Wall clock time and date at job start Mon Mar 30 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.85484 * 2 1 4 4 C 1.55289 * 110.93594 * 123.71069 * 2 1 3 5 5 H 1.08999 * 113.95546 * 314.66339 * 4 2 1 6 6 C 1.54988 * 102.27571 * 77.19877 * 4 2 1 7 7 C 1.54064 * 104.76399 * 24.30227 * 6 4 2 8 8 N 1.48228 * 106.69799 * 1.01904 * 7 6 4 9 9 C 1.47673 * 108.91869 * 88.16183 * 8 7 6 10 10 C 1.52991 * 109.28639 * 312.91703 * 9 8 7 11 11 H 1.08998 * 109.26400 * 64.90755 * 10 9 8 12 12 N 1.46502 * 109.36495 * 184.59273 * 10 9 8 13 13 S 1.65602 * 120.00003 * 265.62699 * 12 10 9 14 14 O 1.42099 * 106.40422 * 311.46756 * 13 12 10 15 15 O 1.42096 * 106.40177 * 178.54206 * 13 12 10 16 16 C 1.76198 * 107.21304 * 65.00661 * 13 12 10 17 17 H 1.08004 * 120.00524 * 0.27531 * 16 13 12 18 18 C 1.37885 * 119.99742 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99913 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48493 * 109.47326 * 90.00142 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99892 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99603 * 20 18 16 24 24 C 1.53151 * 110.08914 * 304.78304 * 10 9 8 25 25 H 1.09002 * 109.47176 * 296.28614 * 1 2 3 26 26 H 1.08997 * 109.47091 * 56.28798 * 1 2 3 27 27 H 1.09004 * 109.46954 * 176.29120 * 1 2 3 28 28 H 1.08999 * 110.38524 * 143.12247 * 6 4 2 29 29 H 1.08999 * 110.38070 * 265.48390 * 6 4 2 30 30 H 1.09007 * 110.01269 * 120.32898 * 7 6 4 31 31 H 1.09001 * 110.01678 * 241.65876 * 7 6 4 32 32 H 1.09000 * 109.50601 * 192.96746 * 9 8 7 33 33 H 1.09008 * 109.50034 * 72.86184 * 9 8 7 34 34 H 0.96999 * 120.00057 * 85.63872 * 12 10 9 35 35 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 36 36 H 1.09005 * 109.63060 * 173.70194 * 24 10 9 37 37 H 1.08998 * 109.63579 * 294.29156 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0848 -0.8050 1.2065 5 1 1.5890 -0.5839 2.1517 6 6 1.8892 -2.2708 0.7426 7 6 1.8642 -2.1957 -0.7960 8 7 2.0616 -0.7715 -1.1561 9 6 3.5094 -0.5004 -1.2612 10 6 4.2234 -1.0888 -0.0427 11 1 4.1266 -2.1744 -0.0587 12 7 5.6423 -0.7268 -0.0893 13 16 6.7407 -1.7680 -0.7615 14 8 6.4850 -3.0442 -0.1913 15 8 8.0041 -1.1219 -0.6861 16 6 6.3518 -1.9015 -2.4748 17 1 5.5219 -1.3454 -2.8852 18 6 7.1109 -2.7113 -3.2930 19 7 6.8203 -2.8114 -4.5717 20 14 8.5510 -3.6672 -2.5847 21 1 8.0819 -4.9974 -2.1205 22 1 9.5891 -3.8459 -3.6315 23 1 9.1270 -2.9179 -1.4393 24 6 3.6019 -0.5423 1.2459 25 1 -0.3634 0.4551 0.9214 26 1 -0.3633 0.5704 -0.8548 27 1 -0.3633 -1.0256 -0.0665 28 1 2.7210 -2.8897 1.0789 29 1 0.9452 -2.6652 1.1187 30 1 2.6697 -2.8009 -1.2121 31 1 0.9027 -2.5463 -1.1711 32 1 3.6766 0.5762 -1.2962 33 1 3.9007 -0.9595 -2.1691 34 1 5.9383 0.1226 0.2737 35 1 7.3541 -3.3813 -5.1472 36 1 4.0389 -1.0486 2.1067 37 1 3.7862 0.5297 1.3155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:06 Heat of formation + Delta-G solvation = -99.435943 kcal Electronic energy + Delta-G solvation = -20831.003592 eV Core-core repulsion = 17733.714381 eV Total energy + Delta-G solvation = -3097.289210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00917 -37.73018 -36.53281 -36.34171 -35.19725 -33.00804 -31.76109 -30.92391 -28.59739 -26.78934 -25.40584 -22.41159 -21.53633 -21.08736 -20.35090 -19.54594 -18.69478 -17.66164 -17.31469 -16.87741 -16.05189 -15.69454 -15.25827 -15.14423 -14.99457 -14.76291 -14.52830 -13.95828 -13.60472 -13.45540 -13.39309 -13.20762 -12.99078 -12.81255 -12.74410 -12.61543 -12.46916 -12.05647 -11.97181 -11.83176 -11.49481 -11.36166 -11.34168 -11.29783 -11.14687 -10.62353 -9.29052 -8.95958 -7.51666 0.12106 1.02793 1.11779 1.19094 1.87241 2.40883 2.50065 3.07627 3.27272 3.54177 3.72682 3.89964 3.95998 4.06670 4.16114 4.20988 4.41841 4.43093 4.45172 4.62015 4.66733 4.70429 4.81216 4.93566 5.04100 5.08380 5.11524 5.20023 5.23033 5.29822 5.31995 5.40666 5.48943 5.93140 6.01590 6.08491 6.29977 6.54806 8.20874 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.006601 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.492151 B = 4240.615490 C = 4592.394064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.051 3.949 3 H 0.093 0.907 4 C -0.107 4.107 5 H 0.126 0.874 6 C -0.149 4.149 7 C 0.016 3.984 8 N -0.497 5.497 9 C 0.015 3.985 10 C 0.120 3.880 11 H 0.075 0.925 12 N -1.103 6.103 13 S 2.693 3.307 14 O -1.032 7.032 15 O -1.031 7.031 16 C -1.035 5.035 17 H 0.116 0.884 18 C 0.111 3.889 19 N -0.851 5.851 20 Si 0.821 3.179 21 H -0.241 1.241 22 H -0.220 1.220 23 H -0.232 1.232 24 C -0.118 4.118 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.420 0.580 35 H 0.290 0.710 36 H 0.075 0.925 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 5.226 11.345 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 H 0.111 0.889 4 C -0.127 4.127 5 H 0.144 0.856 6 C -0.188 4.188 7 C -0.112 4.112 8 N -0.219 5.219 9 C -0.115 4.115 10 C 0.011 3.989 11 H 0.093 0.907 12 N -0.862 5.862 13 S 2.793 3.207 14 O -1.022 7.022 15 O -1.021 7.021 16 C -1.168 5.168 17 H 0.133 0.867 18 C -0.106 4.106 19 N -0.481 5.481 20 Si 0.639 3.361 21 H -0.164 1.164 22 H -0.142 1.142 23 H -0.154 1.154 24 C -0.157 4.157 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.847 4.700 10.969 16.815 hybrid contribution 1.177 -0.402 -0.209 1.261 sum -10.670 4.297 10.760 15.751 Atomic orbital electron populations 1.21614 0.92168 1.02369 1.02497 1.23320 0.97120 0.97658 0.87677 0.88919 1.23172 0.94296 0.94591 1.00625 0.85582 1.23018 1.03044 0.97455 0.95286 1.23184 1.02194 0.90380 0.95487 1.66439 1.11049 1.05286 1.39116 1.23143 0.88708 1.02109 0.97537 1.21674 0.79446 1.00148 0.97585 0.90707 1.55042 1.18564 1.35113 1.77509 1.00595 0.71820 0.72504 0.75769 1.93370 1.85735 1.42817 1.80261 1.93434 1.42793 1.76638 1.89271 1.31040 1.27609 1.39584 1.18524 0.86657 1.25107 0.97196 0.93504 0.94754 1.70015 1.38571 1.34455 1.05035 0.87549 0.82456 0.82988 0.83146 1.16427 1.14207 1.15415 1.22167 0.95711 1.02507 0.95295 0.90078 0.92595 0.92519 0.92174 0.88894 0.93388 0.89002 0.89318 0.92060 0.74439 0.89910 0.90645 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.45 71.98 0.68 -1.39 16 2 C 0.05 1.03 3.02 45.33 0.14 1.17 16 3 H 0.09 1.79 7.70 -2.39 -0.02 1.78 16 4 C -0.11 -2.03 3.82 -8.99 -0.03 -2.06 16 5 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 6 C -0.15 -3.32 5.40 31.63 0.17 -3.15 16 7 C 0.02 0.44 5.55 86.41 0.48 0.92 16 8 N -0.50 -14.12 5.82 -853.72 -4.96 -19.08 16 9 C 0.02 0.51 5.44 86.15 0.47 0.98 16 10 C 0.12 3.95 2.40 45.04 0.11 4.06 16 11 H 0.07 2.82 4.71 -2.39 -0.01 2.81 16 12 N -1.10 -40.81 5.46 -169.19 -0.92 -41.74 16 13 S 2.69 134.11 4.22 -56.49 -0.24 133.88 16 14 O -1.03 -55.10 16.17 -128.00 -2.07 -57.17 16 15 O -1.03 -55.30 16.02 -128.00 -2.05 -57.35 16 16 C -1.03 -58.07 10.10 67.74 0.68 -57.38 16 17 H 0.12 6.56 5.95 -2.91 -0.02 6.54 16 18 C 0.11 6.43 5.47 84.66 0.46 6.89 16 19 N -0.85 -49.48 13.96 21.45 0.30 -49.18 16 20 Si 0.82 41.54 26.54 68.60 1.82 43.36 16 21 H -0.24 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.22 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.23 -12.07 5.61 99.48 0.56 -11.52 16 24 C -0.12 -2.74 5.04 30.99 0.16 -2.58 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.93 6.95 -2.38 -0.02 0.92 16 28 H 0.06 1.54 6.94 -2.39 -0.02 1.52 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.63 6.93 -2.38 -0.02 1.61 16 31 H 0.09 2.24 7.88 -2.39 -0.02 2.23 16 32 H 0.09 2.67 7.87 -2.39 -0.02 2.65 16 33 H 0.06 2.53 5.83 -2.38 -0.01 2.52 16 34 H 0.42 12.79 8.83 -96.75 -0.85 11.93 16 35 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.09 1.73 8.07 -2.39 -0.02 1.72 16 Total: -1.00 -69.37 290.36 -4.73 -74.10 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.08 Total: 25.72 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 3.31 Total: -52.54 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -5.59 Total: -110.00 kcal Atomic # 8 Polarization: -110.40 SS G_CDS: -4.12 Total: -114.52 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.82 Total: 43.36 kcal Atomic # 16 Polarization: 134.11 SS G_CDS: -0.24 Total: 133.88 kcal Total: -69.37 -4.73 -74.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.335 kcal (2) G-P(sol) polarization free energy of solvation -69.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds