Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 108.23141 * 2 1 4 4 C 1.53015 * 108.32212 * 242.76295 * 2 1 3 5 5 N 1.45777 * 106.77712 * 145.85513 * 4 2 1 6 6 C 1.46896 * 111.08794 * 227.48957 * 5 4 2 7 7 C 1.50698 * 109.47098 * 302.95032 * 6 5 4 8 8 O 1.21295 * 120.00085 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99988 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99901 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99574 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00300 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99510 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47576 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47152 * 120.00366 * 14 12 10 17 17 H 1.48504 * 109.47317 * 240.00122 * 14 12 10 18 18 C 1.46864 * 110.28839 * 103.98439 * 5 4 2 19 19 C 1.53614 * 116.11111 * 318.08695 * 18 5 4 20 20 S 1.80182 * 113.03960 * 315.59469 * 19 18 5 21 21 O 1.42102 * 109.47083 * 201.15763 * 20 19 18 22 22 C 1.45863 * 108.32510 * 117.24429 * 2 1 3 23 23 H 1.09002 * 109.47153 * 299.99540 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99712 * 1 2 3 26 26 H 1.09003 * 109.97172 * 265.33338 * 4 2 1 27 27 H 1.09000 * 109.97152 * 26.64899 * 4 2 1 28 28 H 1.09001 * 109.46723 * 62.94767 * 6 5 4 29 29 H 1.08998 * 109.47493 * 182.94891 * 6 5 4 30 30 H 0.97002 * 119.99799 * 359.97438 * 9 7 6 31 31 H 0.96997 * 119.99920 * 179.97438 * 13 12 10 32 32 H 1.08997 * 108.15116 * 196.36449 * 18 5 4 33 33 H 1.09001 * 108.15235 * 79.80917 * 18 5 4 34 34 H 1.08999 * 108.77549 * 194.67245 * 19 18 5 35 35 H 1.09006 * 108.68052 * 76.44376 * 19 18 5 36 36 H 1.08993 * 109.52506 * 305.61599 * 22 2 1 37 37 H 1.09001 * 109.52474 * 65.75343 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8710 1.0353 0.0000 4 6 2.0110 -0.6648 -1.2915 5 7 3.2398 0.0151 -1.6824 6 6 3.2157 0.3730 -3.1068 7 6 2.9989 -0.8685 -3.9331 8 8 2.8769 -1.9456 -3.3888 9 7 2.9415 -0.7822 -5.2769 10 6 2.7437 -1.9115 -6.0285 11 1 2.6343 -2.8705 -5.5439 12 6 2.6841 -1.8224 -7.4139 13 7 2.8167 -0.6555 -8.0036 14 14 2.4153 -3.3613 -8.4380 15 1 2.2966 -4.5386 -7.5408 16 1 1.1683 -3.2164 -9.2314 17 1 3.5667 -3.5523 -9.3562 18 6 4.4060 -0.8209 -1.3694 19 6 4.3740 -1.5466 -0.0159 20 16 3.8177 -0.4933 1.3360 21 8 4.2642 -1.0337 2.5721 22 6 1.9886 -0.6339 1.2310 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 2.2072 -1.7224 -1.1151 27 1 1.2588 -0.5497 -2.0720 28 1 2.4050 1.0779 -3.2906 29 1 4.1654 0.8315 -3.3824 30 1 3.0395 0.0792 -5.7121 31 1 2.7754 -0.5934 -8.9707 32 1 5.2936 -0.1888 -1.3949 33 1 4.5069 -1.5705 -2.1543 34 1 5.3765 -1.9091 0.2116 35 1 3.7020 -2.4013 -0.0938 36 1 1.5352 -0.1358 2.0880 37 1 1.7026 -1.6857 1.2276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326379294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = -93.041039 kcal Electronic energy + Delta-G solvation = -19947.979315 eV Core-core repulsion = 16850.967408 eV Total energy + Delta-G solvation = -3097.011906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90513 -38.71426 -36.79245 -36.19445 -35.46959 -33.30949 -32.11764 -28.79317 -28.14306 -26.94494 -25.63234 -22.65885 -21.27874 -20.75979 -19.80303 -18.33667 -17.77930 -17.39903 -16.92443 -16.52026 -16.30486 -15.90809 -15.55612 -15.28404 -14.91927 -14.74895 -14.44474 -14.05458 -13.84975 -13.55106 -13.48680 -13.10339 -12.98918 -12.61327 -12.44997 -12.40954 -12.21538 -12.15864 -11.87453 -11.61113 -11.51188 -11.35220 -10.92383 -10.77799 -9.97748 -9.32497 -8.96052 -8.46050 -5.94748 0.59993 1.33648 1.39926 1.52159 1.62814 2.07112 2.28310 2.81894 3.00814 3.21614 3.31861 3.76664 3.88434 4.01122 4.07100 4.29088 4.45921 4.53199 4.64496 4.72406 4.80776 4.84118 4.87136 4.91496 5.00585 5.09207 5.18681 5.29327 5.40051 5.41566 5.55520 5.91912 6.06259 6.14484 6.60790 7.13694 7.59121 8.14111 8.69678 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.004350 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.325657 B = 6435.137933 C = 6689.100759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 H 0.123 0.877 4 C 0.055 3.945 5 N -0.485 5.485 6 C 0.048 3.952 7 C 0.406 3.594 8 O -0.630 6.630 9 N -0.571 5.571 10 C -0.331 4.331 11 H 0.073 0.927 12 C -0.009 4.009 13 N -0.916 5.916 14 Si 0.985 3.015 15 H -0.279 1.279 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.072 3.928 19 C -0.437 4.437 20 S 1.300 4.700 21 O -0.927 6.927 22 C -0.409 4.409 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.398 0.602 31 H 0.277 0.723 32 H 0.106 0.894 33 H 0.028 0.972 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 8.940 11.902 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 H 0.141 0.859 4 C -0.074 4.074 5 N -0.206 5.206 6 C -0.084 4.084 7 C 0.193 3.807 8 O -0.518 6.518 9 N -0.208 5.208 10 C -0.461 4.461 11 H 0.091 0.909 12 C -0.209 4.209 13 N -0.557 5.557 14 Si 0.810 3.190 15 H -0.204 1.204 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.057 4.057 19 C -0.574 4.574 20 S 1.501 4.499 21 O -0.922 6.922 22 C -0.547 4.547 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.232 0.768 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.046 0.954 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.015 9.224 13.014 15.951 hybrid contribution -0.874 -3.963 -1.397 4.292 sum -0.889 5.261 11.617 12.784 Atomic orbital electron populations 1.21977 0.94538 1.01053 1.02762 1.19525 0.96392 1.02581 0.90229 0.85890 1.22148 0.92076 0.96081 0.97072 1.62898 1.02308 1.40596 1.14840 1.22359 1.06405 0.93706 0.85917 1.22257 0.82378 0.92893 0.83166 1.90511 1.57296 1.32124 1.71840 1.42092 1.63090 1.09977 1.05610 1.19605 1.48271 0.89081 0.89177 0.90902 1.25912 0.96606 1.00833 0.97538 1.69653 1.49953 1.24676 1.11398 0.84987 0.78343 0.77794 0.77904 1.20353 1.19625 1.19668 1.21694 0.95063 0.96241 0.92727 1.27551 1.08453 1.10758 1.10669 1.70163 0.86688 1.11519 0.81549 1.92907 1.77275 1.81872 1.40175 1.26427 1.18416 1.05277 1.04577 0.90693 0.94696 0.92119 0.95127 0.92448 0.85820 0.85976 0.76769 0.91310 0.87550 0.95392 0.86926 0.91629 0.84984 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.82 71.98 0.64 -2.05 16 2 C -0.07 -1.32 2.14 -12.98 -0.03 -1.35 16 3 H 0.12 1.74 7.87 -2.39 -0.02 1.72 16 4 C 0.06 1.54 3.28 86.52 0.28 1.83 16 5 N -0.48 -12.18 4.30 -902.61 -3.88 -16.06 16 6 C 0.05 1.32 5.67 85.56 0.49 1.81 16 7 C 0.41 17.16 6.70 87.66 0.59 17.75 16 8 O -0.63 -31.37 12.10 -3.08 -0.04 -31.41 16 9 N -0.57 -27.20 5.29 -306.98 -1.62 -28.83 16 10 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16 11 H 0.07 4.32 7.16 -2.91 -0.02 4.30 16 12 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 13 N -0.92 -47.70 13.05 21.66 0.28 -47.42 16 14 Si 0.99 42.17 29.55 68.60 2.03 44.19 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 18 C 0.07 1.93 4.96 86.52 0.43 2.36 16 19 C -0.44 -11.33 5.58 72.19 0.40 -10.92 16 20 S 1.30 28.17 13.26 -56.49 -0.75 27.42 16 21 O -0.93 -31.57 18.14 -148.98 -2.70 -34.27 16 22 C -0.41 -8.23 5.30 69.79 0.37 -7.86 16 23 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 24 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 1.12 8.02 -2.38 -0.02 1.10 16 26 H 0.03 1.06 5.50 -2.39 -0.01 1.04 16 27 H 0.06 1.83 6.70 -2.39 -0.02 1.81 16 28 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.12 2.79 8.12 -2.39 -0.02 2.77 16 30 H 0.40 17.89 7.90 -92.71 -0.73 17.16 16 31 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.01 5.67 -2.39 -0.01 1.00 16 34 H 0.11 2.79 8.14 -2.51 -0.02 2.77 16 35 H 0.06 2.02 7.01 -2.50 -0.02 2.00 16 36 H 0.13 2.10 8.04 -2.39 -0.02 2.08 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -73.75 303.73 -1.90 -75.64 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.34 Total: 26.44 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.45 Total: -15.71 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -5.22 Total: -92.31 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -2.74 Total: -65.68 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 28.17 SS G_CDS: -0.75 Total: 27.42 kcal Total: -73.75 -1.90 -75.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.400 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds