atomic orbital electron populations 1.21494 0.91700 1.03112 1.02382 1.26097 1.02979 1.07521 1.12953 0.90344 1.19895 0.95015 1.03289 0.94876 1.22051 0.95554 0.89914 1.00053 1.61861 1.35687 1.23555 1.02427 1.21998 0.93547 0.99064 0.94330 1.19570 0.88395 0.84097 0.84201 1.90562 1.13540 1.59165 1.80040 1.42225 1.08143 1.55277 1.17700 1.19416 0.95711 1.35344 0.92667 0.86180 1.25026 0.98316 0.97248 0.95557 1.69614 1.35917 1.39585 1.07116 0.86699 0.85619 0.78841 0.78359 1.19803 1.20250 1.19466 1.21579 0.94843 0.97865 0.90216 1.27614 1.20888 1.04894 1.05079 1.71405 0.84030 1.15939 0.83960 1.92992 1.72103 1.79245 1.41757 0.91164 0.91534 0.92618 0.91694 0.87917 0.94307 0.90195 0.88762 0.93304 0.79808 0.91654 0.94644 0.89908 0.87141 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.13 37.16 0.34 -1.11 16 2 C -0.38 -4.45 2.87 -30.11 -0.09 -4.54 16 3 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 4 C -0.09 -1.21 3.96 -30.10 -0.12 -1.33 16 5 C 0.05 0.70 4.52 -4.55 -0.02 0.68 16 6 N -0.51 -6.66 3.79 -236.84 -0.90 -7.56 16 7 C 0.04 0.60 5.18 -4.98 -0.03 0.57 16 8 C 0.45 9.15 7.02 -10.99 -0.08 9.07 16 9 O -0.55 -12.97 14.16 5.55 0.08 -12.90 16 10 N -0.59 -13.09 5.09 -10.96 -0.06 -13.15 16 11 C -0.30 -8.11 10.16 -14.93 -0.15 -8.26 16 12 H 0.12 3.68 7.39 -52.49 -0.39 3.30 16 13 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 14 N -0.88 -25.05 13.96 55.50 0.77 -24.28 16 15 Si 0.88 18.64 27.74 -169.99 -4.71 13.92 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 19 C 0.08 0.84 5.24 -3.52 -0.02 0.82 16 20 C -0.45 -4.50 5.58 37.48 0.21 -4.29 16 21 S 1.25 14.48 12.66 -107.50 -1.36 13.12 16 22 O -0.87 -14.53 18.12 -35.23 -0.64 -15.17 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.10 1.50 7.40 -51.93 -0.38 1.11 16 28 H 0.04 0.45 6.06 -51.93 -0.31 0.14 16 29 H 0.08 1.25 6.73 -51.93 -0.35 0.90 16 30 H 0.09 1.14 8.08 -51.92 -0.42 0.72 16 31 H 0.05 0.62 8.12 -51.93 -0.42 0.19 16 32 H 0.37 7.17 5.76 -40.82 -0.24 6.93 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.04 0.33 7.94 -51.93 -0.41 -0.08 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.02 8.14 -51.74 -0.42 0.60 16 37 H 0.09 0.87 7.03 -51.74 -0.36 0.51 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -33.54 305.13 -7.67 -41.21 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.41 Total: 7.58 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.05 Total: -7.38 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.18 Total: -44.99 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.56 Total: -28.06 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.92 kcal Atomic # 16 Polarization: 14.48 SS G_CDS: -1.36 Total: 13.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.54 -7.67 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116782247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.372 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds