Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 108.23141 * 2 1 4 4 C 1.53015 * 108.32212 * 242.76295 * 2 1 3 5 5 N 1.45777 * 106.77712 * 145.85513 * 4 2 1 6 6 C 1.46896 * 111.08794 * 227.48957 * 5 4 2 7 7 C 1.50698 * 109.47098 * 302.95032 * 6 5 4 8 8 O 1.21295 * 120.00085 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99988 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99901 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99574 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00300 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99510 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47576 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47152 * 120.00366 * 14 12 10 17 17 H 1.48504 * 109.47317 * 240.00122 * 14 12 10 18 18 C 1.46864 * 110.28839 * 103.98439 * 5 4 2 19 19 C 1.53614 * 116.11111 * 318.08695 * 18 5 4 20 20 S 1.80182 * 113.03960 * 315.59469 * 19 18 5 21 21 O 1.42102 * 109.47083 * 201.15763 * 20 19 18 22 22 C 1.45863 * 108.32510 * 117.24429 * 2 1 3 23 23 H 1.09002 * 109.47153 * 299.99540 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99712 * 1 2 3 26 26 H 1.09003 * 109.97172 * 265.33338 * 4 2 1 27 27 H 1.09000 * 109.97152 * 26.64899 * 4 2 1 28 28 H 1.09001 * 109.46723 * 62.94767 * 6 5 4 29 29 H 1.08998 * 109.47493 * 182.94891 * 6 5 4 30 30 H 0.97002 * 119.99799 * 359.97438 * 9 7 6 31 31 H 0.96997 * 119.99920 * 179.97438 * 13 12 10 32 32 H 1.08997 * 108.15116 * 196.36449 * 18 5 4 33 33 H 1.09001 * 108.15235 * 79.80917 * 18 5 4 34 34 H 1.08999 * 108.77549 * 194.67245 * 19 18 5 35 35 H 1.09006 * 108.68052 * 76.44376 * 19 18 5 36 36 H 1.08993 * 109.52506 * 305.61599 * 22 2 1 37 37 H 1.09001 * 109.52474 * 65.75343 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8710 1.0353 0.0000 4 6 2.0110 -0.6648 -1.2915 5 7 3.2398 0.0151 -1.6824 6 6 3.2157 0.3730 -3.1068 7 6 2.9989 -0.8685 -3.9331 8 8 2.8769 -1.9456 -3.3888 9 7 2.9415 -0.7822 -5.2769 10 6 2.7437 -1.9115 -6.0285 11 1 2.6343 -2.8705 -5.5439 12 6 2.6841 -1.8224 -7.4139 13 7 2.8167 -0.6555 -8.0036 14 14 2.4153 -3.3613 -8.4380 15 1 2.2966 -4.5386 -7.5408 16 1 1.1683 -3.2164 -9.2314 17 1 3.5667 -3.5523 -9.3562 18 6 4.4060 -0.8209 -1.3694 19 6 4.3740 -1.5466 -0.0159 20 16 3.8177 -0.4933 1.3360 21 8 4.2642 -1.0337 2.5721 22 6 1.9886 -0.6339 1.2310 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 2.2072 -1.7224 -1.1151 27 1 1.2588 -0.5497 -2.0720 28 1 2.4050 1.0779 -3.2906 29 1 4.1654 0.8315 -3.3824 30 1 3.0395 0.0792 -5.7121 31 1 2.7754 -0.5934 -8.9707 32 1 5.2936 -0.1888 -1.3949 33 1 4.5069 -1.5705 -2.1543 34 1 5.3765 -1.9091 0.2116 35 1 3.7020 -2.4013 -0.0938 36 1 1.5352 -0.1358 2.0880 37 1 1.7026 -1.6857 1.2276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326379294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = -66.640895 kcal Electronic energy + Delta-G solvation = -19946.834519 eV Core-core repulsion = 16850.967408 eV Total energy + Delta-G solvation = -3095.867110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.45008 -37.30193 -35.53419 -34.86911 -33.82449 -31.46670 -30.85491 -27.47431 -27.19710 -25.46625 -24.11712 -21.47325 -20.11683 -19.18921 -17.93926 -17.27884 -16.34535 -16.12059 -15.72243 -15.02697 -14.93880 -14.43489 -13.95418 -13.78519 -13.78263 -13.50065 -13.33405 -12.73482 -12.54811 -12.42006 -12.09485 -11.68156 -11.49611 -11.36577 -11.07956 -11.03089 -10.73021 -10.56037 -10.46438 -10.40864 -10.32138 -9.82211 -9.57580 -9.18138 -8.13312 -8.07168 -7.62321 -6.51812 -3.93119 1.60891 2.64160 3.08363 3.20542 3.26928 3.76944 3.88399 4.08911 4.18749 4.79193 4.90380 4.97303 5.06227 5.16006 5.19943 5.27004 5.51535 5.65909 5.77376 5.83875 5.88078 5.93852 5.98008 6.02681 6.14087 6.18205 6.24691 6.29544 6.39121 6.59246 7.22262 7.34294 7.45391 7.94559 8.48488 9.06751 9.42708 9.92379 10.64818 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.004350 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.325657 B = 6435.137933 C = 6689.100759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 H 0.092 0.908 4 C 0.056 3.944 5 N -0.508 5.508 6 C 0.040 3.960 7 C 0.403 3.597 8 O -0.597 6.597 9 N -0.556 5.556 10 C -0.303 4.303 11 H 0.102 0.898 12 C 0.025 3.975 13 N -0.897 5.897 14 Si 0.928 3.072 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.070 3.930 19 C -0.435 4.435 20 S 1.236 4.764 21 O -0.872 6.872 22 C -0.411 4.411 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.394 0.606 31 H 0.272 0.728 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 6.957 11.272 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 H 0.110 0.890 4 C -0.073 4.073 5 N -0.230 5.230 6 C -0.092 4.092 7 C 0.188 3.812 8 O -0.484 6.484 9 N -0.191 5.191 10 C -0.433 4.433 11 H 0.120 0.880 12 C -0.177 4.177 13 N -0.538 5.538 14 Si 0.755 3.245 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.059 4.059 19 C -0.573 4.573 20 S 1.437 4.563 21 O -0.868 6.868 22 C -0.548 4.548 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.227 0.773 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.093 7.228 12.377 14.333 hybrid contribution -0.872 -3.315 -1.268 3.655 sum -0.780 3.912 11.108 11.803 Atomic orbital electron populations 1.21971 0.95290 1.01583 1.01481 1.19587 0.95829 1.01579 0.92426 0.88968 1.22161 0.92181 0.97289 0.95664 1.62711 1.02718 1.41540 1.16063 1.22183 1.03789 0.96482 0.86707 1.21016 0.85239 0.91285 0.83615 1.90511 1.56788 1.29814 1.71269 1.42027 1.61618 1.10648 1.04787 1.19745 1.46344 0.88953 0.88222 0.87997 1.25273 0.97090 0.98205 0.97129 1.69608 1.49602 1.23588 1.10955 0.85827 0.77924 0.81264 0.79491 1.19316 1.20650 1.20650 1.21685 0.93637 0.96700 0.93864 1.27527 1.08433 1.11193 1.10163 1.70810 0.87177 1.13982 0.84362 1.93011 1.75425 1.81067 1.37264 1.26421 1.19222 1.05730 1.03430 0.93025 0.93181 0.92326 0.91934 0.90635 0.88615 0.88948 0.77298 0.91762 0.91009 0.91087 0.87445 0.89271 0.87535 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.82 37.16 0.33 -1.19 16 2 C -0.07 -0.82 2.14 -93.99 -0.20 -1.02 16 3 H 0.09 0.86 7.87 -51.93 -0.41 0.46 16 4 C 0.06 0.80 3.28 -4.42 -0.01 0.79 16 5 N -0.51 -6.89 4.30 -236.64 -1.02 -7.91 16 6 C 0.04 0.60 5.67 -4.98 -0.03 0.57 16 7 C 0.40 8.47 6.70 -10.99 -0.07 8.40 16 8 O -0.60 -14.35 12.10 5.54 0.07 -14.29 16 9 N -0.56 -13.07 5.29 -10.96 -0.06 -13.12 16 10 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 11 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 12 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 13 N -0.90 -23.43 13.05 55.50 0.72 -22.71 16 14 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.07 0.98 4.96 -3.53 -0.02 0.96 16 19 C -0.43 -5.73 5.58 37.48 0.21 -5.52 16 20 S 1.24 14.55 13.26 -107.50 -1.42 13.12 16 21 O -0.87 -15.37 18.14 -35.23 -0.64 -16.01 16 22 C -0.41 -4.58 5.30 33.78 0.18 -4.40 16 23 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.61 8.02 -51.93 -0.42 0.19 16 26 H 0.06 1.05 5.50 -51.93 -0.29 0.76 16 27 H 0.08 1.21 6.70 -51.93 -0.35 0.87 16 28 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 30 H 0.39 8.85 7.90 -40.82 -0.32 8.53 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.27 5.67 -51.93 -0.29 0.98 16 34 H 0.11 1.35 8.14 -51.74 -0.42 0.93 16 35 H 0.09 1.32 7.01 -51.74 -0.36 0.95 16 36 H 0.11 1.04 8.04 -51.93 -0.42 0.62 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -32.96 303.73 -7.97 -40.94 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.32 Total: 9.06 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 0.14 Total: -9.04 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.35 Total: -43.74 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.57 Total: -30.30 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 14.55 SS G_CDS: -1.42 Total: 13.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.96 -7.97 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.702 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds