Wall clock time and date at job start Mon Mar 30 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.85484 * 2 1 4 4 C 1.55289 * 110.93594 * 123.71069 * 2 1 3 5 5 H 1.08999 * 113.95546 * 314.66339 * 4 2 1 6 6 C 1.54988 * 102.27571 * 77.19877 * 4 2 1 7 7 C 1.54064 * 104.76399 * 24.30227 * 6 4 2 8 8 N 1.48228 * 106.69799 * 1.01904 * 7 6 4 9 9 C 1.47673 * 108.91869 * 88.16183 * 8 7 6 10 10 C 1.52991 * 109.28639 * 312.91703 * 9 8 7 11 11 H 1.08998 * 109.26400 * 64.90755 * 10 9 8 12 12 N 1.46502 * 109.36495 * 184.59273 * 10 9 8 13 13 S 1.65602 * 120.00003 * 265.62699 * 12 10 9 14 14 O 1.42099 * 106.40422 * 311.46756 * 13 12 10 15 15 O 1.42096 * 106.40177 * 178.54206 * 13 12 10 16 16 C 1.76198 * 107.21304 * 65.00661 * 13 12 10 17 17 H 1.08004 * 120.00524 * 0.27531 * 16 13 12 18 18 C 1.37885 * 119.99742 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99913 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48493 * 109.47326 * 90.00142 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99892 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99603 * 20 18 16 24 24 C 1.53151 * 110.08914 * 304.78304 * 10 9 8 25 25 H 1.09002 * 109.47176 * 296.28614 * 1 2 3 26 26 H 1.08997 * 109.47091 * 56.28798 * 1 2 3 27 27 H 1.09004 * 109.46954 * 176.29120 * 1 2 3 28 28 H 1.08999 * 110.38524 * 143.12247 * 6 4 2 29 29 H 1.08999 * 110.38070 * 265.48390 * 6 4 2 30 30 H 1.09007 * 110.01269 * 120.32898 * 7 6 4 31 31 H 1.09001 * 110.01678 * 241.65876 * 7 6 4 32 32 H 1.09000 * 109.50601 * 192.96746 * 9 8 7 33 33 H 1.09008 * 109.50034 * 72.86184 * 9 8 7 34 34 H 0.96999 * 120.00057 * 85.63872 * 12 10 9 35 35 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 36 36 H 1.09005 * 109.63060 * 173.70194 * 24 10 9 37 37 H 1.08998 * 109.63579 * 294.29156 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0848 -0.8050 1.2065 5 1 1.5890 -0.5839 2.1517 6 6 1.8892 -2.2708 0.7426 7 6 1.8642 -2.1957 -0.7960 8 7 2.0616 -0.7715 -1.1561 9 6 3.5094 -0.5004 -1.2612 10 6 4.2234 -1.0888 -0.0427 11 1 4.1266 -2.1744 -0.0587 12 7 5.6423 -0.7268 -0.0893 13 16 6.7407 -1.7680 -0.7615 14 8 6.4850 -3.0442 -0.1913 15 8 8.0041 -1.1219 -0.6861 16 6 6.3518 -1.9015 -2.4748 17 1 5.5219 -1.3454 -2.8852 18 6 7.1109 -2.7113 -3.2930 19 7 6.8203 -2.8114 -4.5717 20 14 8.5510 -3.6672 -2.5847 21 1 8.0819 -4.9974 -2.1205 22 1 9.5891 -3.8459 -3.6315 23 1 9.1270 -2.9179 -1.4393 24 6 3.6019 -0.5423 1.2459 25 1 -0.3634 0.4551 0.9214 26 1 -0.3633 0.5704 -0.8548 27 1 -0.3633 -1.0256 -0.0665 28 1 2.7210 -2.8897 1.0789 29 1 0.9452 -2.6652 1.1187 30 1 2.6697 -2.8009 -1.2121 31 1 0.9027 -2.5463 -1.1711 32 1 3.6766 0.5762 -1.2962 33 1 3.9007 -0.9595 -2.1691 34 1 5.9383 0.1226 0.2737 35 1 7.3541 -3.3813 -5.1472 36 1 4.0389 -1.0486 2.1067 37 1 3.7862 0.5297 1.3155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:07 Heat of formation + Delta-G solvation = -72.416175 kcal Electronic energy + Delta-G solvation = -20829.831927 eV Core-core repulsion = 17733.714381 eV Total energy + Delta-G solvation = -3096.117545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91609 -35.68171 -34.92200 -34.44496 -33.04823 -31.92903 -30.79095 -29.67959 -26.50155 -25.65274 -24.27696 -21.24192 -20.41749 -19.48675 -18.96946 -17.62829 -16.78581 -16.27528 -15.87080 -15.09962 -14.42027 -14.15323 -14.10037 -13.67577 -13.31637 -13.28412 -12.85300 -12.80983 -12.34344 -12.21370 -12.12355 -11.66559 -11.43843 -11.33520 -11.11300 -10.87879 -10.73675 -10.64605 -10.55242 -10.49905 -10.30782 -10.15799 -9.79779 -9.48905 -9.21215 -8.81965 -8.07924 -6.80247 -5.34792 2.06202 3.06789 3.17065 3.26494 3.94340 4.04345 4.31748 4.57246 4.59497 4.78229 4.91857 5.13574 5.20665 5.29389 5.33277 5.38867 5.41628 5.50394 5.61346 5.70325 5.80949 5.85129 5.92566 6.01538 6.05784 6.09370 6.13251 6.20809 6.29672 6.33868 6.51505 6.61480 7.03927 7.15496 7.47458 7.72367 8.22147 8.70648 10.31378 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.006601 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.492151 B = 4240.615490 C = 4592.394064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 H 0.085 0.915 4 C -0.119 4.119 5 H 0.092 0.908 6 C -0.151 4.151 7 C 0.020 3.980 8 N -0.486 5.486 9 C 0.010 3.990 10 C 0.125 3.875 11 H 0.097 0.903 12 N -1.118 6.118 13 S 2.672 3.328 14 O -1.013 7.013 15 O -1.010 7.010 16 C -1.016 5.016 17 H 0.127 0.873 18 C 0.155 3.845 19 N -0.821 5.821 20 Si 0.800 3.200 21 H -0.247 1.247 22 H -0.255 1.255 23 H -0.221 1.221 24 C -0.121 4.121 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.404 0.596 35 H 0.280 0.720 36 H 0.070 0.930 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 4.338 9.348 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 H 0.103 0.897 4 C -0.139 4.139 5 H 0.110 0.890 6 C -0.190 4.190 7 C -0.108 4.108 8 N -0.207 5.207 9 C -0.120 4.120 10 C 0.016 3.984 11 H 0.115 0.885 12 N -0.872 5.872 13 S 2.774 3.226 14 O -1.003 7.003 15 O -1.000 7.000 16 C -1.151 5.151 17 H 0.144 0.856 18 C -0.065 4.065 19 N -0.449 5.449 20 Si 0.620 3.380 21 H -0.171 1.171 22 H -0.179 1.179 23 H -0.144 1.144 24 C -0.160 4.160 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.601 3.810 8.998 14.418 hybrid contribution 0.899 -0.171 0.424 1.009 sum -9.703 3.639 9.422 14.006 Atomic orbital electron populations 1.21630 0.93997 1.02199 1.01324 1.23155 0.95752 0.97761 0.88917 0.89669 1.23129 0.95668 0.95727 0.99382 0.88992 1.23033 1.02303 0.96633 0.97037 1.23164 1.02890 0.90979 0.93787 1.66423 1.12760 1.04584 1.36927 1.23345 0.87190 1.02030 0.99397 1.21462 0.80826 1.01001 0.95099 0.88493 1.55540 1.18183 1.35107 1.78419 1.01420 0.71787 0.72405 0.76992 1.93400 1.85276 1.41116 1.80497 1.93473 1.41007 1.76247 1.89286 1.30541 1.28038 1.40031 1.16444 0.85571 1.24407 0.95271 0.92588 0.94245 1.69990 1.37304 1.33381 1.04266 0.87884 0.83449 0.83801 0.82824 1.17069 1.17916 1.14353 1.22145 0.94614 1.01397 0.97875 0.92607 0.92162 0.92397 0.90623 0.91436 0.90000 0.90311 0.90468 0.87953 0.76429 0.90914 0.91122 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.45 37.15 0.35 -0.96 16 2 C 0.05 0.62 3.02 -65.44 -0.20 0.43 16 3 H 0.09 0.98 7.70 -51.93 -0.40 0.58 16 4 C -0.12 -1.34 3.82 -87.83 -0.34 -1.68 16 5 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.15 -1.83 5.40 -25.13 -0.14 -1.97 16 7 C 0.02 0.28 5.55 -2.54 -0.01 0.27 16 8 N -0.49 -7.06 5.82 -221.19 -1.29 -8.35 16 9 C 0.01 0.17 5.44 -3.40 -0.02 0.15 16 10 C 0.13 2.09 2.40 -67.86 -0.16 1.93 16 11 H 0.10 1.78 4.71 -51.93 -0.24 1.54 16 12 N -1.12 -20.93 5.46 -4.83 -0.03 -20.96 16 13 S 2.67 65.93 4.22 -107.50 -0.45 65.48 16 14 O -1.01 -26.77 16.17 -57.17 -0.92 -27.70 16 15 O -1.01 -27.09 16.02 -57.17 -0.92 -28.01 16 16 C -1.02 -27.68 10.10 30.60 0.31 -27.37 16 17 H 0.13 3.41 5.95 -52.48 -0.31 3.10 16 18 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 19 N -0.82 -23.42 13.96 55.43 0.77 -22.65 16 20 Si 0.80 20.55 26.54 -169.99 -4.51 16.04 16 21 H -0.25 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.22 -5.82 5.61 56.52 0.32 -5.51 16 24 C -0.12 -1.58 5.04 -26.13 -0.13 -1.71 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.57 6.95 -51.93 -0.36 0.21 16 28 H 0.08 1.00 6.94 -51.93 -0.36 0.64 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.30 6.93 -51.92 -0.36 0.94 16 31 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 32 H 0.08 1.18 7.87 -51.93 -0.41 0.77 16 33 H 0.10 1.99 5.83 -51.92 -0.30 1.68 16 34 H 0.40 6.43 8.83 -34.47 -0.30 6.13 16 35 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -31.77 290.36 -8.62 -40.39 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.21 Total: 7.99 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -0.43 Total: -26.62 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.54 Total: -51.95 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -1.84 Total: -55.70 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.51 Total: 16.04 kcal Atomic # 16 Polarization: 65.93 SS G_CDS: -0.45 Total: 65.48 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.77 -8.62 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.027 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds