Wall clock time and date at job start Mon Mar 30 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00001 * 2 1 4 4 N 1.46505 * 109.47076 * 124.99580 * 3 2 1 5 5 C 1.46494 * 120.00248 * 278.01480 * 4 3 2 6 6 C 1.50699 * 109.46915 * 269.99712 * 5 4 3 7 7 H 1.07997 * 120.00069 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99688 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99761 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00375 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47305 * 89.99605 * 10 8 6 12 12 H 1.48502 * 109.47196 * 210.00388 * 10 8 6 13 13 H 1.48509 * 109.46799 * 329.99889 * 10 8 6 14 14 C 1.34783 * 119.99647 * 98.01096 * 4 3 2 15 15 O 1.21551 * 119.99933 * 186.03376 * 14 4 3 16 16 C 1.47857 * 119.99855 * 6.03657 * 14 4 3 17 17 C 1.39710 * 120.48074 * 330.54220 * 16 14 4 18 18 N 1.31750 * 120.94413 * 179.97438 * 17 16 14 19 19 C 1.31718 * 122.07331 * 359.97438 * 18 17 16 20 20 C 1.39909 * 120.84193 * 359.97438 * 19 18 17 21 21 C 1.47176 * 120.51679 * 179.97438 * 20 19 18 22 22 O 1.21254 * 119.99634 * 180.02562 * 21 20 19 23 23 C 1.39667 * 120.47647 * 150.50107 * 16 14 4 24 24 H 1.07999 * 119.99590 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.00090 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99590 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47274 * 4.99941 * 3 2 1 28 28 H 1.08994 * 109.46975 * 244.99404 * 3 2 1 29 29 H 1.08996 * 109.46936 * 30.00155 * 5 4 3 30 30 H 1.08999 * 109.46998 * 149.99469 * 5 4 3 31 31 H 0.97003 * 119.99671 * 179.97438 * 9 8 6 32 32 H 1.07996 * 119.52851 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.57968 * 180.02562 * 19 18 17 34 34 H 1.07992 * 120.00231 * 359.97438 * 21 20 19 35 35 H 1.08001 * 120.93121 * 0.03396 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5135 1.6985 2.4661 6 6 2.6387 3.1886 2.6531 7 1 3.0358 3.8013 1.8573 8 6 2.2452 3.7698 3.8398 9 7 2.3540 5.0703 4.0029 10 14 1.5576 2.7103 5.2161 11 1 2.6668 2.2571 6.0933 12 1 0.5878 3.5030 6.0137 13 1 0.8715 1.5283 4.6351 14 6 4.2914 1.0191 0.9446 15 8 5.0396 0.9342 1.8988 16 6 4.8047 0.7794 -0.4211 17 6 3.9643 0.2722 -1.4152 18 7 4.4120 0.0556 -2.6353 19 6 5.6597 0.3036 -2.9767 20 6 6.5704 0.8138 -2.0452 21 6 7.9631 1.0877 -2.4344 22 8 8.7446 1.5295 -1.6193 23 6 6.1367 1.0576 -0.7362 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9313 29 1 1.4687 1.4058 2.5693 30 1 3.1105 1.1862 3.2205 31 1 2.0768 5.4793 4.8377 32 1 2.9329 0.0545 -1.1802 33 1 5.9837 0.1113 -3.9889 34 1 8.2892 0.8945 -3.4456 35 1 6.8129 1.4505 0.0086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298472344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:48 Heat of formation + Delta-G solvation = -0.577845 kcal Electronic energy + Delta-G solvation = -20516.245451 eV Core-core repulsion = 17287.799098 eV Total energy + Delta-G solvation = -3228.446353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11608 -40.48868 -39.49021 -37.68637 -35.23729 -33.91557 -33.72220 -33.15584 -30.22445 -27.63532 -26.34667 -25.93317 -23.91884 -22.72208 -21.51360 -20.32791 -19.15114 -18.61455 -18.52282 -18.12688 -17.22439 -16.65433 -16.36415 -16.13719 -15.81138 -15.54091 -15.38539 -14.92730 -14.66115 -14.54202 -14.35339 -14.28205 -13.66381 -13.43229 -13.14721 -12.64372 -12.50987 -12.35762 -11.98752 -11.79486 -11.59265 -11.15834 -10.91432 -10.87611 -10.56115 -10.52403 -10.17823 -9.62271 -8.38686 -6.45227 -0.74899 -0.28521 1.20080 1.28672 1.30807 1.34730 1.43120 1.71047 2.16669 2.27459 2.68921 2.95415 3.06913 3.26556 3.45404 3.58204 3.69885 3.90720 4.00459 4.01601 4.18919 4.25285 4.53520 4.68680 4.75709 4.76939 4.83112 4.95215 5.02757 5.30751 5.36505 5.40400 5.65446 5.82519 6.15674 6.40939 6.42046 6.55976 6.60935 7.04803 7.21453 8.78160 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.005541 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.522538 B = 5052.185836 C = 6112.020234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.206 4.206 3 C 0.104 3.896 4 N -0.582 5.582 5 C 0.227 3.773 6 C -0.543 4.543 7 H 0.028 0.972 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.947 3.053 11 H -0.277 1.277 12 H -0.272 1.272 13 H -0.235 1.235 14 C 0.546 3.454 15 O -0.586 6.586 16 C -0.209 4.209 17 C 0.140 3.860 18 N -0.496 5.496 19 C 0.189 3.811 20 C -0.255 4.255 21 C 0.401 3.599 22 O -0.508 6.508 23 C 0.010 3.990 24 H 0.104 0.896 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.270 0.730 32 H 0.206 0.794 33 H 0.233 0.767 34 H 0.189 0.811 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -14.056 -18.918 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.225 4.225 3 C -0.017 4.017 4 N -0.311 5.311 5 C 0.105 3.895 6 C -0.581 4.581 7 H 0.046 0.954 8 C -0.184 4.184 9 N -0.582 5.582 10 Si 0.769 3.231 11 H -0.203 1.203 12 H -0.197 1.197 13 H -0.158 1.158 14 C 0.334 3.666 15 O -0.468 6.468 16 C -0.215 4.215 17 C -0.015 4.015 18 N -0.204 5.204 19 C 0.031 3.969 20 C -0.258 4.258 21 C 0.262 3.738 22 O -0.382 6.382 23 C -0.016 4.016 24 H 0.122 0.878 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.249 0.751 34 H 0.205 0.795 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.123 -14.027 -18.471 23.194 hybrid contribution 0.433 0.841 2.116 2.318 sum 0.556 -13.187 -16.355 21.016 Atomic orbital electron populations 1.24194 0.95069 1.03625 0.94920 1.23153 0.97122 0.97420 1.04797 1.21629 0.93031 0.97647 0.89432 1.47843 1.07616 1.64716 1.10896 1.19376 0.95563 0.93706 0.80807 1.21514 1.43013 0.92380 1.01186 0.95394 1.25832 0.95372 0.96252 1.00927 1.70046 1.48995 1.11923 1.27280 0.85732 0.78851 0.79724 0.78791 1.20295 1.19698 1.15802 1.18623 0.82298 0.76937 0.88702 1.90720 1.57555 1.54363 1.44141 1.20911 0.96633 1.08731 0.95179 1.24655 1.00935 0.88665 0.87222 1.68005 1.17073 1.17527 1.17827 1.24255 0.86425 0.85485 1.00768 1.22418 1.01323 1.07852 0.94164 1.24942 0.83338 0.70366 0.95180 1.90591 1.56053 1.34488 1.57106 1.22001 0.93364 0.89096 0.97141 0.87809 0.85508 0.85869 0.89834 0.87009 0.92535 0.96025 0.92114 0.77840 0.75117 0.79529 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 14.32 67.78 0.97 -1.73 16 2 C -0.21 -4.79 8.23 25.64 0.21 -4.58 16 3 C 0.10 3.17 5.33 85.63 0.46 3.63 16 4 N -0.58 -24.44 2.45 -833.93 -2.04 -26.48 16 5 C 0.23 11.22 4.28 85.63 0.37 11.58 16 6 C -0.54 -32.29 9.94 25.60 0.25 -32.03 16 7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 8 C 0.01 0.87 5.47 84.65 0.46 1.34 16 9 N -0.94 -59.93 13.96 21.45 0.30 -59.63 16 10 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 14 C 0.55 23.97 7.48 86.79 0.65 24.62 16 15 O -0.59 -31.35 16.31 -3.88 -0.06 -31.41 16 16 C -0.21 -7.01 5.59 -20.03 -0.11 -7.12 16 17 C 0.14 3.54 8.67 85.06 0.74 4.28 16 18 N -0.50 -9.94 10.33 -193.47 -2.00 -11.94 16 19 C 0.19 2.63 10.95 85.11 0.93 3.56 16 20 C -0.25 -5.12 5.88 -20.09 -0.12 -5.23 16 21 C 0.40 6.31 11.48 70.17 0.81 7.12 16 22 O -0.51 -14.22 17.23 -2.95 -0.05 -14.27 16 23 C 0.01 0.33 9.27 23.05 0.21 0.54 16 24 H 0.10 2.00 7.84 -2.91 -0.02 1.97 16 25 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 26 H 0.12 2.59 7.58 -2.91 -0.02 2.57 16 27 H 0.08 2.68 7.78 -2.39 -0.02 2.66 16 28 H 0.11 3.00 4.08 -2.40 -0.01 2.99 16 29 H 0.06 2.53 7.13 -2.39 -0.02 2.52 16 30 H 0.02 1.15 6.77 -2.39 -0.02 1.14 16 31 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 32 H 0.21 4.61 2.81 -2.91 -0.01 4.60 16 33 H 0.23 0.30 8.06 -2.91 -0.02 0.27 16 34 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 35 H 0.12 4.54 7.65 -2.91 -0.02 4.51 16 Total: -1.00 -87.24 307.56 4.92 -82.32 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.06 Total: 9.06 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.83 Total: 5.98 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -3.74 Total: -98.05 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.11 Total: -45.68 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -87.24 4.92 -82.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298472344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.743 kcal (2) G-P(sol) polarization free energy of solvation -87.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds