Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 O 1.42898 * 109.47428 * 119.99922 * 2 1 3 5 5 C 1.35903 * 117.00473 * 155.06450 * 4 2 1 6 6 C 1.38820 * 120.00378 * 185.48382 * 5 4 2 7 7 C 1.38207 * 120.18830 * 179.97438 * 6 5 4 8 8 C 1.38072 * 120.17200 * 359.97438 * 7 6 5 9 9 C 1.39307 * 119.99676 * 0.02562 * 8 7 6 10 10 C 1.48467 * 120.09028 * 180.02562 * 9 8 7 11 11 N 1.31259 * 126.20005 * 180.02562 * 10 9 8 12 12 O 1.21265 * 110.53036 * 179.97438 * 11 10 9 13 13 C 1.34746 * 109.75825 * 359.97438 * 12 11 10 14 14 C 1.40377 * 126.68199 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99629 * 179.97438 * 14 13 12 16 16 C 1.40431 * 119.99864 * 359.97438 * 14 13 12 17 17 N 1.30515 * 120.00174 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99667 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47227 * 60.00120 * 18 16 14 20 20 H 1.48496 * 109.47307 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47169 * 300.00657 * 18 16 14 22 22 N 1.33188 * 106.63307 * 359.76334 * 13 12 11 23 23 C 1.38517 * 119.99239 * 5.46512 * 5 4 2 24 24 H 1.09003 * 109.47013 * 299.99974 * 1 2 3 25 25 H 1.09005 * 109.47131 * 59.99754 * 1 2 3 26 26 H 1.09000 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47333 * 240.00379 * 2 1 3 28 28 H 1.09006 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47376 * 300.00105 * 3 2 1 30 30 H 1.09003 * 109.47174 * 60.00125 * 3 2 1 31 31 H 1.08007 * 119.90252 * 359.97438 * 6 5 4 32 32 H 1.07992 * 119.91151 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.00155 * 180.27808 * 8 7 6 34 34 H 0.97000 * 119.99675 * 179.97438 * 17 16 14 35 35 H 1.07994 * 120.09004 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2473 -1.2236 1.0983 6 6 3.7264 -1.9891 2.1526 7 6 4.9875 -2.5506 2.0869 8 6 5.7776 -2.3536 0.9718 9 6 5.3042 -1.5867 -0.0905 10 6 6.1518 -1.3740 -1.2907 11 7 5.8282 -0.6765 -2.3546 12 8 6.7319 -0.6901 -3.1631 13 6 7.7593 -1.4196 -2.6857 14 6 8.9819 -1.6677 -3.3292 15 1 9.7348 -2.2711 -2.8440 16 6 9.2260 -1.1313 -4.6039 17 7 8.3163 -0.4017 -5.1900 18 14 10.8533 -1.4609 -5.4599 19 1 11.0269 -2.9238 -5.6470 20 1 10.8617 -0.7876 -6.7834 21 1 11.9654 -0.9328 -4.6293 22 7 7.3910 -1.8546 -1.4819 23 6 4.0338 -1.0205 -0.0236 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1118 -2.1463 3.0267 32 1 5.3556 -3.1457 2.9094 33 1 6.7609 -2.7974 0.9214 34 1 8.4851 -0.0309 -6.0703 35 1 3.6622 -0.4258 -0.8449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = 25.289863 kcal Electronic energy + Delta-G solvation = -20228.825730 eV Core-core repulsion = 17001.501085 eV Total energy + Delta-G solvation = -3227.324645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.08334 -40.02910 -37.49234 -34.18527 -33.92031 -33.01119 -31.33745 -29.74180 -29.20795 -27.30775 -26.54927 -23.72848 -22.93430 -21.57742 -20.68892 -20.37620 -18.51240 -17.22319 -15.89522 -15.84152 -15.50482 -15.42031 -15.34570 -14.92571 -14.31989 -13.73720 -13.52587 -13.17470 -13.02907 -12.72029 -12.37837 -12.20905 -11.88304 -11.77621 -11.67053 -11.48806 -11.26097 -11.08538 -10.81664 -10.61159 -10.53906 -10.16550 -10.09965 -9.84472 -9.03952 -8.80609 -8.17765 -7.72368 -7.13998 -5.09207 1.41008 1.74215 2.77575 2.93174 2.97178 3.25224 3.30326 3.69742 3.73334 4.40781 4.70628 4.78459 4.89618 4.98811 5.06350 5.16816 5.27228 5.33991 5.44213 5.48515 5.63988 5.67755 5.72733 5.79024 5.96362 5.96738 6.14268 6.19689 6.22041 6.55292 6.71946 6.79363 7.01689 7.05654 7.27946 7.62972 7.82170 8.01514 8.23266 8.38816 9.85019 10.24270 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.004162 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.755915 B = 6725.659887 C = 7596.977395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.180 4.180 4 O -0.313 6.313 5 C 0.123 3.877 6 C -0.156 4.156 7 C -0.088 4.088 8 C -0.123 4.123 9 C 0.056 3.944 10 C 0.187 3.813 11 N -0.455 5.455 12 O 0.054 5.946 13 C 0.304 3.696 14 C -0.414 4.414 15 H 0.114 0.886 16 C 0.071 3.929 17 N -0.764 5.764 18 Si 0.938 3.062 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.259 1.259 22 N -0.603 5.603 23 C -0.186 4.186 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.293 0.707 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 0.313 6.717 10.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 C -0.237 4.237 4 O -0.228 6.228 5 C 0.078 3.922 6 C -0.176 4.176 7 C -0.106 4.106 8 C -0.143 4.143 9 C 0.054 3.946 10 C -0.084 4.084 11 N -0.182 5.182 12 O 0.003 5.997 13 C 0.113 3.887 14 C -0.452 4.452 15 H 0.132 0.868 16 C -0.155 4.155 17 N -0.391 5.391 18 Si 0.760 3.240 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.183 1.183 22 N -0.346 5.346 23 C -0.207 4.207 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.114 0.638 6.921 11.462 hybrid contribution 0.923 0.047 -0.886 1.280 sum -8.191 0.686 6.036 10.197 Atomic orbital electron populations 1.21833 0.92653 1.02952 1.02826 1.22427 0.95100 0.92875 0.87800 1.22373 1.02736 0.95847 1.02763 1.86060 1.29436 1.68541 1.38766 1.18774 0.84629 0.94332 0.94465 1.20383 0.97253 1.01434 0.98510 1.20840 0.93053 0.98876 0.97798 1.21179 1.00973 0.99492 0.92660 1.17360 0.91136 0.95597 0.90507 1.23273 0.92324 0.98156 0.94629 1.74561 1.14451 1.26269 1.02934 1.85514 1.19743 1.57438 1.37009 1.24178 0.90995 0.86763 0.86731 1.18566 0.96710 1.29764 1.00161 0.86806 1.26201 0.99761 0.92576 0.96913 1.69622 1.33705 1.21255 1.14478 0.85863 0.79817 0.80075 0.78222 1.18301 1.19817 1.18307 1.72358 1.10846 1.34432 1.17005 1.21312 0.95086 1.05296 0.98972 0.91657 0.90596 0.91774 0.90618 0.91501 0.91025 0.91686 0.85581 0.85265 0.84691 0.89527 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.56 37.16 0.36 -1.08 16 2 C 0.07 0.96 2.85 -26.73 -0.08 0.89 16 3 C -0.18 -2.23 9.17 37.16 0.34 -1.89 16 4 O -0.31 -4.74 9.80 -19.44 -0.19 -4.93 16 5 C 0.12 2.05 6.60 -39.26 -0.26 1.79 16 6 C -0.16 -2.34 9.98 -39.38 -0.39 -2.73 16 7 C -0.09 -1.31 10.03 -39.65 -0.40 -1.71 16 8 C -0.12 -2.30 9.69 -39.24 -0.38 -2.68 16 9 C 0.06 1.21 5.87 -104.91 -0.62 0.59 16 10 C 0.19 4.86 7.78 -156.52 -1.22 3.64 16 11 N -0.46 -12.48 11.83 31.47 0.37 -12.11 16 12 O 0.05 1.55 9.72 15.16 0.15 1.70 16 13 C 0.30 8.61 7.80 -16.32 -0.13 8.48 16 14 C -0.41 -10.80 9.48 -37.95 -0.36 -11.16 16 15 H 0.11 2.78 7.85 -52.49 -0.41 2.36 16 16 C 0.07 1.68 5.50 -17.29 -0.10 1.59 16 17 N -0.76 -19.14 12.05 55.57 0.67 -18.47 16 18 Si 0.94 17.27 29.56 -169.99 -5.03 12.24 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 22 N -0.60 -16.60 11.29 -11.62 -0.13 -16.74 16 23 C -0.19 -3.56 7.88 -39.10 -0.31 -3.87 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.06 6.31 -51.93 -0.33 0.74 16 28 H 0.07 0.97 6.91 -51.93 -0.36 0.61 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.14 2.56 7.86 -52.48 -0.41 2.15 16 34 H 0.29 6.51 8.29 -40.82 -0.34 6.17 16 35 H 0.14 2.62 5.22 -52.49 -0.27 2.34 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -30.08 307.03 -6.94 -37.02 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.88 Total: 4.81 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -3.53 Total: -8.15 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.91 Total: -47.32 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: -0.04 Total: -3.24 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.08 -6.94 -37.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.310 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds