Wall clock time and date at job start Mon Mar 30 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 S 1.81397 * 109.47187 * 114.72191 * 3 2 1 5 5 O 1.42098 * 110.54348 * 291.62395 * 4 3 2 6 6 O 1.42102 * 110.54482 * 68.37048 * 4 3 2 7 7 N 1.65598 * 104.44901 * 180.02562 * 4 3 2 8 8 C 1.47080 * 120.87958 * 269.72124 * 7 4 3 9 9 C 1.53695 * 108.27730 * 128.75447 * 8 7 4 10 10 N 1.46897 * 109.25656 * 54.08392 * 9 8 7 11 11 C 1.46903 * 110.99929 * 172.60816 * 10 9 8 12 12 C 1.50697 * 109.47203 * 294.29874 * 11 10 9 13 13 H 1.08007 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00342 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99696 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00240 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47116 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46746 * 120.00597 * 16 14 12 19 19 H 1.48497 * 109.47026 * 240.00269 * 16 14 12 20 20 C 1.46894 * 111.26740 * 296.75701 * 10 9 8 21 21 C 1.47072 * 120.88360 * 89.99986 * 7 4 3 22 22 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 23 23 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 24 24 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 25 25 H 1.08994 * 109.46880 * 234.72298 * 3 2 1 26 26 H 1.08997 * 109.46765 * 354.72161 * 3 2 1 27 27 H 1.09000 * 109.62952 * 248.52796 * 8 7 4 28 28 H 1.08997 * 109.62804 * 9.10100 * 8 7 4 29 29 H 1.09004 * 109.64779 * 294.07865 * 9 8 7 30 30 H 1.09001 * 109.42019 * 173.94997 * 9 8 7 31 31 H 1.08995 * 109.47283 * 54.30297 * 11 10 9 32 32 H 1.09000 * 109.46776 * 174.30418 * 11 10 9 33 33 H 0.97004 * 119.99808 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.49300 * 303.14042 * 20 10 9 35 35 H 1.09001 * 109.51859 * 183.08197 * 20 10 9 36 36 H 1.09004 * 109.63053 * 350.89348 * 21 7 4 37 37 H 1.08997 * 109.63127 * 111.47656 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9853 1.4712 1.5535 5 8 2.0937 1.6441 2.6463 6 8 4.0398 0.5204 1.6118 7 7 3.7570 2.9304 1.4221 8 6 5.1045 3.0220 0.8397 9 6 5.0854 4.1044 -0.2514 10 7 4.5688 5.3564 0.3172 11 6 4.6969 6.4622 -0.6414 12 6 6.1561 6.7470 -0.8876 13 1 6.9127 6.1645 -0.3829 14 6 6.5254 7.7505 -1.7580 15 7 5.6041 8.4595 -2.3730 16 14 8.3342 8.1039 -2.0627 17 1 9.1632 7.1735 -1.2552 18 1 8.6395 7.9148 -3.5037 19 1 8.6375 9.5041 -1.6721 20 6 3.1774 5.2049 0.7632 21 6 3.1157 4.1684 1.8902 22 1 -0.5400 0.9353 -0.0045 23 1 -0.5400 -0.9353 0.0045 24 1 1.8500 -0.9353 0.0046 25 1 2.7592 1.3230 -0.8389 26 1 1.3590 2.1314 -0.0945 27 1 5.8211 3.2922 1.6153 28 1 5.3797 2.0629 0.4011 29 1 4.4435 3.7856 -1.0727 30 1 6.0982 4.2636 -0.6216 31 1 4.2170 6.1866 -1.5804 32 1 4.2165 7.3524 -0.2354 33 1 5.8639 9.1657 -2.9852 34 1 2.5620 4.8709 -0.0722 35 1 2.8058 6.1622 1.1286 36 1 2.0754 3.9677 2.1465 37 1 3.6447 4.5468 2.7649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259927275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:11 Heat of formation + Delta-G solvation = -39.264194 kcal Electronic energy + Delta-G solvation = -19816.997807 eV Core-core repulsion = 16722.317839 eV Total energy + Delta-G solvation = -3094.679967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.39569 -37.17720 -35.97671 -35.22960 -34.42623 -32.35051 -30.78869 -28.09582 -27.82744 -25.11286 -23.35614 -21.85259 -20.75073 -19.89346 -18.68588 -17.62507 -16.75904 -16.43855 -16.14166 -15.27701 -14.87777 -14.47613 -14.39382 -14.17587 -13.98478 -13.71731 -13.48311 -12.78269 -12.50034 -12.24325 -12.12343 -12.03459 -11.80004 -11.78086 -11.42691 -11.29487 -11.08009 -10.85879 -10.79217 -10.63074 -10.42181 -9.94602 -9.68428 -9.30926 -8.80916 -8.49900 -7.34490 -6.09276 -4.11028 0.12911 1.87564 2.62604 3.27284 3.35315 3.39721 3.76828 4.03561 4.26159 4.36889 4.59972 4.71357 4.88097 4.97322 5.26376 5.28229 5.36954 5.45214 5.48861 5.60284 5.68028 5.78160 6.01242 6.13683 6.16239 6.22052 6.28642 6.42996 6.46600 6.71669 7.19592 7.24043 7.72530 7.99385 8.09811 8.45434 8.96919 9.53974 11.01559 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032883 B = 0.004301 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.301853 B = 6509.251257 C = 6626.823885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.165 4.165 3 C -0.602 4.602 4 S 2.611 3.389 5 O -0.955 6.955 6 O -0.955 6.955 7 N -0.998 5.998 8 C 0.124 3.876 9 C 0.049 3.951 10 N -0.533 5.533 11 C 0.193 3.807 12 C -0.509 4.509 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.039 3.961 21 C 0.128 3.872 22 H 0.104 0.896 23 H 0.110 0.890 24 H 0.126 0.874 25 H 0.140 0.860 26 H 0.133 0.867 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.023 0.977 30 H 0.097 0.903 31 H -0.009 1.009 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.024 0.976 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 -13.863 4.299 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C -0.729 4.729 4 S 2.705 3.295 5 O -0.945 6.945 6 O -0.945 6.945 7 N -0.836 5.836 8 C -0.001 4.001 9 C -0.081 4.081 10 N -0.258 5.258 11 C 0.068 3.932 12 C -0.548 4.548 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.091 4.091 21 C 0.002 3.998 22 H 0.122 0.878 23 H 0.128 0.872 24 H 0.144 0.856 25 H 0.158 0.842 26 H 0.151 0.849 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.115 0.885 31 H 0.008 0.992 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.178 -14.165 5.322 17.200 hybrid contribution 0.196 0.512 -1.832 1.912 sum -7.981 -13.653 3.490 16.195 Atomic orbital electron populations 1.24091 0.95607 1.02898 0.97038 1.22288 0.96376 0.95815 1.04013 1.29886 1.14430 1.03901 1.24714 1.05077 0.74565 0.73222 0.76650 1.93572 1.67505 1.85165 1.48265 1.93576 1.53521 1.60764 1.86686 1.57753 1.26583 1.23079 1.76217 1.21781 0.82085 0.99311 0.96930 1.22453 1.02193 0.89677 0.93745 1.61981 1.16212 1.05160 1.42465 1.19743 0.97645 0.87682 0.88140 1.21192 0.91768 1.17185 1.24619 0.91675 1.24992 0.97762 0.95988 0.95836 1.69967 1.32706 1.21937 1.29178 0.86442 0.84933 0.78228 0.77819 1.19581 1.21148 1.21003 1.22430 0.91629 0.98673 0.96358 1.21578 0.97170 0.83342 0.97668 0.87802 0.87197 0.85567 0.84163 0.84878 0.90158 0.89726 0.95859 0.88484 0.99156 0.95023 0.92939 0.95749 0.90052 0.89797 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 14.32 29.01 0.42 -0.87 16 2 C -0.17 -1.56 9.52 -36.03 -0.34 -1.90 16 3 C -0.60 -5.98 6.62 36.01 0.24 -5.74 16 4 S 2.61 33.73 5.40 -107.50 -0.58 33.15 16 5 O -0.95 -14.55 16.79 -57.54 -0.97 -15.51 16 6 O -0.96 -14.68 16.78 -57.54 -0.97 -15.64 16 7 N -1.00 -13.78 3.25 -112.98 -0.37 -14.15 16 8 C 0.12 1.81 6.50 -3.36 -0.02 1.79 16 9 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 10 N -0.53 -10.63 4.62 -235.47 -1.09 -11.72 16 11 C 0.19 4.75 4.72 -4.98 -0.02 4.73 16 12 C -0.51 -13.65 8.41 -34.44 -0.29 -13.94 16 13 H 0.07 1.72 7.13 -52.48 -0.37 1.35 16 14 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 16 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 21 C 0.13 1.77 6.46 -3.61 -0.02 1.74 16 22 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 23 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 24 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 25 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.13 1.17 7.79 -51.93 -0.40 0.76 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.07 7.19 -51.93 -0.37 0.70 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 32 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 36 H 0.08 0.99 7.19 -51.93 -0.37 0.61 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -32.81 317.12 -9.29 -42.10 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.63 Total: -2.49 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.18 Total: -11.31 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.72 Total: -51.07 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.93 Total: -31.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 33.73 SS G_CDS: -0.58 Total: 33.15 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.81 -9.29 -42.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259927275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.832 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds