Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 108.57659 * 2 1 4 4 C 1.54037 * 108.71483 * 118.12918 * 2 1 3 5 5 N 1.44683 * 109.41865 * 201.97653 * 4 2 1 6 6 C 1.34779 * 119.72576 * 81.52025 * 5 4 2 7 7 O 1.21586 * 120.00036 * 174.91761 * 6 5 4 8 8 N 1.34775 * 120.00075 * 354.90971 * 6 5 4 9 9 C 1.46492 * 120.00209 * 185.01885 * 8 6 5 10 10 C 1.50708 * 109.47172 * 179.97438 * 9 8 6 11 11 H 1.07992 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99717 * 179.97438 * 10 9 8 13 13 N 1.31524 * 119.99827 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00572 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47086 * 89.99485 * 14 12 10 16 16 H 1.48497 * 109.47500 * 209.99828 * 14 12 10 17 17 H 1.48508 * 109.46827 * 330.00072 * 14 12 10 18 18 C 1.46389 * 120.54949 * 261.49936 * 5 4 2 19 19 C 1.53831 * 114.95463 * 42.54055 * 18 5 4 20 20 S 1.79947 * 111.13376 * 43.04654 * 19 18 5 21 21 O 1.42101 * 109.47012 * 159.49289 * 20 19 18 22 22 C 1.45823 * 108.71949 * 241.88066 * 2 1 3 23 23 H 1.09001 * 109.46593 * 178.12354 * 1 2 3 24 24 H 1.09005 * 109.46841 * 298.12430 * 1 2 3 25 25 H 1.09000 * 109.47005 * 58.12058 * 1 2 3 26 26 H 1.08994 * 109.47622 * 82.00013 * 4 2 1 27 27 H 1.08994 * 109.50714 * 321.96934 * 4 2 1 28 28 H 0.97007 * 119.99858 * 5.01584 * 8 6 5 29 29 H 1.09000 * 109.47295 * 299.99701 * 9 8 6 30 30 H 1.08998 * 109.47781 * 60.00301 * 9 8 6 31 31 H 0.97000 * 119.99708 * 179.97438 * 13 12 10 32 32 H 1.09001 * 108.38577 * 281.12318 * 18 5 4 33 33 H 1.09002 * 108.38827 * 163.95900 * 18 5 4 34 34 H 1.09000 * 109.14491 * 282.61826 * 19 18 5 35 35 H 1.08992 * 109.10014 * 163.44032 * 19 18 5 36 36 H 1.08999 * 108.84402 * 53.07042 * 22 2 1 37 37 H 1.09001 * 108.84315 * 294.70931 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8773 1.0332 0.0000 4 6 2.0243 -0.6878 1.2866 5 7 3.3771 -0.2609 1.5711 6 6 3.5898 0.9172 2.1903 7 8 4.7166 1.2387 2.5147 8 7 2.5535 1.7389 2.4498 9 6 2.7960 3.0654 3.0223 10 6 1.4819 3.7780 3.2133 11 1 0.5585 3.2913 2.9363 12 6 1.4585 5.0508 3.7426 13 7 0.3117 5.6730 3.9088 14 14 3.0557 5.8925 4.2224 15 1 3.5827 6.6531 3.0609 16 1 2.8047 6.8238 5.3514 17 1 4.0494 4.8694 4.6361 18 6 4.5167 -1.0980 1.1924 19 6 4.4179 -1.7356 -0.2041 20 16 3.8069 -0.5535 -1.4154 21 8 4.1649 -0.9852 -2.7210 22 6 1.9980 -0.6509 -1.2181 23 1 -0.3632 -1.0272 -0.0337 24 1 -0.3633 0.4845 0.9064 25 1 -0.3633 0.5427 -0.8727 26 1 2.0054 -1.7691 1.1509 27 1 1.3746 -0.4146 2.1180 28 1 1.6471 1.4520 2.2573 29 1 3.2957 2.9597 3.9852 30 1 3.4272 3.6429 2.3469 31 1 0.2953 6.5683 4.2815 32 1 4.6169 -1.8958 1.9283 33 1 5.4189 -0.4874 1.2285 34 1 3.7386 -2.5870 -0.1611 35 1 5.4056 -2.0815 -0.5089 36 1 1.5240 -0.1745 -2.0762 37 1 1.7026 -1.6998 -1.1925 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246664701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -87.939520 kcal Electronic energy + Delta-G solvation = -20077.495818 eV Core-core repulsion = 16980.705130 eV Total energy + Delta-G solvation = -3096.790688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.36928 -38.29960 -36.83290 -36.31272 -35.33658 -34.32534 -32.11633 -29.49635 -28.32907 -27.34622 -24.86657 -23.29783 -21.90088 -20.83533 -19.39225 -18.51047 -18.25984 -17.81835 -16.84955 -16.60521 -16.47354 -15.97851 -15.56580 -15.19460 -15.03926 -14.64989 -14.51621 -14.32016 -14.00692 -13.86055 -13.61355 -13.22711 -12.91500 -12.89242 -12.63705 -12.57166 -12.13789 -12.08681 -11.83475 -11.64702 -11.50576 -11.12156 -10.96325 -10.80604 -9.98562 -9.43595 -9.09277 -8.29059 -6.34350 0.44831 1.42254 1.45164 1.57276 1.58237 1.83614 2.28596 2.38395 2.73655 3.07827 3.26199 3.63410 3.75821 3.91165 4.05317 4.19920 4.43177 4.45570 4.66647 4.68260 4.76144 4.85991 4.88583 4.93744 4.99989 5.20006 5.21825 5.31744 5.38684 5.44430 5.68904 5.70852 6.01051 6.30638 6.68193 7.21447 7.31661 7.75649 8.85401 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.024365 B = 0.005306 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.912508 B = 5275.871464 C = 5712.602982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.077 0.923 4 C 0.100 3.900 5 N -0.623 5.623 6 C 0.701 3.299 7 O -0.632 6.632 8 N -0.719 5.719 9 C 0.247 3.753 10 C -0.538 4.538 11 H 0.061 0.939 12 C 0.027 3.973 13 N -0.934 5.934 14 Si 0.932 3.068 15 H -0.265 1.265 16 H -0.281 1.281 17 H -0.257 1.257 18 C 0.158 3.842 19 C -0.445 4.445 20 S 1.242 4.758 21 O -0.920 6.920 22 C -0.411 4.411 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.405 0.595 29 H 0.010 0.990 30 H 0.017 0.983 31 H 0.270 0.730 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -15.115 -6.729 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.024 4.024 5 N -0.360 5.360 6 C 0.402 3.598 7 O -0.513 6.513 8 N -0.373 5.373 9 C 0.123 3.877 10 C -0.576 4.576 11 H 0.079 0.921 12 C -0.173 4.173 13 N -0.573 5.573 14 Si 0.757 3.243 15 H -0.190 1.190 16 H -0.206 1.206 17 H -0.181 1.181 18 C 0.033 3.967 19 C -0.584 4.584 20 S 1.445 4.555 21 O -0.916 6.916 22 C -0.549 4.549 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.106 0.894 28 H 0.242 0.758 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.243 -14.166 -7.108 16.407 hybrid contribution -0.870 -1.484 -0.312 1.749 sum 3.373 -15.650 -7.420 17.646 Atomic orbital electron populations 1.21892 0.92892 1.02811 1.02650 1.20014 0.97723 1.00766 0.92653 0.90427 1.21832 0.82060 1.01493 0.96977 1.46696 1.07764 1.19360 1.62155 1.16043 0.84373 0.80434 0.78922 1.90849 1.23594 1.76705 1.60180 1.45263 1.08625 1.16484 1.66961 1.18999 0.95706 0.79997 0.93031 1.21283 0.92779 1.00652 1.42847 0.92094 1.25529 0.99214 0.97711 0.94811 1.69988 1.27067 1.14411 1.45872 0.85930 0.80498 0.79140 0.78774 1.18987 1.20616 1.18072 1.20764 0.88861 0.94606 0.92438 1.27709 1.10633 1.12610 1.07467 1.70601 0.88597 1.11264 0.85050 1.92980 1.79354 1.83366 1.35858 1.26208 1.17751 1.06972 1.03990 0.91119 0.92066 0.92316 0.87106 0.89378 0.75830 0.97161 0.96545 0.92127 0.89743 0.89361 0.87101 0.85261 0.87037 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.94 71.98 0.64 -1.61 16 2 C -0.09 -1.54 1.96 -12.64 -0.02 -1.56 16 3 H 0.08 1.61 7.35 -2.39 -0.02 1.59 16 4 C 0.10 1.65 4.35 87.07 0.38 2.03 16 5 N -0.62 -13.96 2.40 -840.96 -2.02 -15.98 16 6 C 0.70 23.31 7.95 179.05 1.42 24.73 16 7 O -0.63 -25.95 15.72 -3.99 -0.06 -26.01 16 8 N -0.72 -25.90 5.04 -482.30 -2.43 -28.33 16 9 C 0.25 11.24 4.50 85.64 0.39 11.63 16 10 C -0.54 -27.86 9.83 25.60 0.25 -27.61 16 11 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 12 C 0.03 1.47 5.47 84.65 0.46 1.94 16 13 N -0.93 -54.00 13.96 21.45 0.30 -53.70 16 14 Si 0.93 42.30 27.47 68.60 1.88 44.19 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.26 -11.46 6.54 99.48 0.65 -10.81 16 18 C 0.16 2.88 5.97 86.68 0.52 3.39 16 19 C -0.44 -6.80 5.88 72.26 0.42 -6.38 16 20 S 1.24 25.25 13.05 -56.49 -0.74 24.52 16 21 O -0.92 -29.93 18.14 -148.98 -2.70 -32.64 16 22 C -0.41 -6.76 4.98 69.78 0.35 -6.41 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 1.06 8.03 -2.38 -0.02 1.05 16 25 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 26 H 0.11 1.20 7.52 -2.39 -0.02 1.18 16 27 H 0.09 1.50 6.65 -2.39 -0.02 1.48 16 28 H 0.40 12.68 5.85 -92.70 -0.54 12.14 16 29 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 30 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 31 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.89 7.01 -2.39 -0.02 1.88 16 34 H 0.11 1.32 7.91 -2.47 -0.02 1.30 16 35 H 0.13 1.86 8.14 -2.48 -0.02 1.84 16 36 H 0.11 1.90 8.04 -2.39 -0.02 1.88 16 37 H 0.10 1.37 8.11 -2.39 -0.02 1.35 16 Total: -1.00 -73.65 306.30 -0.49 -74.14 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.47 Total: 13.67 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 4.81 Total: 0.14 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -4.15 Total: -98.01 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -2.76 Total: -58.65 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 16 Polarization: 25.25 SS G_CDS: -0.74 Total: 24.52 kcal Total: -73.65 -0.49 -74.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246664701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.800 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds