Wall clock time and date at job start Mon Mar 30 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46769 * 173.03323 * 3 2 1 5 5 C 1.37095 * 119.99779 * 264.13964 * 4 3 2 6 6 H 1.08005 * 120.00237 * 197.43998 * 5 4 3 7 7 C 1.38949 * 120.00451 * 17.43996 * 5 4 3 8 8 N 1.31414 * 119.99973 * 21.51906 * 7 5 4 9 9 Si 1.86803 * 120.00190 * 201.52087 * 7 5 4 10 10 H 1.48503 * 109.47058 * 60.00020 * 9 7 5 11 11 H 1.48496 * 109.47103 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47260 * 299.99695 * 9 7 5 13 13 C 1.34773 * 119.99908 * 84.14565 * 4 3 2 14 14 O 1.21298 * 119.99896 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00293 * 359.97438 * 13 4 3 16 16 O 1.42893 * 109.47387 * 180.02562 * 15 13 4 17 17 C 1.42897 * 114.00154 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47299 * 180.02562 * 17 16 15 19 19 C 1.38651 * 120.78586 * 269.71950 * 18 17 16 20 20 C 1.38206 * 119.15954 * 179.79569 * 19 18 17 21 21 N 1.31872 * 120.76210 * 0.48976 * 20 19 18 22 22 C 1.31873 * 121.72547 * 359.74104 * 21 20 19 23 23 C 1.38200 * 120.76288 * 0.02562 * 22 21 20 24 24 H 4.40634 * 5.51411 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47035 * 53.03928 * 3 2 1 26 26 H 1.08993 * 109.47263 * 293.03457 * 3 2 1 27 27 H 0.96997 * 120.00205 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46720 * 59.99994 * 15 13 4 29 29 H 1.08999 * 109.46809 * 300.00837 * 15 13 4 30 30 H 1.08999 * 109.47246 * 300.00273 * 17 16 15 31 31 H 1.09002 * 109.47165 * 60.00127 * 17 16 15 32 32 H 1.08000 * 120.42247 * 0.02562 * 19 18 17 33 33 H 1.07993 * 119.61727 * 180.21057 * 20 19 18 34 34 H 1.08006 * 119.61271 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.41554 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3720 -0.1675 5 6 3.4762 1.8302 -1.4134 6 1 4.0883 2.7143 -1.5142 7 6 3.0359 1.1574 -2.5466 8 7 1.9849 0.3715 -2.4772 9 14 3.9379 1.3698 -4.1686 10 1 5.3468 0.9269 -4.0132 11 1 3.2746 0.5508 -5.2147 12 1 3.9096 2.8000 -4.5671 13 6 3.2456 2.1829 0.9031 14 8 3.6489 3.3184 0.7643 15 6 2.8687 1.6793 2.2725 16 8 3.0728 2.7162 3.2343 17 6 2.7430 2.3405 4.5729 18 6 2.9946 3.5037 5.4976 19 6 4.2286 3.6716 6.1072 20 6 4.4238 4.7527 6.9458 21 7 3.4506 5.6124 7.1757 22 6 2.2633 5.4814 6.6171 23 6 1.9960 4.4278 5.7636 24 1 -1.0501 -0.0004 0.0002 25 1 3.0096 -0.6171 -0.8212 26 1 3.0095 -0.4013 0.9457 27 1 1.6777 -0.0985 -3.2682 28 1 3.4891 0.8199 2.5270 29 1 1.8196 1.3834 2.2747 30 1 1.6913 2.0583 4.6225 31 1 3.3607 1.4950 4.8757 32 1 5.0282 2.9687 5.9260 33 1 5.3831 4.8926 7.4217 34 1 1.4906 6.2054 6.8298 35 1 1.0214 4.3257 5.3095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261138532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:25 Heat of formation + Delta-G solvation = 32.018569 kcal Electronic energy + Delta-G solvation = -19979.689775 eV Core-core repulsion = 16752.656909 eV Total energy + Delta-G solvation = -3227.032866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21549 -38.86813 -37.23148 -35.12289 -33.18697 -32.18471 -31.28374 -31.27900 -28.31561 -26.61802 -26.06042 -24.09530 -23.53497 -22.03568 -19.39253 -17.96730 -17.18542 -16.71994 -16.55425 -16.35845 -15.80827 -15.56071 -15.39156 -14.72691 -14.17484 -13.99566 -13.77737 -13.68153 -13.45454 -12.75368 -12.44228 -12.23321 -11.90579 -11.63669 -11.45830 -11.43816 -11.00611 -10.57192 -10.36466 -9.81100 -9.57053 -9.55040 -9.43897 -9.28248 -9.21084 -8.96579 -8.41656 -7.92196 -6.37690 -3.90358 1.07510 1.08606 3.15156 3.22976 3.24908 3.45886 3.64835 3.82798 3.95867 4.01763 4.20381 4.38464 4.63506 4.64626 4.98173 5.00121 5.05472 5.14115 5.28147 5.31630 5.37222 5.52163 5.55206 5.64855 5.71091 5.84000 5.89313 6.20165 6.26414 6.61108 6.66652 6.94504 7.24026 7.52882 7.87482 8.00317 8.38602 8.72236 9.08885 9.28832 9.84408 10.63332 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.003772 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.107486 B = 7422.150257 C = 7943.244278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.118 4.118 3 C 0.230 3.770 4 N -0.439 5.439 5 C -0.315 4.315 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.863 5.863 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.452 3.548 14 O -0.562 6.562 15 C 0.053 3.947 16 O -0.353 6.353 17 C 0.095 3.905 18 C -0.038 4.038 19 C -0.151 4.151 20 C 0.093 3.907 21 N -0.486 5.486 22 C 0.094 3.906 23 C -0.151 4.151 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.269 0.731 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -2.029 14.195 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.119 4.119 3 C 0.106 3.894 4 N -0.159 5.159 5 C -0.442 4.442 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.501 5.501 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.239 3.761 14 O -0.444 6.444 15 C -0.027 4.027 16 O -0.271 6.271 17 C 0.018 3.982 18 C -0.046 4.046 19 C -0.171 4.171 20 C -0.063 4.063 21 N -0.195 5.195 22 C -0.063 4.063 23 C -0.170 4.170 24 H 0.217 0.783 25 H 0.131 0.869 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.153 -0.690 14.478 14.495 hybrid contribution -0.370 -1.101 -1.549 1.937 sum -0.523 -1.792 12.928 13.062 Atomic orbital electron populations 1.24306 0.95395 1.01712 1.06153 1.23193 0.94379 0.98728 0.95631 1.18299 0.84321 0.86084 1.00652 1.43635 1.56504 1.09286 1.06507 1.19630 1.30296 1.13807 0.80505 0.87737 1.25287 0.95112 0.97302 0.99500 1.70075 1.19665 1.29740 1.30621 0.86042 0.79589 0.78638 0.80756 1.19831 1.21017 1.19799 1.19659 0.85133 0.86195 0.85073 1.90562 1.49696 1.18621 1.85511 1.22332 1.00674 0.90261 0.89466 1.88099 1.87558 1.37334 1.14086 1.21331 1.00118 0.93804 0.82901 1.20044 0.93823 0.95866 0.94871 1.22102 0.97249 0.99795 0.97957 1.22739 0.97954 0.90261 0.95380 1.67648 1.01014 1.27894 1.22994 1.22744 0.94213 0.96171 0.93162 1.22113 1.00677 0.95208 0.99051 0.78297 0.86931 0.92128 0.92024 0.91737 0.91297 0.92038 0.92059 0.84570 0.82656 0.82640 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.11 19.25 29.55 0.57 -4.54 16 2 C -0.12 -2.54 10.87 -37.12 -0.40 -2.94 16 3 C 0.23 4.88 4.91 -6.82 -0.03 4.85 16 4 N -0.44 -10.97 2.60 -117.93 -0.31 -11.27 16 5 C -0.32 -8.62 9.33 -14.93 -0.14 -8.76 16 6 H 0.10 3.02 7.39 -52.48 -0.39 2.64 16 7 C 0.03 0.83 4.87 -17.47 -0.08 0.74 16 8 N -0.86 -22.21 9.48 55.50 0.53 -21.68 16 9 Si 0.92 20.22 29.60 -169.99 -5.03 15.19 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.45 11.19 7.64 -10.99 -0.08 11.10 16 14 O -0.56 -16.31 16.15 -14.37 -0.23 -16.54 16 15 C 0.05 0.99 5.02 36.01 0.18 1.17 16 16 O -0.35 -6.65 9.86 -55.14 -0.54 -7.19 16 17 C 0.10 1.27 6.11 36.01 0.22 1.49 16 18 C -0.04 -0.50 5.55 -104.32 -0.58 -1.07 16 19 C -0.15 -1.80 9.82 -39.44 -0.39 -2.18 16 20 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 21 N -0.49 -6.31 10.36 -13.25 -0.14 -6.44 16 22 C 0.09 1.10 11.18 -17.55 -0.20 0.90 16 23 C -0.15 -1.83 9.82 -39.45 -0.39 -2.22 16 24 H 0.20 3.20 7.80 -54.08 -0.42 2.78 16 25 H 0.11 2.52 6.44 -51.93 -0.33 2.18 16 26 H 0.06 1.04 6.69 -51.93 -0.35 0.69 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.06 1.01 7.42 -51.93 -0.39 0.62 16 29 H 0.07 1.21 7.50 -51.93 -0.39 0.82 16 30 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16 35 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -33.88 314.90 -6.43 -40.31 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.93 Total: 3.47 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.52 Total: -0.58 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.08 Total: -39.40 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.78 Total: -23.74 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.88 -6.43 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261138532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.332 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds