Wall clock time and date at job start Mon Mar 30 2020 01:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.85662 * 2 1 4 4 C 1.55281 * 110.93795 * 123.72098 * 2 1 3 5 5 H 1.09001 * 113.22778 * 315.04635 * 4 2 1 6 6 C 1.54994 * 102.27747 * 77.19668 * 4 2 1 7 7 C 1.54055 * 104.76423 * 24.30511 * 6 4 2 8 8 N 1.48236 * 106.69734 * 1.01468 * 7 6 4 9 9 C 1.47674 * 108.91496 * 88.16911 * 8 7 6 10 10 C 1.52988 * 109.28208 * 312.91537 * 9 8 7 11 11 H 1.09002 * 109.36827 * 184.72179 * 10 9 8 12 12 N 1.46502 * 109.36715 * 64.97852 * 10 9 8 13 13 S 1.65600 * 120.00033 * 123.18275 * 12 10 9 14 14 O 1.42101 * 106.40454 * 311.45904 * 13 12 10 15 15 O 1.42105 * 106.40230 * 178.53733 * 13 12 10 16 16 C 1.76206 * 107.21930 * 64.99936 * 13 12 10 17 17 H 1.07995 * 119.99787 * 0.02562 * 16 13 12 18 18 C 1.37874 * 119.99929 * 180.02562 * 16 13 12 19 19 N 1.31507 * 120.00111 * 180.02562 * 18 16 13 20 20 Si 1.86806 * 120.00081 * 359.72056 * 18 16 13 21 21 H 1.48496 * 109.47103 * 270.27653 * 20 18 16 22 22 H 1.48500 * 109.46776 * 30.27728 * 20 18 16 23 23 H 1.48497 * 109.47167 * 150.27613 * 20 18 16 24 24 C 1.53147 * 109.99107 * 304.84897 * 10 9 8 25 25 H 1.08996 * 109.46815 * 182.25493 * 1 2 3 26 26 H 1.09008 * 109.46651 * 302.24810 * 1 2 3 27 27 H 1.08997 * 109.47190 * 62.24895 * 1 2 3 28 28 H 1.09003 * 110.37758 * 265.48676 * 6 4 2 29 29 H 1.09001 * 110.47940 * 143.18076 * 6 4 2 30 30 H 1.09002 * 110.01762 * 241.70455 * 7 6 4 31 31 H 1.08997 * 110.05204 * 120.34467 * 7 6 4 32 32 H 1.08999 * 109.50415 * 192.97490 * 9 8 7 33 33 H 1.08998 * 109.53580 * 72.87646 * 9 8 7 34 34 H 0.97001 * 119.99701 * 303.17964 * 12 10 9 35 35 H 0.97000 * 120.00777 * 179.72590 * 19 18 16 36 36 H 1.09006 * 109.63515 * 173.64320 * 24 10 9 37 37 H 1.09003 * 109.62956 * 294.23015 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0849 -0.8051 1.2063 5 1 1.5764 -0.5800 2.1438 6 6 1.8892 -2.2710 0.7422 7 6 1.8642 -2.1957 -0.7963 8 7 2.0616 -0.7713 -1.1563 9 6 3.5094 -0.5002 -1.2614 10 6 4.2234 -1.0888 -0.0431 11 1 5.2786 -0.8177 -0.0765 12 7 4.0959 -2.5482 -0.0634 13 16 5.4522 -3.4981 -0.0425 14 8 6.3225 -2.9771 -1.0376 15 8 4.9987 -4.8449 -0.0344 16 6 6.2510 -3.2329 1.5055 17 1 5.8251 -2.5465 2.2223 18 6 7.4199 -3.9015 1.8016 19 7 8.0158 -3.7039 2.9571 20 14 8.1525 -5.0946 0.5648 21 1 7.6007 -6.4529 0.8007 22 1 7.8102 -4.6532 -0.8112 23 1 9.6288 -5.1258 0.7218 24 6 3.5991 -0.5424 1.2442 25 1 -0.3633 -1.0268 0.0404 26 1 -0.3633 0.5484 0.8692 27 1 -0.3633 0.4785 -0.9094 28 1 0.9452 -2.6653 1.1183 29 1 2.7198 -2.8915 1.0785 30 1 0.9024 -2.5454 -1.1714 31 1 2.6693 -2.8007 -1.2132 32 1 3.6765 0.5763 -1.2961 33 1 3.9011 -0.9587 -2.1694 34 1 3.2171 -2.9579 -0.0891 35 1 8.8360 -4.1773 3.1671 36 1 4.0343 -1.0486 2.1059 37 1 3.7835 0.5297 1.3141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:13 Heat of formation + Delta-G solvation = 9.231952 kcal Electronic energy + Delta-G solvation = -21238.458169 eV Core-core repulsion = 18145.881152 eV Total energy + Delta-G solvation = -3092.577017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74194 -35.63508 -34.59592 -34.38986 -33.04158 -32.01036 -31.74087 -29.78102 -26.40192 -25.40658 -24.24235 -21.37577 -20.57500 -20.08727 -19.27452 -17.79727 -16.86767 -15.86844 -15.22707 -14.73115 -14.64159 -14.10802 -14.00458 -13.94110 -13.47012 -13.28350 -12.83523 -12.67420 -12.56004 -12.16003 -12.04155 -11.47639 -11.40891 -11.23773 -11.17620 -11.07442 -10.79378 -10.61844 -10.56800 -10.49347 -10.34869 -10.16755 -9.75243 -9.21688 -9.08282 -8.69200 -8.08273 -6.81026 -5.34424 2.12724 3.06878 3.17381 3.27020 3.95304 4.01465 4.32385 4.59038 4.61339 4.72323 4.94795 5.10099 5.22317 5.25415 5.32878 5.36171 5.40577 5.53794 5.61954 5.67224 5.73310 5.82218 5.95169 5.99023 6.04264 6.05557 6.15878 6.22914 6.24430 6.29347 6.43678 6.59611 6.89847 7.04378 7.46990 7.66557 8.19817 8.70704 10.31123 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.006781 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.665002 B = 4128.379865 C = 4321.471743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.053 3.947 3 H 0.086 0.914 4 C -0.113 4.113 5 H 0.091 0.909 6 C -0.184 4.184 7 C -0.002 4.002 8 N -0.487 5.487 9 C 0.025 3.975 10 C 0.131 3.869 11 H 0.100 0.900 12 N -1.140 6.140 13 S 2.658 3.342 14 O -1.012 7.012 15 O -1.016 7.016 16 C -1.014 5.014 17 H 0.121 0.879 18 C 0.153 3.847 19 N -0.824 5.824 20 Si 0.801 3.199 21 H -0.247 1.247 22 H -0.220 1.220 23 H -0.256 1.256 24 C -0.131 4.131 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.430 0.570 35 H 0.280 0.720 36 H 0.081 0.919 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 7.421 -3.625 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.056 4.056 3 H 0.105 0.895 4 C -0.132 4.132 5 H 0.109 0.891 6 C -0.224 4.224 7 C -0.132 4.132 8 N -0.208 5.208 9 C -0.105 4.105 10 C 0.022 3.978 11 H 0.118 0.882 12 N -0.918 5.918 13 S 2.760 3.240 14 O -1.002 7.002 15 O -1.006 7.006 16 C -1.148 5.148 17 H 0.139 0.861 18 C -0.066 4.066 19 N -0.453 5.453 20 Si 0.621 3.379 21 H -0.171 1.171 22 H -0.142 1.142 23 H -0.180 1.180 24 C -0.170 4.170 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.288 0.712 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.795 7.023 -4.796 14.541 hybrid contribution 0.740 -0.649 1.234 1.578 sum -11.054 6.374 -3.563 13.248 Atomic orbital electron populations 1.21643 0.94089 1.02044 1.01468 1.23170 0.95678 0.97680 0.89061 0.89550 1.22969 0.96496 0.94701 0.99077 0.89100 1.23723 1.03587 0.98744 0.96325 1.23711 1.02985 0.92142 0.94352 1.66360 1.12856 1.04223 1.37377 1.22944 0.87968 1.01200 0.98423 1.21140 1.01600 0.80356 0.94714 0.88175 1.57875 1.26230 1.15559 1.92141 1.01785 0.72853 0.72530 0.76873 1.93456 1.64912 1.80143 1.61696 1.93417 1.81632 1.35939 1.89632 1.30491 1.20996 1.39104 1.24243 0.86117 1.24431 0.94199 0.93280 0.94718 1.69984 1.17038 1.37515 1.20796 0.87868 0.81808 0.83703 0.84519 1.17119 1.14164 1.17965 1.22204 0.94678 1.01121 0.99014 0.92508 0.92491 0.92204 0.91454 0.87026 0.90367 0.87948 0.89869 0.89479 0.71230 0.90965 0.90036 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.44 37.16 0.35 -0.96 16 2 C 0.05 0.60 3.02 -65.45 -0.20 0.40 16 3 H 0.09 0.91 7.69 -51.93 -0.40 0.52 16 4 C -0.11 -1.39 3.82 -87.98 -0.34 -1.72 16 5 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 6 C -0.18 -2.47 5.09 -25.13 -0.13 -2.60 16 7 C 0.00 -0.03 5.35 -2.54 -0.01 -0.04 16 8 N -0.49 -6.39 5.82 -237.64 -1.38 -7.78 16 9 C 0.02 0.35 5.74 -3.40 -0.02 0.33 16 10 C 0.13 2.12 3.10 -67.86 -0.21 1.91 16 11 H 0.10 1.75 7.60 -51.93 -0.39 1.36 16 12 N -1.14 -21.30 3.11 -4.83 -0.02 -21.31 16 13 S 2.66 65.42 4.12 -107.50 -0.44 64.97 16 14 O -1.01 -26.84 15.56 -57.17 -0.89 -27.73 16 15 O -1.02 -27.03 16.82 -57.17 -0.96 -27.99 16 16 C -1.01 -27.80 10.26 30.60 0.31 -27.49 16 17 H 0.12 3.30 7.82 -52.49 -0.41 2.89 16 18 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 19 N -0.82 -23.69 13.96 55.43 0.77 -22.91 16 20 Si 0.80 20.70 26.53 -169.99 -4.51 16.20 16 21 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.22 -5.79 5.62 56.52 0.32 -5.47 16 23 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.13 -1.85 5.36 -26.27 -0.14 -1.99 16 25 H 0.06 0.57 6.98 -51.93 -0.36 0.20 16 26 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.11 1.76 5.15 -51.93 -0.27 1.49 16 30 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 31 H 0.10 1.55 5.18 -51.93 -0.27 1.28 16 32 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.43 7.23 2.06 -73.14 -0.15 7.08 16 35 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.30 7.91 -51.93 -0.41 0.89 16 37 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -32.05 285.65 -8.84 -40.89 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.24 Total: 9.23 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -0.48 Total: -27.87 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.62 Total: -52.00 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -1.85 Total: -55.72 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.20 kcal Atomic # 16 Polarization: 65.42 SS G_CDS: -0.44 Total: 64.97 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.05 -8.84 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.122 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds