Wall clock time and date at job start Mon Mar 30 2020 01:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00001 * 2 1 4 4 N 1.46505 * 109.47076 * 124.99580 * 3 2 1 5 5 C 1.46494 * 120.00248 * 278.01480 * 4 3 2 6 6 C 1.50699 * 109.46915 * 269.99712 * 5 4 3 7 7 H 1.07997 * 120.00069 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99688 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99761 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00375 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47305 * 89.99605 * 10 8 6 12 12 H 1.48502 * 109.47196 * 210.00388 * 10 8 6 13 13 H 1.48509 * 109.46799 * 329.99889 * 10 8 6 14 14 C 1.34783 * 119.99647 * 98.01096 * 4 3 2 15 15 O 1.21551 * 119.99933 * 186.03376 * 14 4 3 16 16 C 1.47857 * 119.99855 * 6.03657 * 14 4 3 17 17 C 1.39710 * 120.48074 * 330.54220 * 16 14 4 18 18 N 1.31750 * 120.94413 * 179.97438 * 17 16 14 19 19 C 1.31718 * 122.07331 * 359.97438 * 18 17 16 20 20 C 1.39909 * 120.84193 * 359.97438 * 19 18 17 21 21 C 1.47176 * 120.51679 * 179.97438 * 20 19 18 22 22 O 1.21254 * 119.99634 * 180.02562 * 21 20 19 23 23 C 1.39667 * 120.47647 * 150.50107 * 16 14 4 24 24 H 1.07999 * 119.99590 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.00090 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99590 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47274 * 4.99941 * 3 2 1 28 28 H 1.08994 * 109.46975 * 244.99404 * 3 2 1 29 29 H 1.08996 * 109.46936 * 30.00155 * 5 4 3 30 30 H 1.08999 * 109.46998 * 149.99469 * 5 4 3 31 31 H 0.97003 * 119.99671 * 179.97438 * 9 8 6 32 32 H 1.07996 * 119.52851 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.57968 * 180.02562 * 19 18 17 34 34 H 1.07992 * 120.00231 * 359.97438 * 21 20 19 35 35 H 1.08001 * 120.93121 * 0.03396 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5135 1.6985 2.4661 6 6 2.6387 3.1886 2.6531 7 1 3.0358 3.8013 1.8573 8 6 2.2452 3.7698 3.8398 9 7 2.3540 5.0703 4.0029 10 14 1.5576 2.7103 5.2161 11 1 2.6668 2.2571 6.0933 12 1 0.5878 3.5030 6.0137 13 1 0.8715 1.5283 4.6351 14 6 4.2914 1.0191 0.9446 15 8 5.0396 0.9342 1.8988 16 6 4.8047 0.7794 -0.4211 17 6 3.9643 0.2722 -1.4152 18 7 4.4120 0.0556 -2.6353 19 6 5.6597 0.3036 -2.9767 20 6 6.5704 0.8138 -2.0452 21 6 7.9631 1.0877 -2.4344 22 8 8.7446 1.5295 -1.6193 23 6 6.1367 1.0576 -0.7362 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9313 29 1 1.4687 1.4058 2.5693 30 1 3.1105 1.1862 3.2205 31 1 2.0768 5.4793 4.8377 32 1 2.9329 0.0545 -1.1802 33 1 5.9837 0.1113 -3.9889 34 1 8.2892 0.8945 -3.4456 35 1 6.8129 1.4505 0.0086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298472344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:49 Heat of formation + Delta-G solvation = 25.904728 kcal Electronic energy + Delta-G solvation = -20515.097080 eV Core-core repulsion = 17287.799098 eV Total energy + Delta-G solvation = -3227.297982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95987 -39.27284 -38.38253 -36.23066 -33.41244 -32.67952 -32.40489 -31.86312 -28.42015 -26.39738 -25.28019 -24.54586 -22.30826 -21.66476 -20.35675 -19.03213 -17.54298 -17.26264 -17.18065 -16.94971 -15.86253 -15.35623 -15.11125 -14.77063 -14.57813 -14.23995 -14.09667 -13.58642 -13.50721 -13.25040 -13.03153 -12.53167 -12.30787 -11.72987 -11.46924 -11.35809 -10.99915 -10.59724 -10.51483 -10.24436 -10.05192 -9.79305 -9.64775 -9.50007 -9.30927 -9.10369 -8.64554 -7.93196 -6.14477 -4.14595 0.18820 0.83483 2.13460 2.19060 3.12086 3.25648 3.31545 3.33771 3.49278 3.81900 3.91309 4.17933 4.34661 4.54229 4.56563 4.72995 4.90874 5.01362 5.08304 5.16496 5.19567 5.28907 5.38085 5.78505 5.83374 5.91232 5.99799 6.26073 6.57634 6.59514 6.70181 6.85448 7.12705 7.15798 7.52494 7.56649 7.99544 8.37747 8.68356 8.88049 9.44750 10.98603 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.005541 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.522538 B = 5052.185836 C = 6112.020234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.189 4.189 3 C 0.107 3.893 4 N -0.577 5.577 5 C 0.217 3.783 6 C -0.535 4.535 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.554 3.446 15 O -0.527 6.527 16 C -0.183 4.183 17 C 0.127 3.873 18 N -0.495 5.495 19 C 0.160 3.840 20 C -0.256 4.256 21 C 0.388 3.612 22 O -0.452 6.452 23 C 0.035 3.965 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.195 0.805 33 H 0.169 0.831 34 H 0.113 0.887 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -11.427 -15.916 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.208 4.208 3 C -0.016 4.016 4 N -0.306 5.306 5 C 0.097 3.903 6 C -0.573 4.573 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.340 3.660 15 O -0.404 6.404 16 C -0.188 4.188 17 C -0.028 4.028 18 N -0.203 5.203 19 C 0.001 3.999 20 C -0.259 4.259 21 C 0.245 3.755 22 O -0.324 6.324 23 C 0.009 3.991 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.211 0.789 33 H 0.186 0.814 34 H 0.129 0.871 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.370 -11.382 -15.397 19.196 hybrid contribution 0.010 -0.035 1.363 1.364 sum 1.380 -11.417 -14.034 18.144 Atomic orbital electron populations 1.23923 0.95653 1.02265 0.98061 1.23326 0.96682 0.98719 1.02049 1.21372 0.93700 0.96016 0.90549 1.47791 1.06669 1.65306 1.10873 1.19738 0.94827 0.96999 0.78746 1.21296 1.43521 0.90310 1.02165 0.90686 1.24835 0.95067 0.94885 0.98011 1.69894 1.47479 1.09728 1.26167 0.86862 0.79482 0.80727 0.82740 1.19809 1.20964 1.18948 1.17880 0.82695 0.78197 0.87228 1.90779 1.56211 1.51588 1.41862 1.21280 0.95586 1.05054 0.96876 1.24621 1.00992 0.89827 0.87398 1.67835 1.15804 1.17346 1.19310 1.23283 0.88172 0.89403 0.99031 1.21979 0.99331 1.08619 0.95954 1.23925 0.85276 0.72955 0.93310 1.90578 1.55022 1.31810 1.54977 1.22038 0.93998 0.87790 0.95317 0.87852 0.88249 0.87078 0.88778 0.88610 0.94711 0.94142 0.92444 0.78880 0.81436 0.87056 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 14.32 29.01 0.42 -1.38 16 2 C -0.19 -2.37 8.23 -36.03 -0.30 -2.67 16 3 C 0.11 1.63 5.33 -5.19 -0.03 1.60 16 4 N -0.58 -11.62 2.45 -177.55 -0.43 -12.06 16 5 C 0.22 5.20 4.28 -5.20 -0.02 5.17 16 6 C -0.53 -15.10 9.94 -34.44 -0.34 -15.45 16 7 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 9 N -0.89 -27.31 13.96 55.43 0.77 -26.53 16 10 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 14 C 0.55 11.40 7.48 -12.32 -0.09 11.31 16 15 O -0.53 -12.97 16.31 5.32 0.09 -12.89 16 16 C -0.18 -2.95 5.59 -104.88 -0.59 -3.54 16 17 C 0.13 1.68 8.67 -17.04 -0.15 1.54 16 18 N -0.49 -5.86 10.33 -12.50 -0.13 -5.99 16 19 C 0.16 1.51 10.95 -16.98 -0.19 1.32 16 20 C -0.26 -2.86 5.88 -104.97 -0.62 -3.47 16 21 C 0.39 3.66 11.48 34.36 0.39 4.06 16 22 O -0.45 -6.41 17.23 5.58 0.10 -6.31 16 23 C 0.03 0.52 9.27 -38.37 -0.36 0.17 16 24 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 25 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 26 H 0.11 1.29 7.58 -52.49 -0.40 0.90 16 27 H 0.09 1.49 7.78 -51.93 -0.40 1.08 16 28 H 0.10 1.30 4.08 -51.94 -0.21 1.09 16 29 H 0.03 0.79 7.13 -51.93 -0.37 0.42 16 30 H 0.04 1.04 6.77 -51.93 -0.35 0.69 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.20 2.34 2.81 -52.49 -0.15 2.19 16 33 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.15 2.58 7.65 -52.49 -0.40 2.18 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -35.69 307.56 -5.16 -40.85 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.55 Total: 0.97 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.96 Total: 0.72 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.21 Total: -44.59 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.69 -5.16 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298472344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.750 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds