Wall clock time and date at job start Mon Mar 30 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 S 1.81397 * 109.47187 * 114.72191 * 3 2 1 5 5 O 1.42098 * 110.54348 * 291.62395 * 4 3 2 6 6 O 1.42102 * 110.54482 * 68.37048 * 4 3 2 7 7 N 1.65598 * 104.44901 * 180.02562 * 4 3 2 8 8 C 1.47080 * 120.87958 * 269.72124 * 7 4 3 9 9 C 1.53695 * 108.27730 * 128.75447 * 8 7 4 10 10 N 1.46897 * 109.25656 * 54.08392 * 9 8 7 11 11 C 1.46903 * 110.99929 * 172.60816 * 10 9 8 12 12 C 1.50697 * 109.47203 * 294.29874 * 11 10 9 13 13 H 1.08007 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00342 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99696 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00240 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47116 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46746 * 120.00597 * 16 14 12 19 19 H 1.48497 * 109.47026 * 240.00269 * 16 14 12 20 20 C 1.46894 * 111.26740 * 296.75701 * 10 9 8 21 21 C 1.47072 * 120.88360 * 89.99986 * 7 4 3 22 22 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 23 23 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 24 24 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 25 25 H 1.08994 * 109.46880 * 234.72298 * 3 2 1 26 26 H 1.08997 * 109.46765 * 354.72161 * 3 2 1 27 27 H 1.09000 * 109.62952 * 248.52796 * 8 7 4 28 28 H 1.08997 * 109.62804 * 9.10100 * 8 7 4 29 29 H 1.09004 * 109.64779 * 294.07865 * 9 8 7 30 30 H 1.09001 * 109.42019 * 173.94997 * 9 8 7 31 31 H 1.08995 * 109.47283 * 54.30297 * 11 10 9 32 32 H 1.09000 * 109.46776 * 174.30418 * 11 10 9 33 33 H 0.97004 * 119.99808 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.49300 * 303.14042 * 20 10 9 35 35 H 1.09001 * 109.51859 * 183.08197 * 20 10 9 36 36 H 1.09004 * 109.63053 * 350.89348 * 21 7 4 37 37 H 1.08997 * 109.63127 * 111.47656 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9853 1.4712 1.5535 5 8 2.0937 1.6441 2.6463 6 8 4.0398 0.5204 1.6118 7 7 3.7570 2.9304 1.4221 8 6 5.1045 3.0220 0.8397 9 6 5.0854 4.1044 -0.2514 10 7 4.5688 5.3564 0.3172 11 6 4.6969 6.4622 -0.6414 12 6 6.1561 6.7470 -0.8876 13 1 6.9127 6.1645 -0.3829 14 6 6.5254 7.7505 -1.7580 15 7 5.6041 8.4595 -2.3730 16 14 8.3342 8.1039 -2.0627 17 1 9.1632 7.1735 -1.2552 18 1 8.6395 7.9148 -3.5037 19 1 8.6375 9.5041 -1.6721 20 6 3.1774 5.2049 0.7632 21 6 3.1157 4.1684 1.8902 22 1 -0.5400 0.9353 -0.0045 23 1 -0.5400 -0.9353 0.0045 24 1 1.8500 -0.9353 0.0046 25 1 2.7592 1.3230 -0.8389 26 1 1.3590 2.1314 -0.0945 27 1 5.8211 3.2922 1.6153 28 1 5.3797 2.0629 0.4011 29 1 4.4435 3.7856 -1.0727 30 1 6.0982 4.2636 -0.6216 31 1 4.2170 6.1866 -1.5804 32 1 4.2165 7.3524 -0.2354 33 1 5.8639 9.1657 -2.9852 34 1 2.5620 4.8709 -0.0722 35 1 2.8058 6.1622 1.1286 36 1 2.0754 3.9677 2.1465 37 1 3.6447 4.5468 2.7649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259927275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:10 Heat of formation + Delta-G solvation = -63.954898 kcal Electronic energy + Delta-G solvation = -19818.068476 eV Core-core repulsion = 16722.317839 eV Total energy + Delta-G solvation = -3095.750637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75857 -38.27643 -37.07751 -36.01969 -35.89180 -34.25891 -32.05679 -29.63663 -28.80388 -26.75999 -24.65671 -23.59749 -21.77993 -20.87410 -19.79408 -18.74044 -18.46513 -17.68525 -17.22664 -16.70193 -16.11082 -15.90750 -15.66545 -15.48565 -15.29872 -14.89690 -14.68204 -14.09356 -13.66902 -13.55140 -13.48567 -13.23909 -13.18767 -12.86982 -12.63486 -12.59363 -12.50009 -12.29848 -12.22328 -12.20950 -11.99818 -11.54263 -11.24811 -10.60700 -10.48556 -9.95999 -8.95712 -8.19009 -6.28224 -0.85738 1.22062 1.42521 1.44308 1.56859 1.58803 2.41994 2.82075 3.06808 3.14215 3.29218 3.47462 3.70599 3.82351 4.13935 4.26875 4.33987 4.36906 4.39097 4.50668 4.57893 4.77465 4.88214 4.89871 5.04235 5.08559 5.12488 5.25992 5.30017 5.51450 5.54306 5.58000 5.67784 6.07621 6.35492 6.66015 6.88791 7.41903 8.92055 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032883 B = 0.004301 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.301853 B = 6509.251257 C = 6626.823885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.195 4.195 3 C -0.582 4.582 4 S 2.618 3.382 5 O -0.981 6.981 6 O -0.983 6.983 7 N -1.002 6.002 8 C 0.132 3.868 9 C 0.050 3.950 10 N -0.544 5.544 11 C 0.208 3.792 12 C -0.521 4.521 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.935 5.935 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.282 1.282 20 C 0.037 3.963 21 C 0.133 3.867 22 H 0.111 0.889 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.154 0.846 26 H 0.149 0.851 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.030 0.970 30 H 0.078 0.922 31 H -0.035 1.035 32 H 0.006 0.994 33 H 0.263 0.737 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -15.181 4.223 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.215 4.215 3 C -0.713 4.713 4 S 2.716 3.284 5 O -0.971 6.971 6 O -0.974 6.974 7 N -0.840 5.840 8 C 0.007 3.993 9 C -0.080 4.080 10 N -0.269 5.269 11 C 0.082 3.918 12 C -0.559 4.559 13 H 0.083 0.917 14 C -0.195 4.195 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.092 4.092 21 C 0.008 3.992 22 H 0.129 0.871 23 H 0.149 0.851 24 H 0.153 0.847 25 H 0.172 0.828 26 H 0.167 0.833 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.048 0.952 30 H 0.096 0.904 31 H -0.018 1.018 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.516 -15.494 5.302 18.458 hybrid contribution 0.172 0.862 -1.829 2.030 sum -8.344 -14.632 3.472 17.198 Atomic orbital electron populations 1.24438 0.95376 1.04362 0.94385 1.22479 0.97070 0.95789 1.06152 1.29671 1.14517 1.05185 1.21919 1.04812 0.74020 0.72208 0.77353 1.93534 1.67683 1.85258 1.50639 1.93535 1.54950 1.61328 1.87588 1.57734 1.26526 1.23293 1.76399 1.21656 0.82660 0.99119 0.95877 1.22456 1.01065 0.89434 0.95056 1.61871 1.18934 1.05102 1.40966 1.19378 0.96153 0.88518 0.87793 1.21520 0.92860 1.17097 1.24433 0.91671 1.25858 1.02207 0.95816 0.95615 1.70086 1.34893 1.22614 1.29964 0.85379 0.79607 0.78045 0.77849 1.18637 1.20587 1.20745 1.22529 0.89556 0.99731 0.97423 1.21550 0.98675 0.82698 0.96315 0.87096 0.85146 0.84726 0.82841 0.83305 0.90647 0.87549 0.95228 0.90359 1.01755 0.97612 0.92791 0.94830 0.90140 0.87252 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 14.32 67.78 0.97 -0.96 16 2 C -0.20 -3.14 9.52 25.64 0.24 -2.89 16 3 C -0.58 -9.96 6.62 71.24 0.47 -9.49 16 4 S 2.62 63.03 5.40 -56.49 -0.31 62.72 16 5 O -0.98 -28.29 16.79 -127.65 -2.14 -30.43 16 6 O -0.98 -28.92 16.78 -127.65 -2.14 -31.06 16 7 N -1.00 -26.13 3.25 -511.35 -1.66 -27.80 16 8 C 0.13 3.71 6.50 86.50 0.56 4.27 16 9 C 0.05 1.72 5.47 86.54 0.47 2.20 16 10 N -0.54 -21.80 4.62 -898.89 -4.15 -25.95 16 11 C 0.21 10.53 4.72 85.56 0.40 10.94 16 12 C -0.52 -28.35 8.41 25.60 0.22 -28.14 16 13 H 0.07 3.47 7.13 -2.91 -0.02 3.45 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 16 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 C 0.04 1.19 5.62 86.38 0.49 1.67 16 21 C 0.13 3.48 6.46 86.35 0.56 4.04 16 22 H 0.11 1.29 7.84 -2.91 -0.02 1.27 16 23 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 24 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 25 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.15 2.11 7.79 -2.39 -0.02 2.10 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.11 2.52 7.19 -2.39 -0.02 2.51 16 29 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 2.99 6.67 -2.39 -0.02 2.98 16 31 H -0.04 -1.93 8.12 -2.39 -0.02 -1.95 16 32 H 0.01 0.32 7.97 -2.39 -0.02 0.30 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 2.54 7.99 -2.39 -0.02 2.52 16 36 H 0.11 2.33 7.19 -2.39 -0.02 2.31 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.50 317.12 -2.21 -72.72 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.04 Total: 6.90 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 4.85 Total: -17.73 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -5.53 Total: -108.34 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -4.29 Total: -61.49 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 63.03 SS G_CDS: -0.31 Total: 62.72 kcal Total: -70.50 -2.21 -72.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259927275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.761 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds