Wall clock time and date at job start Mon Mar 30 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46965 * 2 1 4 4 O 1.42901 * 109.47449 * 120.00113 * 2 1 3 5 5 C 1.35732 * 117.00076 * 155.17980 * 4 2 1 6 6 C 1.39074 * 119.88352 * 4.92956 * 5 4 2 7 7 C 1.37629 * 120.12063 * 179.72329 * 6 5 4 8 8 C 1.40070 * 119.87665 * 0.53114 * 7 6 5 9 9 C 1.47068 * 120.11612 * 179.72262 * 8 7 6 10 10 N 1.32360 * 126.16865 * 179.70976 * 9 8 7 11 11 N 1.28685 * 109.43915 * 179.85976 * 10 9 8 12 12 C 1.33161 * 109.17242 * 0.40746 * 11 10 9 13 13 C 1.39443 * 126.35931 * 179.72809 * 12 11 10 14 14 H 1.08001 * 120.00141 * 185.77968 * 13 12 11 15 15 C 1.40357 * 119.99946 * 5.77541 * 13 12 11 16 16 N 1.30636 * 119.99701 * 353.93949 * 15 13 12 17 17 Si 1.86800 * 120.00060 * 173.93555 * 15 13 12 18 18 H 1.48508 * 109.46758 * 94.98146 * 17 15 13 19 19 H 1.48494 * 109.47188 * 214.98006 * 17 15 13 20 20 H 1.48495 * 109.47148 * 334.98602 * 17 15 13 21 21 O 1.34926 * 126.17281 * 0.02562 * 9 8 7 22 22 C 1.40065 * 119.76442 * 359.74575 * 8 7 6 23 23 C 1.37627 * 119.88436 * 359.97438 * 22 8 7 24 24 H 1.08997 * 109.47401 * 299.99943 * 1 2 3 25 25 H 1.09006 * 109.47020 * 59.99809 * 1 2 3 26 26 H 1.08997 * 109.46934 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47602 * 240.00725 * 2 1 3 28 28 H 1.08996 * 109.47071 * 300.00372 * 3 2 1 29 29 H 1.09004 * 109.46368 * 59.99969 * 3 2 1 30 30 H 1.08997 * 109.46995 * 179.97438 * 3 2 1 31 31 H 1.08003 * 119.94137 * 0.02562 * 6 5 4 32 32 H 1.07995 * 120.06245 * 180.29457 * 7 6 5 33 33 H 0.96996 * 119.99739 * 179.97438 * 16 15 13 34 34 H 1.07999 * 120.05682 * 180.02562 * 22 8 7 35 35 H 1.07996 * 119.94138 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2467 -1.2208 1.0991 6 6 4.0307 -1.0226 -0.0323 7 6 5.2913 -1.5704 -0.1037 8 6 5.7798 -2.3380 0.9612 9 6 7.1237 -2.9309 0.8880 10 7 7.7040 -3.6684 1.8213 11 7 8.8753 -4.0212 1.4216 12 6 9.0960 -3.5122 0.2111 13 6 10.2524 -3.6670 -0.5525 14 1 10.3599 -3.1317 -1.4843 15 6 11.2768 -4.5185 -0.1101 16 7 11.2007 -5.0734 1.0701 17 14 12.7486 -4.8584 -1.2090 18 1 13.8529 -3.9293 -0.8585 19 1 13.1996 -6.2596 -1.0130 20 1 12.3635 -4.6562 -2.6288 21 8 7.9897 -2.8162 -0.1403 22 6 4.9837 -2.5393 2.0959 23 6 3.7269 -1.9821 2.1594 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 3.6517 -0.4336 -0.8544 32 1 5.9012 -1.4119 -0.9807 33 1 11.9084 -5.6621 1.3757 34 1 5.3558 -3.1299 2.9199 35 1 3.1121 -2.1371 3.0337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256859944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:55 Heat of formation + Delta-G solvation = -22.492350 kcal Electronic energy + Delta-G solvation = -19837.149056 eV Core-core repulsion = 16607.752419 eV Total energy + Delta-G solvation = -3229.396637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.68823 -41.22904 -38.69066 -36.20566 -35.88470 -34.26141 -32.53063 -32.01931 -30.48618 -28.20046 -27.63831 -24.87272 -24.17120 -23.37152 -22.45846 -21.48737 -19.82042 -19.28699 -17.91937 -17.37730 -17.34768 -16.86493 -16.40827 -16.01754 -15.50964 -15.31506 -14.91300 -14.54830 -14.29976 -13.78192 -13.62559 -13.48430 -13.25250 -13.13543 -13.06495 -12.97589 -12.82208 -12.56918 -12.18748 -12.05061 -11.97268 -11.82676 -11.53304 -11.45095 -10.92110 -10.35760 -10.08164 -8.98245 -8.84581 -6.97979 -0.10835 0.33180 1.09413 1.36825 1.56232 1.60307 2.03676 2.14949 2.20873 2.35320 2.83799 3.00013 3.65948 3.78425 3.89679 3.93321 4.04053 4.20189 4.24151 4.39597 4.56967 4.59798 4.73350 4.85004 4.85188 4.91378 4.94723 4.98397 5.05082 5.16811 5.18534 5.28948 5.34089 5.51571 5.65212 5.67724 5.92882 6.13540 6.40016 6.45912 8.11587 8.31915 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.047548 B = 0.003297 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.743083 B = 8489.513372 C = 8942.166682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 C -0.180 4.180 4 O -0.316 6.316 5 C 0.134 3.866 6 C -0.195 4.195 7 C -0.071 4.071 8 C -0.039 4.039 9 C 0.059 3.941 10 N -0.291 5.291 11 N -0.402 5.402 12 C 0.257 3.743 13 C -0.435 4.435 14 H 0.116 0.884 15 C 0.023 3.977 16 N -0.760 5.760 17 Si 1.026 2.974 18 H -0.252 1.252 19 H -0.260 1.260 20 H -0.245 1.245 21 O -0.278 6.278 22 C -0.058 4.058 23 C -0.145 4.145 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.161 0.839 32 H 0.127 0.873 33 H 0.299 0.701 34 H 0.131 0.869 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 9.454 -5.657 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 C -0.237 4.237 4 O -0.230 6.230 5 C 0.088 3.912 6 C -0.213 4.213 7 C -0.091 4.091 8 C -0.042 4.042 9 C -0.149 4.149 10 N -0.141 5.141 11 N -0.257 5.257 12 C 0.075 3.925 13 C -0.470 4.470 14 H 0.134 0.866 15 C -0.200 4.200 16 N -0.384 5.384 17 Si 0.842 3.158 18 H -0.177 1.177 19 H -0.184 1.184 20 H -0.168 1.168 21 O -0.168 6.168 22 C -0.078 4.078 23 C -0.164 4.164 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.179 0.821 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.149 0.851 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.934 8.657 -4.196 17.765 hybrid contribution 0.773 0.293 -1.237 1.488 sum -14.161 8.949 -5.433 17.611 Atomic orbital electron populations 1.21876 0.90811 1.03352 1.04124 1.22815 0.96683 0.93005 0.86781 1.22398 1.01693 0.95435 1.04156 1.86077 1.28292 1.68160 1.40499 1.19186 0.85047 0.92909 0.94103 1.21296 0.94489 1.05849 0.99649 1.21084 0.95890 0.95051 0.97075 1.17425 0.87094 1.01743 0.97889 1.25040 0.95622 1.08074 0.86119 1.74378 1.03725 1.10337 1.25698 1.75692 1.08078 1.30569 1.11361 1.24284 0.87375 0.88438 0.92424 1.18914 0.96000 1.25263 1.06815 0.86601 1.27375 1.02683 0.92787 0.97152 1.70031 1.32395 1.18241 1.17719 0.84564 0.74163 0.79033 0.78051 1.17653 1.18431 1.16823 1.84782 1.25134 1.63879 1.43007 1.20951 0.92819 0.97910 0.96140 1.20434 0.95661 1.00437 0.99830 0.91499 0.88247 0.91950 0.90109 0.88726 0.91596 0.92796 0.82144 0.85488 0.88980 0.85089 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.56 71.98 0.69 -0.97 16 2 C 0.06 1.00 2.85 30.60 0.09 1.09 16 3 C -0.18 -2.50 9.17 71.98 0.66 -1.84 16 4 O -0.32 -7.31 9.79 -90.55 -0.89 -8.19 16 5 C 0.13 3.64 6.61 22.67 0.15 3.79 16 6 C -0.19 -5.25 8.21 22.33 0.18 -5.07 16 7 C -0.07 -2.45 9.72 22.57 0.22 -2.23 16 8 C -0.04 -1.66 5.88 -20.07 -0.12 -1.78 16 9 C 0.06 3.19 7.97 86.93 0.69 3.88 16 10 N -0.29 -17.31 11.93 -165.61 -1.98 -19.29 16 11 N -0.40 -25.78 10.52 -169.64 -1.78 -27.57 16 12 C 0.26 15.65 7.82 84.78 0.66 16.31 16 13 C -0.44 -23.90 9.43 23.08 0.22 -23.69 16 14 H 0.12 5.70 7.86 -2.91 -0.02 5.67 16 15 C 0.02 1.16 5.49 85.39 0.47 1.63 16 16 N -0.76 -41.54 11.94 21.90 0.26 -41.28 16 17 Si 1.03 35.67 29.57 68.60 2.03 37.70 16 18 H -0.25 -8.25 7.11 99.48 0.71 -7.55 16 19 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 20 H -0.25 -7.99 7.11 99.48 0.71 -7.29 16 21 O -0.28 -15.87 10.68 -19.25 -0.21 -16.07 16 22 C -0.06 -2.12 9.70 22.57 0.22 -1.90 16 23 C -0.15 -4.24 9.97 22.33 0.22 -4.02 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 1.21 6.28 -2.39 -0.01 1.19 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.90 6.92 -2.39 -0.02 0.88 16 31 H 0.16 3.24 5.41 -2.91 -0.02 3.22 16 32 H 0.13 4.35 7.92 -2.91 -0.02 4.33 16 33 H 0.30 14.29 8.29 -92.71 -0.77 13.52 16 34 H 0.13 4.92 7.85 -2.91 -0.02 4.90 16 35 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -73.76 307.43 2.91 -70.85 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.12 Total: 18.66 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.35 Total: -14.81 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -3.50 Total: -88.14 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.09 Total: -24.26 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -73.76 2.91 -70.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256859944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.362 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds