Wall clock time and date at job start Mon Mar 30 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46965 * 2 1 4 4 O 1.42901 * 109.47449 * 120.00113 * 2 1 3 5 5 C 1.35732 * 117.00076 * 155.17980 * 4 2 1 6 6 C 1.39074 * 119.88352 * 4.92956 * 5 4 2 7 7 C 1.37629 * 120.12063 * 179.72329 * 6 5 4 8 8 C 1.40070 * 119.87665 * 0.53114 * 7 6 5 9 9 C 1.47068 * 120.11612 * 179.72262 * 8 7 6 10 10 N 1.32360 * 126.16865 * 179.70976 * 9 8 7 11 11 N 1.28685 * 109.43915 * 179.85976 * 10 9 8 12 12 C 1.33161 * 109.17242 * 0.40746 * 11 10 9 13 13 C 1.39443 * 126.35931 * 179.72809 * 12 11 10 14 14 H 1.08001 * 120.00141 * 185.77968 * 13 12 11 15 15 C 1.40357 * 119.99946 * 5.77541 * 13 12 11 16 16 N 1.30636 * 119.99701 * 353.93949 * 15 13 12 17 17 Si 1.86800 * 120.00060 * 173.93555 * 15 13 12 18 18 H 1.48508 * 109.46758 * 94.98146 * 17 15 13 19 19 H 1.48494 * 109.47188 * 214.98006 * 17 15 13 20 20 H 1.48495 * 109.47148 * 334.98602 * 17 15 13 21 21 O 1.34926 * 126.17281 * 0.02562 * 9 8 7 22 22 C 1.40065 * 119.76442 * 359.74575 * 8 7 6 23 23 C 1.37627 * 119.88436 * 359.97438 * 22 8 7 24 24 H 1.08997 * 109.47401 * 299.99943 * 1 2 3 25 25 H 1.09006 * 109.47020 * 59.99809 * 1 2 3 26 26 H 1.08997 * 109.46934 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47602 * 240.00725 * 2 1 3 28 28 H 1.08996 * 109.47071 * 300.00372 * 3 2 1 29 29 H 1.09004 * 109.46368 * 59.99969 * 3 2 1 30 30 H 1.08997 * 109.46995 * 179.97438 * 3 2 1 31 31 H 1.08003 * 119.94137 * 0.02562 * 6 5 4 32 32 H 1.07995 * 120.06245 * 180.29457 * 7 6 5 33 33 H 0.96996 * 119.99739 * 179.97438 * 16 15 13 34 34 H 1.07999 * 120.05682 * 180.02562 * 22 8 7 35 35 H 1.07996 * 119.94138 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2467 -1.2208 1.0991 6 6 4.0307 -1.0226 -0.0323 7 6 5.2913 -1.5704 -0.1037 8 6 5.7798 -2.3380 0.9612 9 6 7.1237 -2.9309 0.8880 10 7 7.7040 -3.6684 1.8213 11 7 8.8753 -4.0212 1.4216 12 6 9.0960 -3.5122 0.2111 13 6 10.2524 -3.6670 -0.5525 14 1 10.3599 -3.1317 -1.4843 15 6 11.2768 -4.5185 -0.1101 16 7 11.2007 -5.0734 1.0701 17 14 12.7486 -4.8584 -1.2090 18 1 13.8529 -3.9293 -0.8585 19 1 13.1996 -6.2596 -1.0130 20 1 12.3635 -4.6562 -2.6288 21 8 7.9897 -2.8162 -0.1403 22 6 4.9837 -2.5393 2.0959 23 6 3.7269 -1.9821 2.1594 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 3.6517 -0.4336 -0.8544 32 1 5.9012 -1.4119 -0.9807 33 1 11.9084 -5.6621 1.3757 34 1 5.3558 -3.1299 2.9199 35 1 3.1121 -2.1371 3.0337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256859944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:55 Heat of formation + Delta-G solvation = 0.883410 kcal Electronic energy + Delta-G solvation = -19836.135407 eV Core-core repulsion = 16607.752419 eV Total energy + Delta-G solvation = -3228.382988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64328 -40.05881 -37.43207 -34.23293 -33.88597 -33.35088 -30.90022 -30.66225 -28.75443 -27.48909 -25.82072 -23.49726 -22.57072 -21.63476 -20.93676 -20.13465 -18.22567 -17.82964 -16.22218 -15.73661 -15.55466 -15.45680 -15.25183 -14.56699 -14.08854 -13.94383 -13.40095 -13.35140 -13.13026 -12.79366 -12.52072 -12.27758 -12.05394 -11.90840 -11.75345 -11.50508 -11.26427 -11.13716 -10.84154 -10.63039 -10.47525 -10.45686 -9.92103 -9.77338 -8.85954 -8.75927 -8.61065 -7.35494 -7.00453 -4.94844 1.40995 1.66288 2.76585 2.91653 2.98184 3.17202 3.23876 3.64560 3.95623 4.20362 4.43683 4.59340 4.72119 4.86864 4.99586 5.08756 5.09812 5.30094 5.36396 5.50579 5.51659 5.57057 5.67851 5.77129 5.87990 5.96284 6.06515 6.29438 6.46029 6.57135 6.60359 6.83139 6.89001 7.01723 7.32549 7.40938 7.61039 7.90675 8.13377 8.37008 9.91490 10.37507 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.047548 B = 0.003297 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.743083 B = 8489.513372 C = 8942.166682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.313 6.313 5 C 0.111 3.889 6 C -0.203 4.203 7 C -0.078 4.078 8 C 0.012 3.988 9 C 0.035 3.965 10 N -0.249 5.249 11 N -0.352 5.352 12 C 0.290 3.710 13 C -0.412 4.412 14 H 0.099 0.901 15 C 0.069 3.931 16 N -0.714 5.714 17 Si 0.936 3.064 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.257 1.257 21 O -0.269 6.269 22 C -0.063 4.063 23 C -0.145 4.145 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.288 0.712 34 H 0.140 0.860 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 7.969 -3.844 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.238 4.238 4 O -0.227 6.227 5 C 0.065 3.935 6 C -0.222 4.222 7 C -0.099 4.099 8 C 0.010 3.990 9 C -0.169 4.169 10 N -0.103 5.103 11 N -0.209 5.209 12 C 0.108 3.892 13 C -0.446 4.446 14 H 0.117 0.883 15 C -0.159 4.159 16 N -0.336 5.336 17 Si 0.758 3.242 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.180 1.180 21 O -0.158 6.158 22 C -0.083 4.083 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.209 7.170 -2.430 15.224 hybrid contribution 0.646 0.560 -1.810 2.002 sum -12.562 7.730 -4.240 15.347 Atomic orbital electron populations 1.21842 0.92753 1.03064 1.02809 1.22387 0.95131 0.92653 0.87896 1.22391 1.02524 0.96064 1.02839 1.86039 1.29692 1.68526 1.38473 1.19060 0.84563 0.94953 0.94903 1.21045 0.95969 1.06510 0.98648 1.21009 0.94823 0.95950 0.98085 1.17222 0.88415 0.98255 0.95137 1.24012 0.94773 1.10587 0.87557 1.74505 1.03470 1.07865 1.24453 1.75823 1.06743 1.28143 1.10154 1.23690 0.86235 0.87344 0.91880 1.18270 0.95891 1.24224 1.06219 0.88260 1.26036 0.99856 0.94238 0.95725 1.69936 1.30690 1.17596 1.15422 0.85834 0.79180 0.78771 0.80375 1.18909 1.19468 1.18035 1.84800 1.24948 1.63712 1.42324 1.20954 0.92069 0.98073 0.97188 1.20232 0.96635 1.00960 0.98547 0.91579 0.90742 0.91692 0.90873 0.91249 0.91544 0.91568 0.85517 0.85525 0.90046 0.84244 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.56 37.16 0.36 -0.78 16 2 C 0.08 0.76 2.85 -26.73 -0.08 0.68 16 3 C -0.18 -1.60 9.17 37.16 0.34 -1.26 16 4 O -0.31 -4.17 9.79 -18.90 -0.19 -4.36 16 5 C 0.11 1.66 6.61 -38.96 -0.26 1.40 16 6 C -0.20 -3.02 8.21 -39.49 -0.32 -3.34 16 7 C -0.08 -1.39 9.72 -39.12 -0.38 -1.77 16 8 C 0.01 0.25 5.88 -104.95 -0.62 -0.37 16 9 C 0.04 0.90 7.97 -13.74 -0.11 0.79 16 10 N -0.25 -6.96 11.93 32.09 0.38 -6.57 16 11 N -0.35 -10.62 10.52 30.62 0.32 -10.29 16 12 C 0.29 8.38 7.82 -16.53 -0.13 8.25 16 13 C -0.41 -10.93 9.43 -38.34 -0.36 -11.29 16 14 H 0.10 2.40 7.86 -52.49 -0.41 1.99 16 15 C 0.07 1.70 5.49 -17.26 -0.09 1.61 16 16 N -0.71 -18.78 11.94 55.57 0.66 -18.12 16 17 Si 0.94 17.59 29.57 -169.99 -5.03 12.56 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 21 O -0.27 -7.30 10.68 1.02 0.01 -7.29 16 22 C -0.06 -1.14 9.70 -39.12 -0.38 -1.52 16 23 C -0.15 -2.26 9.97 -39.49 -0.39 -2.65 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.71 6.28 -51.93 -0.33 0.38 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.66 6.92 -51.93 -0.36 0.30 16 31 H 0.13 1.53 5.41 -52.48 -0.28 1.25 16 32 H 0.13 2.20 7.92 -52.49 -0.42 1.78 16 33 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 34 H 0.14 2.51 7.85 -52.49 -0.41 2.10 16 35 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -31.61 307.43 -5.51 -37.11 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -3.88 Total: 2.58 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.43 Total: -10.26 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 1.37 Total: -34.98 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.17 Total: -11.65 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.61 -5.51 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256859944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.998 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds