Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 O 1.42898 * 109.47428 * 119.99922 * 2 1 3 5 5 C 1.35903 * 117.00473 * 155.06450 * 4 2 1 6 6 C 1.38820 * 120.00378 * 185.48382 * 5 4 2 7 7 C 1.38207 * 120.18830 * 179.97438 * 6 5 4 8 8 C 1.38072 * 120.17200 * 359.97438 * 7 6 5 9 9 C 1.39307 * 119.99676 * 0.02562 * 8 7 6 10 10 C 1.48467 * 120.09028 * 180.02562 * 9 8 7 11 11 N 1.31259 * 126.20005 * 180.02562 * 10 9 8 12 12 O 1.21265 * 110.53036 * 179.97438 * 11 10 9 13 13 C 1.34746 * 109.75825 * 359.97438 * 12 11 10 14 14 C 1.40377 * 126.68199 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99629 * 179.97438 * 14 13 12 16 16 C 1.40431 * 119.99864 * 359.97438 * 14 13 12 17 17 N 1.30515 * 120.00174 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99667 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47227 * 60.00120 * 18 16 14 20 20 H 1.48496 * 109.47307 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47169 * 300.00657 * 18 16 14 22 22 N 1.33188 * 106.63307 * 359.76334 * 13 12 11 23 23 C 1.38517 * 119.99239 * 5.46512 * 5 4 2 24 24 H 1.09003 * 109.47013 * 299.99974 * 1 2 3 25 25 H 1.09005 * 109.47131 * 59.99754 * 1 2 3 26 26 H 1.09000 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47333 * 240.00379 * 2 1 3 28 28 H 1.09006 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47376 * 300.00105 * 3 2 1 30 30 H 1.09003 * 109.47174 * 60.00125 * 3 2 1 31 31 H 1.08007 * 119.90252 * 359.97438 * 6 5 4 32 32 H 1.07992 * 119.91151 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.00155 * 180.27808 * 8 7 6 34 34 H 0.97000 * 119.99675 * 179.97438 * 17 16 14 35 35 H 1.07994 * 120.09004 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2473 -1.2236 1.0983 6 6 3.7264 -1.9891 2.1526 7 6 4.9875 -2.5506 2.0869 8 6 5.7776 -2.3536 0.9718 9 6 5.3042 -1.5867 -0.0905 10 6 6.1518 -1.3740 -1.2907 11 7 5.8282 -0.6765 -2.3546 12 8 6.7319 -0.6901 -3.1631 13 6 7.7593 -1.4196 -2.6857 14 6 8.9819 -1.6677 -3.3292 15 1 9.7348 -2.2711 -2.8440 16 6 9.2260 -1.1313 -4.6039 17 7 8.3163 -0.4017 -5.1900 18 14 10.8533 -1.4609 -5.4599 19 1 11.0269 -2.9238 -5.6470 20 1 10.8617 -0.7876 -6.7834 21 1 11.9654 -0.9328 -4.6293 22 7 7.3910 -1.8546 -1.4819 23 6 4.0338 -1.0205 -0.0236 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1118 -2.1463 3.0267 32 1 5.3556 -3.1457 2.9094 33 1 6.7609 -2.7974 0.9214 34 1 8.4851 -0.0309 -6.0703 35 1 3.6622 -0.4258 -0.8449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247386280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = 5.751307 kcal Electronic energy + Delta-G solvation = -20229.672985 eV Core-core repulsion = 17001.501085 eV Total energy + Delta-G solvation = -3228.171900 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.10047 -41.29038 -38.79786 -36.13185 -35.74348 -34.19328 -33.05846 -31.35877 -30.65349 -28.56677 -28.20426 -25.29241 -24.40672 -23.34317 -22.39233 -21.61309 -20.17700 -18.74500 -17.96928 -17.41405 -17.09652 -16.88718 -16.67826 -16.40389 -15.68773 -15.14024 -15.02175 -14.51656 -14.34865 -13.79777 -13.71590 -13.48289 -13.35107 -13.23652 -13.09815 -12.97488 -12.61613 -12.38956 -12.18955 -12.15642 -12.02110 -11.78790 -11.68001 -11.47993 -11.11130 -10.62083 -9.74597 -9.17559 -8.99072 -7.15401 -0.08651 0.38693 1.00723 1.39979 1.58824 1.60070 2.01045 2.13973 2.16057 2.82007 3.01194 3.03267 3.28713 3.75333 3.80097 3.89588 3.94142 4.10584 4.20281 4.28794 4.45279 4.56344 4.64413 4.73030 4.77897 4.83429 4.90135 4.92446 5.10054 5.16750 5.21644 5.32279 5.43972 5.59502 5.73659 5.82269 5.99630 6.21696 6.37016 6.39553 8.02254 8.18769 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.004162 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.755915 B = 6725.659887 C = 7596.977395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 C -0.177 4.177 4 O -0.311 6.311 5 C 0.122 3.878 6 C -0.138 4.138 7 C -0.069 4.069 8 C -0.131 4.131 9 C 0.010 3.990 10 C 0.194 3.806 11 N -0.483 5.483 12 O 0.019 5.981 13 C 0.270 3.730 14 C -0.430 4.430 15 H 0.125 0.875 16 C 0.028 3.972 17 N -0.795 5.795 18 Si 1.024 2.976 19 H -0.249 1.249 20 H -0.259 1.259 21 H -0.250 1.250 22 N -0.626 5.626 23 C -0.192 4.192 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.307 0.693 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -0.311 8.006 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 C -0.234 4.234 4 O -0.225 6.225 5 C 0.077 3.923 6 C -0.157 4.157 7 C -0.086 4.086 8 C -0.151 4.151 9 C 0.008 3.992 10 C -0.077 4.077 11 N -0.216 5.216 12 O -0.025 6.025 13 C 0.082 3.918 14 C -0.467 4.467 15 H 0.143 0.857 16 C -0.194 4.194 17 N -0.422 5.422 18 Si 0.840 3.160 19 H -0.173 1.173 20 H -0.183 1.183 21 H -0.173 1.173 22 N -0.371 5.371 23 C -0.213 4.213 24 H 0.095 0.905 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.184 0.816 32 H 0.193 0.807 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.309 0.028 8.189 12.398 hybrid contribution 0.884 0.253 -1.210 1.520 sum -8.425 0.281 6.978 10.943 Atomic orbital electron populations 1.21840 0.89760 1.03644 1.04315 1.22671 0.97229 0.92607 0.86486 1.22352 1.00801 0.95978 1.04257 1.86072 1.28383 1.68447 1.39632 1.18958 0.84924 0.94396 0.94019 1.20901 0.97229 0.98936 0.98634 1.21268 0.92265 0.97883 0.97215 1.21252 1.01261 0.99315 0.93294 1.17551 0.92098 0.99143 0.90380 1.24054 0.92168 0.96144 0.95356 1.74481 1.14775 1.28534 1.03834 1.85441 1.20347 1.58760 1.37982 1.24827 0.91923 0.87519 0.87552 1.19167 0.96202 1.29925 1.01449 0.85701 1.27427 1.04072 0.91322 0.96546 1.69688 1.36089 1.21063 1.15341 0.84631 0.73786 0.80414 0.77174 1.17299 1.18263 1.17336 1.72324 1.11901 1.35684 1.17191 1.21226 0.94740 1.05442 0.99906 0.90462 0.88802 0.91493 0.92481 0.94448 0.89525 0.90196 0.81622 0.80678 0.85707 0.88131 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.56 71.98 0.69 -1.77 16 2 C 0.07 1.68 2.85 30.59 0.09 1.76 16 3 C -0.18 -4.34 9.17 71.98 0.66 -3.68 16 4 O -0.31 -8.92 9.80 -92.46 -0.91 -9.82 16 5 C 0.12 3.94 6.60 22.48 0.15 4.09 16 6 C -0.14 -3.66 9.98 22.40 0.22 -3.43 16 7 C -0.07 -1.86 10.03 22.22 0.22 -1.63 16 8 C -0.13 -4.90 9.69 22.49 0.22 -4.68 16 9 C 0.01 0.46 5.87 -20.05 -0.12 0.34 16 10 C 0.19 10.75 7.78 137.46 1.07 11.82 16 11 N -0.48 -28.44 11.83 -56.08 -0.66 -29.11 16 12 O 0.02 1.19 9.72 64.31 0.62 1.81 16 13 C 0.27 16.16 7.80 85.07 0.66 16.82 16 14 C -0.43 -23.14 9.48 23.33 0.22 -22.91 16 15 H 0.13 6.21 7.85 -2.91 -0.02 6.19 16 16 C 0.03 1.36 5.50 85.42 0.47 1.83 16 17 N -0.79 -40.72 12.05 21.91 0.26 -40.46 16 18 Si 1.02 34.40 29.56 68.60 2.03 36.43 16 19 H -0.25 -7.99 7.11 99.48 0.71 -7.29 16 20 H -0.26 -8.04 7.11 99.48 0.71 -7.33 16 21 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 22 N -0.63 -36.49 11.29 -305.09 -3.44 -39.94 16 23 C -0.19 -7.63 7.88 22.58 0.18 -7.45 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.67 6.31 -2.39 -0.02 1.65 16 28 H 0.04 1.13 6.91 -2.38 -0.02 1.11 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 33 H 0.12 4.84 7.86 -2.91 -0.02 4.82 16 34 H 0.31 13.70 8.29 -92.71 -0.77 12.93 16 35 H 0.12 5.05 5.22 -2.91 -0.02 5.03 16 Total: -1.00 -70.54 307.03 3.75 -66.79 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.12 Total: 23.19 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 4.73 Total: -8.90 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -3.84 Total: -109.50 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.28 Total: -8.01 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Total: -70.54 3.75 -66.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.544 kcal (2) G-P(sol) polarization free energy of solvation -70.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds