Wall clock time and date at job start Mon Mar 30 2020 01:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.85662 * 2 1 4 4 C 1.55281 * 110.93795 * 123.72098 * 2 1 3 5 5 H 1.09001 * 113.22778 * 315.04635 * 4 2 1 6 6 C 1.54994 * 102.27747 * 77.19668 * 4 2 1 7 7 C 1.54055 * 104.76423 * 24.30511 * 6 4 2 8 8 N 1.48236 * 106.69734 * 1.01468 * 7 6 4 9 9 C 1.47674 * 108.91496 * 88.16911 * 8 7 6 10 10 C 1.52988 * 109.28208 * 312.91537 * 9 8 7 11 11 H 1.09002 * 109.36827 * 184.72179 * 10 9 8 12 12 N 1.46502 * 109.36715 * 64.97852 * 10 9 8 13 13 S 1.65600 * 120.00033 * 123.18275 * 12 10 9 14 14 O 1.42101 * 106.40454 * 311.45904 * 13 12 10 15 15 O 1.42105 * 106.40230 * 178.53733 * 13 12 10 16 16 C 1.76206 * 107.21930 * 64.99936 * 13 12 10 17 17 H 1.07995 * 119.99787 * 0.02562 * 16 13 12 18 18 C 1.37874 * 119.99929 * 180.02562 * 16 13 12 19 19 N 1.31507 * 120.00111 * 180.02562 * 18 16 13 20 20 Si 1.86806 * 120.00081 * 359.72056 * 18 16 13 21 21 H 1.48496 * 109.47103 * 270.27653 * 20 18 16 22 22 H 1.48500 * 109.46776 * 30.27728 * 20 18 16 23 23 H 1.48497 * 109.47167 * 150.27613 * 20 18 16 24 24 C 1.53147 * 109.99107 * 304.84897 * 10 9 8 25 25 H 1.08996 * 109.46815 * 182.25493 * 1 2 3 26 26 H 1.09008 * 109.46651 * 302.24810 * 1 2 3 27 27 H 1.08997 * 109.47190 * 62.24895 * 1 2 3 28 28 H 1.09003 * 110.37758 * 265.48676 * 6 4 2 29 29 H 1.09001 * 110.47940 * 143.18076 * 6 4 2 30 30 H 1.09002 * 110.01762 * 241.70455 * 7 6 4 31 31 H 1.08997 * 110.05204 * 120.34467 * 7 6 4 32 32 H 1.08999 * 109.50415 * 192.97490 * 9 8 7 33 33 H 1.08998 * 109.53580 * 72.87646 * 9 8 7 34 34 H 0.97001 * 119.99701 * 303.17964 * 12 10 9 35 35 H 0.97000 * 120.00777 * 179.72590 * 19 18 16 36 36 H 1.09006 * 109.63515 * 173.64320 * 24 10 9 37 37 H 1.09003 * 109.62956 * 294.23015 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0849 -0.8051 1.2063 5 1 1.5764 -0.5800 2.1438 6 6 1.8892 -2.2710 0.7422 7 6 1.8642 -2.1957 -0.7963 8 7 2.0616 -0.7713 -1.1563 9 6 3.5094 -0.5002 -1.2614 10 6 4.2234 -1.0888 -0.0431 11 1 5.2786 -0.8177 -0.0765 12 7 4.0959 -2.5482 -0.0634 13 16 5.4522 -3.4981 -0.0425 14 8 6.3225 -2.9771 -1.0376 15 8 4.9987 -4.8449 -0.0344 16 6 6.2510 -3.2329 1.5055 17 1 5.8251 -2.5465 2.2223 18 6 7.4199 -3.9015 1.8016 19 7 8.0158 -3.7039 2.9571 20 14 8.1525 -5.0946 0.5648 21 1 7.6007 -6.4529 0.8007 22 1 7.8102 -4.6532 -0.8112 23 1 9.6288 -5.1258 0.7218 24 6 3.5991 -0.5424 1.2442 25 1 -0.3633 -1.0268 0.0404 26 1 -0.3633 0.5484 0.8692 27 1 -0.3633 0.4785 -0.9094 28 1 0.9452 -2.6653 1.1183 29 1 2.7198 -2.8915 1.0785 30 1 0.9024 -2.5454 -1.1714 31 1 2.6693 -2.8007 -1.2132 32 1 3.6765 0.5763 -1.2961 33 1 3.9011 -0.9587 -2.1694 34 1 3.2171 -2.9579 -0.0891 35 1 8.8360 -4.1773 3.1671 36 1 4.0343 -1.0486 2.1059 37 1 3.7835 0.5297 1.3141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:13 Heat of formation + Delta-G solvation = -16.986646 kcal Electronic energy + Delta-G solvation = -21239.595093 eV Core-core repulsion = 18145.881152 eV Total energy + Delta-G solvation = -3093.713941 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.86381 -37.68964 -36.47300 -35.85534 -35.19899 -33.08720 -32.89748 -30.82183 -28.55480 -26.48727 -25.33034 -22.55342 -21.66017 -21.41563 -20.79605 -19.70422 -18.80400 -17.45871 -16.91072 -16.16226 -15.89977 -15.73300 -15.41413 -15.18665 -15.06557 -14.93301 -14.43237 -13.87456 -13.76234 -13.49100 -13.23020 -13.20847 -12.95518 -12.69895 -12.68833 -12.60040 -12.37581 -12.23349 -12.07299 -11.78919 -11.54600 -11.40993 -11.36149 -11.31573 -10.99606 -10.11097 -9.27606 -8.98143 -7.52367 0.20092 1.01788 1.10712 1.18735 1.86714 2.40605 2.60002 3.00134 3.30641 3.56614 3.69017 3.90116 3.93877 4.03374 4.20153 4.25137 4.34090 4.42469 4.48630 4.60686 4.66608 4.71904 4.81247 4.85608 5.00401 5.04672 5.09233 5.17547 5.20953 5.26938 5.30899 5.39724 5.47288 5.87175 5.99760 6.02325 6.21801 6.53339 8.19140 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.006781 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.665002 B = 4128.379865 C = 4321.471743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 H 0.101 0.899 4 C -0.107 4.107 5 H 0.111 0.889 6 C -0.189 4.189 7 C -0.005 4.005 8 N -0.486 5.486 9 C 0.029 3.971 10 C 0.119 3.881 11 H 0.081 0.919 12 N -1.122 6.122 13 S 2.675 3.325 14 O -1.033 7.033 15 O -1.038 7.038 16 C -1.032 5.032 17 H 0.109 0.891 18 C 0.109 3.891 19 N -0.853 5.853 20 Si 0.821 3.179 21 H -0.242 1.242 22 H -0.231 1.231 23 H -0.219 1.219 24 C -0.130 4.130 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.440 0.560 35 H 0.290 0.710 36 H 0.055 0.945 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 8.579 -4.047 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.053 4.053 3 H 0.119 0.881 4 C -0.127 4.127 5 H 0.129 0.871 6 C -0.229 4.229 7 C -0.135 4.135 8 N -0.207 5.207 9 C -0.101 4.101 10 C 0.011 3.989 11 H 0.099 0.901 12 N -0.906 5.906 13 S 2.775 3.225 14 O -1.023 7.023 15 O -1.028 7.028 16 C -1.164 5.164 17 H 0.127 0.873 18 C -0.107 4.107 19 N -0.483 5.483 20 Si 0.639 3.361 21 H -0.166 1.166 22 H -0.153 1.153 23 H -0.142 1.142 24 C -0.169 4.169 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.302 0.698 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.455 8.175 -5.195 16.578 hybrid contribution 1.166 -0.934 1.385 2.037 sum -12.289 7.240 -3.809 14.763 Atomic orbital electron populations 1.21628 0.92437 1.02258 1.02505 1.23294 0.96895 0.97804 0.87289 0.88070 1.23003 0.95050 0.94023 1.00597 0.87138 1.23686 1.03500 0.99310 0.96363 1.23701 1.03152 0.92318 0.94347 1.66408 1.11874 1.04070 1.38388 1.22930 0.88352 1.02470 0.96385 1.21463 1.01328 0.78724 0.97371 0.90130 1.57672 1.24504 1.16551 1.91864 1.01115 0.73482 0.72431 0.75482 1.93418 1.66703 1.80520 1.61661 1.93369 1.82115 1.37796 1.89553 1.30977 1.21246 1.38560 1.25630 0.87297 1.25129 0.94910 0.94625 0.96073 1.70004 1.17960 1.38608 1.21730 0.87540 0.83735 0.82469 0.82368 1.16557 1.15348 1.14152 1.22192 0.96004 1.02205 0.96527 0.92788 0.90719 0.91884 0.89278 0.89891 0.88386 0.90050 0.87155 0.90727 0.69757 0.89934 0.92606 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.44 71.98 0.68 -1.32 16 2 C 0.06 1.06 3.02 45.33 0.14 1.19 16 3 H 0.10 1.69 7.69 -2.38 -0.02 1.67 16 4 C -0.11 -2.35 3.82 -9.08 -0.03 -2.39 16 5 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 6 C -0.19 -4.73 5.09 31.63 0.16 -4.57 16 7 C -0.01 -0.13 5.35 86.40 0.46 0.33 16 8 N -0.49 -11.51 5.82 -905.75 -5.27 -16.77 16 9 C 0.03 0.77 5.74 86.15 0.49 1.26 16 10 C 0.12 3.82 3.10 45.04 0.14 3.96 16 11 H 0.08 2.88 7.60 -2.39 -0.02 2.86 16 12 N -1.12 -42.29 3.11 -169.19 -0.53 -42.82 16 13 S 2.67 134.12 4.12 -56.49 -0.23 133.89 16 14 O -1.03 -55.65 15.56 -128.00 -1.99 -57.64 16 15 O -1.04 -56.00 16.82 -128.00 -2.15 -58.15 16 16 C -1.03 -58.05 10.26 67.73 0.69 -57.36 16 17 H 0.11 6.20 7.82 -2.91 -0.02 6.17 16 18 C 0.11 6.33 5.47 84.66 0.46 6.80 16 19 N -0.85 -49.56 13.96 21.45 0.30 -49.26 16 20 Si 0.82 41.84 26.53 68.60 1.82 43.66 16 21 H -0.24 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.23 -12.15 5.62 99.48 0.56 -11.60 16 23 H -0.22 -9.83 7.11 99.48 0.71 -9.13 16 24 C -0.13 -3.51 5.36 30.89 0.17 -3.35 16 25 H 0.05 0.87 6.98 -2.39 -0.02 0.85 16 26 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 29 H 0.08 2.59 5.15 -2.40 -0.01 2.58 16 30 H 0.10 2.10 8.00 -2.39 -0.02 2.08 16 31 H 0.08 2.42 5.18 -2.39 -0.01 2.40 16 32 H 0.11 2.30 7.87 -2.39 -0.02 2.28 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.44 14.80 2.06 -133.06 -0.27 14.52 16 35 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.06 1.79 7.91 -2.38 -0.02 1.77 16 37 H 0.10 2.11 8.06 -2.39 -0.02 2.09 16 Total: -1.00 -68.99 285.65 -4.04 -73.03 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.66 Total: 29.50 kcal Atomic # 6 Polarization: -58.80 SS G_CDS: 3.36 Total: -55.44 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -5.49 Total: -108.85 kcal Atomic # 8 Polarization: -111.65 SS G_CDS: -4.14 Total: -115.79 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.82 Total: 43.66 kcal Atomic # 16 Polarization: 134.12 SS G_CDS: -0.23 Total: 133.89 kcal Total: -68.99 -4.04 -73.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.043 kcal (2) G-P(sol) polarization free energy of solvation -68.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds