Wall clock time and date at job start Mon Mar 30 2020 01:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.58124 * 2 1 4 4 C 1.45859 * 109.52888 * 120.16848 * 2 1 3 5 5 C 1.53020 * 115.26728 * 184.11819 * 4 2 1 6 6 N 1.45542 * 106.89127 * 267.49443 * 5 4 2 7 7 C 1.46894 * 110.99837 * 227.35503 * 6 5 4 8 8 C 1.50697 * 109.47127 * 66.27159 * 7 6 5 9 9 O 1.21290 * 120.00052 * 5.80827 * 8 7 6 10 10 N 1.34781 * 120.00014 * 185.81052 * 8 7 6 11 11 C 1.37100 * 119.99611 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00520 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99650 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99854 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99998 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47744 * 89.99378 * 15 13 11 17 17 H 1.48507 * 109.47255 * 209.99722 * 15 13 11 18 18 H 1.48503 * 109.47114 * 329.99127 * 15 13 11 19 19 C 1.46864 * 110.43405 * 103.80816 * 6 5 4 20 20 C 1.53615 * 116.10911 * 318.07614 * 19 6 5 21 21 S 1.80175 * 113.03591 * 315.59552 * 20 19 6 22 22 O 1.42108 * 109.47031 * 201.15770 * 21 20 19 23 23 H 1.08997 * 109.46907 * 180.16893 * 1 2 3 24 24 H 1.09005 * 109.47330 * 300.16639 * 1 2 3 25 25 H 1.09000 * 109.47716 * 60.16364 * 1 2 3 26 26 H 1.09002 * 108.32299 * 305.61540 * 4 2 1 27 27 H 1.09000 * 108.32058 * 62.61437 * 4 2 1 28 28 H 1.09001 * 109.96782 * 26.84179 * 5 4 2 29 29 H 1.08994 * 109.97098 * 148.06153 * 5 4 2 30 30 H 1.09008 * 109.47242 * 186.27141 * 7 6 5 31 31 H 1.09000 * 109.47406 * 306.27197 * 7 6 5 32 32 H 0.96997 * 119.99809 * 359.97438 * 10 8 7 33 33 H 0.96997 * 119.99958 * 180.02562 * 14 13 11 34 34 H 1.09004 * 108.15486 * 79.80270 * 19 6 5 35 35 H 1.08991 * 108.15542 * 196.56101 * 19 6 5 36 36 H 1.08995 * 108.77026 * 194.67845 * 20 19 6 37 37 H 1.09007 * 108.76908 * 76.51214 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0175 -0.6908 1.1885 5 6 3.5367 -0.6824 1.3717 6 7 4.0447 -1.8951 0.7475 7 6 4.9912 -2.5862 1.6331 8 6 4.2615 -3.0937 2.8501 9 8 3.0549 -2.9924 2.9198 10 7 4.9498 -3.6601 3.8611 11 6 4.2860 -4.1213 4.9684 12 1 3.2116 -4.0312 5.0305 13 6 4.9955 -4.7057 6.0105 14 7 4.3592 -5.1482 7.0717 15 14 6.8538 -4.8622 5.9028 16 1 7.4871 -3.6500 6.4814 17 1 7.2944 -6.0607 6.6611 18 1 7.2573 -5.0006 4.4804 19 6 4.6657 -1.5842 -0.5465 20 6 3.9196 -0.5717 -1.4286 21 16 2.1441 -0.8702 -1.4973 22 8 1.6047 -0.2534 -2.6583 23 1 -0.3633 -1.0276 0.0030 24 1 -0.3634 0.5164 0.8885 25 1 -0.3634 0.5113 -0.8914 26 1 1.5642 -0.2271 2.0646 27 1 1.6835 -1.7274 1.1435 28 1 3.9654 0.1941 0.8858 29 1 3.7836 -0.6772 2.4333 30 1 5.4393 -3.4259 1.1017 31 1 5.7732 -1.8924 1.9415 32 1 5.9148 -3.7413 3.8051 33 1 4.8545 -5.5558 7.7992 34 1 5.6673 -1.1976 -0.3584 35 1 4.7628 -2.5130 -1.1085 36 1 4.3233 -0.6231 -2.4397 37 1 4.0919 0.4301 -1.0351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116782247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:17 Heat of formation + Delta-G solvation = -82.795383 kcal Electronic energy + Delta-G solvation = -19810.045938 eV Core-core repulsion = 16713.478317 eV Total energy + Delta-G solvation = -3096.567621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56193 -38.78184 -36.76413 -36.02708 -35.73359 -33.61747 -32.13593 -30.40208 -28.06359 -25.71620 -24.84676 -23.10474 -21.45716 -20.99078 -20.09528 -18.29341 -17.76686 -17.32453 -16.91976 -16.66171 -16.07349 -15.87568 -15.61693 -15.33581 -14.86847 -14.64570 -14.37179 -14.14655 -14.04780 -13.70817 -13.54144 -13.21783 -12.92893 -12.83911 -12.63095 -12.31794 -12.27252 -11.91005 -11.84674 -11.77113 -11.64542 -11.36395 -10.79780 -10.18226 -10.10800 -9.29738 -8.90767 -8.31364 -5.90134 0.54000 1.36279 1.41513 1.50030 1.65332 2.13493 2.30712 2.67635 2.84114 3.26665 3.36637 3.71295 3.84639 3.98539 4.03962 4.19877 4.31565 4.43172 4.50816 4.59922 4.64005 4.73299 4.77104 4.85677 4.89415 5.04119 5.14514 5.17823 5.21266 5.62254 5.64648 6.00064 6.13706 6.27755 6.71890 7.02396 7.54966 8.13353 8.86452 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.036384 B = 0.004419 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.380343 B = 6334.343797 C = 6875.584893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.373 4.373 3 H 0.081 0.919 4 C -0.084 4.084 5 C 0.053 3.947 6 N -0.525 5.525 7 C 0.053 3.947 8 C 0.454 3.546 9 O -0.591 6.591 10 N -0.600 5.600 11 C -0.317 4.317 12 H 0.059 0.941 13 C -0.018 4.018 14 N -0.941 5.941 15 Si 0.960 3.040 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.227 1.227 19 C 0.083 3.917 20 C -0.438 4.438 21 S 1.268 4.732 22 O -0.919 6.919 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.387 0.613 33 H 0.275 0.725 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 7.107 -15.652 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.491 4.491 3 H 0.100 0.900 4 C -0.123 4.123 5 C -0.075 4.075 6 N -0.250 5.250 7 C -0.078 4.078 8 C 0.241 3.759 9 O -0.473 6.473 10 N -0.243 5.243 11 C -0.446 4.446 12 H 0.077 0.923 13 C -0.216 4.216 14 N -0.582 5.582 15 Si 0.781 3.219 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.150 1.150 19 C -0.045 4.045 20 C -0.577 4.577 21 S 1.469 4.531 22 O -0.914 6.914 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.984 6.280 -16.243 17.865 hybrid contribution 1.765 2.585 0.911 3.260 sum 5.749 8.864 -15.332 18.620 Atomic orbital electron populations 1.21542 0.91581 1.03676 1.02318 1.26003 1.03273 1.07494 1.12341 0.90038 1.19784 0.95405 1.02199 0.94895 1.21989 0.95444 0.91270 0.98804 1.61792 1.36406 1.23407 1.03432 1.21924 0.93201 1.00931 0.91739 1.20859 0.88286 0.81648 0.85089 1.90558 1.15924 1.59790 1.81026 1.42073 1.08914 1.56295 1.16998 1.18991 0.93600 1.36788 0.95242 0.92324 1.26043 1.04988 0.96184 0.94398 1.69808 1.38792 1.41199 1.08428 0.85423 0.77021 0.78711 0.80714 1.18730 1.20713 1.14998 1.21689 0.95232 0.99178 0.88439 1.27492 1.18591 1.05338 1.06310 1.70872 0.85012 1.15012 0.82207 1.92915 1.74309 1.80278 1.43941 0.90428 0.91124 0.93108 0.93179 0.89590 0.92062 0.92885 0.85243 0.90335 0.77743 0.91513 0.92368 0.87472 0.85451 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.13 71.98 0.66 -2.34 16 2 C -0.37 -8.52 2.87 28.40 0.08 -8.44 16 3 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 4 C -0.08 -2.18 3.96 28.41 0.11 -2.07 16 5 C 0.05 1.33 4.52 86.57 0.39 1.72 16 6 N -0.53 -11.96 3.79 -903.22 -3.42 -15.38 16 7 C 0.05 1.29 5.18 85.56 0.44 1.73 16 8 C 0.45 17.84 7.02 87.66 0.62 18.45 16 9 O -0.59 -28.38 14.16 -3.06 -0.04 -28.42 16 10 N -0.60 -25.81 5.09 -306.98 -1.56 -27.37 16 11 C -0.32 -17.53 10.16 84.04 0.85 -16.68 16 12 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 13 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 14 N -0.94 -55.58 13.96 21.66 0.30 -55.28 16 15 Si 0.96 37.30 27.74 68.60 1.90 39.20 16 16 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 17 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 19 C 0.08 1.24 5.24 86.52 0.45 1.69 16 20 C -0.44 -7.13 5.58 72.19 0.40 -6.73 16 21 S 1.27 27.44 12.66 -56.49 -0.71 26.73 16 22 O -0.92 -30.12 18.12 -148.98 -2.70 -32.82 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 27 H 0.09 2.55 7.40 -2.39 -0.02 2.53 16 28 H 0.06 1.24 6.06 -2.39 -0.01 1.22 16 29 H 0.05 1.61 6.73 -2.39 -0.02 1.60 16 30 H 0.13 2.36 8.08 -2.38 -0.02 2.34 16 31 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 32 H 0.39 13.71 5.76 -92.71 -0.53 13.17 16 33 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.06 0.70 7.94 -2.38 -0.02 0.68 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.13 1.78 8.14 -2.51 -0.02 1.76 16 37 H 0.09 1.46 7.03 -2.50 -0.02 1.44 16 Total: -1.00 -78.27 305.13 -1.29 -79.56 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.48 Total: 26.97 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.48 Total: -13.18 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -4.68 Total: -98.03 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -2.74 Total: -61.24 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 1.90 Total: 39.20 kcal Atomic # 16 Polarization: 27.44 SS G_CDS: -0.71 Total: 26.73 kcal Total: -78.27 -1.29 -79.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116782247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.237 kcal (2) G-P(sol) polarization free energy of solvation -78.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds