Wall clock time and date at job start Mon Mar 30 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.62485 * 2 1 4 4 C 1.52002 * 109.62663 * 120.38255 * 2 1 3 5 5 N 1.46836 * 104.50556 * 226.01993 * 4 2 1 6 6 C 1.46901 * 111.00231 * 134.27215 * 5 4 2 7 7 C 1.50696 * 109.47114 * 284.06124 * 6 5 4 8 8 O 1.21287 * 120.00253 * 354.38290 * 7 6 5 9 9 N 1.34778 * 119.99888 * 174.38448 * 7 6 5 10 10 C 1.37091 * 120.00153 * 180.02562 * 9 7 6 11 11 H 1.08005 * 120.00293 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00109 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99909 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00067 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47105 * 90.00042 * 14 12 10 16 16 H 1.48498 * 109.47563 * 210.00102 * 14 12 10 17 17 H 1.48498 * 109.47096 * 330.00249 * 14 12 10 18 18 C 1.39463 * 117.27405 * 263.31074 * 5 4 2 19 19 C 1.55081 * 110.08155 * 64.43646 * 18 5 4 20 20 S 1.79577 * 109.79252 * 288.48074 * 19 18 5 21 21 O 1.42103 * 109.46933 * 206.07377 * 20 19 18 22 22 C 1.54477 * 109.62338 * 239.42204 * 2 1 3 23 23 H 1.08998 * 109.47235 * 299.61763 * 1 2 3 24 24 H 1.08999 * 109.47256 * 179.62288 * 1 2 3 25 25 H 1.09002 * 109.47520 * 59.62310 * 1 2 3 26 26 H 1.09005 * 110.42164 * 344.76349 * 4 2 1 27 27 H 1.08998 * 110.42288 * 107.09977 * 4 2 1 28 28 H 1.09005 * 109.47084 * 44.06426 * 6 5 4 29 29 H 1.09005 * 109.46793 * 164.06032 * 6 5 4 30 30 H 0.97000 * 119.99852 * 359.97438 * 9 7 6 31 31 H 0.97004 * 119.99783 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.36757 * 184.62573 * 18 5 4 33 33 H 1.09001 * 109.36487 * 304.37713 * 18 5 4 34 34 H 1.09000 * 109.41749 * 48.58057 * 19 18 5 35 35 H 1.09000 * 109.41418 * 168.38478 * 19 18 5 36 36 H 1.09006 * 109.35834 * 321.74031 * 22 2 1 37 37 H 1.08997 * 109.36031 * 81.32992 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0406 -0.7241 1.2351 5 7 3.0939 0.1508 1.7653 6 6 2.9605 0.3141 3.2191 7 6 1.8263 1.2608 3.5162 8 8 1.2578 1.8300 2.6086 9 7 1.4437 1.4750 4.7907 10 6 0.4115 2.3357 5.0611 11 1 -0.0948 2.8426 4.2529 12 6 0.0174 2.5570 6.3750 13 7 -0.9716 3.3825 6.6342 14 14 0.8935 1.6809 7.7730 15 1 2.0352 2.5089 8.2378 16 1 -0.0545 1.4699 8.8963 17 1 1.3963 0.3675 7.2962 18 6 4.4101 -0.1487 1.4146 19 6 4.6043 0.0164 -0.1151 20 16 3.7597 -1.3103 -0.9820 21 8 4.3890 -1.5323 -2.2365 22 6 2.0488 -0.7402 -1.2527 23 1 -0.3633 0.5079 0.8934 24 1 -0.3634 -1.0276 -0.0068 25 1 -0.3634 0.5197 -0.8866 26 1 1.2400 -0.8412 1.9655 27 1 2.4512 -1.6965 0.9633 28 1 2.7551 -0.6540 3.6761 29 1 3.8874 0.7185 3.6258 30 1 1.8981 1.0195 5.5166 31 1 -1.2470 3.5367 7.5515 32 1 5.0865 0.5257 1.9398 33 1 4.6341 -1.1775 1.6967 34 1 4.1933 0.9751 -0.4312 35 1 5.6680 -0.0163 -0.3509 36 1 1.4095 -1.5996 -1.4552 37 1 2.0241 -0.0646 -2.1077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326379295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:11 Heat of formation + Delta-G solvation = -50.729597 kcal Electronic energy + Delta-G solvation = -19954.136836 eV Core-core repulsion = 16858.959691 eV Total energy + Delta-G solvation = -3095.177145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41362 -37.56806 -35.63208 -34.68596 -33.89577 -31.66648 -30.94504 -27.56576 -27.20121 -25.79704 -24.00697 -21.44723 -20.25494 -19.33930 -18.31344 -17.35512 -16.31030 -16.10632 -15.72625 -15.49787 -14.99276 -14.63697 -14.09442 -13.91327 -13.67218 -13.18940 -13.02436 -12.90035 -12.59832 -12.46589 -12.21527 -12.14307 -12.01384 -11.60110 -11.17154 -11.07327 -10.81742 -10.62103 -10.59562 -10.49655 -9.98031 -9.97348 -9.53934 -8.59730 -8.16791 -8.15717 -7.85859 -6.30245 -3.81366 1.41022 2.61610 3.01470 3.06346 3.15076 3.68256 3.77364 3.84334 4.10529 4.69093 4.77526 4.82463 4.94062 5.08327 5.19898 5.24108 5.32412 5.42817 5.58841 5.61073 5.62255 5.71862 5.85514 5.90785 5.91653 5.99957 6.05324 6.30448 6.61070 6.65632 7.12100 7.55672 7.62194 8.16061 8.62332 8.97534 9.44465 9.87007 10.83114 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.036120 B = 0.004556 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.006308 B = 6143.978038 C = 6629.348594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 H 0.099 0.901 4 C 0.066 3.934 5 N -0.555 5.555 6 C 0.049 3.951 7 C 0.450 3.550 8 O -0.552 6.552 9 N -0.596 5.596 10 C -0.302 4.302 11 H 0.119 0.881 12 C 0.040 3.960 13 N -0.884 5.884 14 Si 0.879 3.121 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.269 1.269 18 C 0.119 3.881 19 C -0.450 4.450 20 S 1.221 4.779 21 O -0.870 6.870 22 C -0.434 4.434 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.369 0.631 31 H 0.272 0.728 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.097 -12.519 -6.350 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 H 0.118 0.882 4 C -0.061 4.061 5 N -0.279 5.279 6 C -0.081 4.081 7 C 0.235 3.765 8 O -0.432 6.432 9 N -0.236 5.236 10 C -0.431 4.431 11 H 0.136 0.864 12 C -0.163 4.163 13 N -0.524 5.524 14 Si 0.706 3.294 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.012 4.012 19 C -0.589 4.589 20 S 1.422 4.578 21 O -0.865 6.865 22 C -0.572 4.572 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.201 0.799 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.922 -12.473 -7.350 17.006 hybrid contribution 0.703 0.735 0.298 1.060 sum 9.625 -11.737 -7.052 16.737 Atomic orbital electron populations 1.21838 0.94442 1.00953 1.02679 1.21158 0.96451 1.00462 0.89712 0.88249 1.22327 0.93935 0.92285 0.97538 1.57196 1.03921 1.54788 1.11967 1.21935 0.99776 0.99019 0.87407 1.19788 0.86900 0.86569 0.83262 1.90553 1.56776 1.51455 1.44413 1.42243 1.33071 1.42224 1.06109 1.19397 1.09007 1.19807 0.94848 0.86364 1.25031 0.96680 0.97160 0.97380 1.69625 1.27081 1.35225 1.20513 0.86682 0.80081 0.79781 0.82857 1.19754 1.20334 1.19496 1.20402 0.89654 0.99487 0.91669 1.27869 1.09454 1.16266 1.05299 1.70173 0.86369 1.01578 0.99703 1.93056 1.71925 1.76621 1.44896 1.28240 1.16802 1.07750 1.04397 0.90679 0.93407 0.93488 0.89144 0.92775 0.92425 0.89361 0.79852 0.91703 0.89753 0.94993 0.87835 0.87466 0.86864 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.87 37.16 0.33 -1.57 16 2 C -0.06 -0.75 2.43 -90.35 -0.22 -0.97 16 3 H 0.10 1.57 7.45 -51.93 -0.39 1.18 16 4 C 0.07 0.77 4.47 -4.37 -0.02 0.75 16 5 N -0.55 -7.07 2.84 -241.17 -0.68 -7.75 16 6 C 0.05 0.68 5.35 -4.98 -0.03 0.66 16 7 C 0.45 9.13 7.31 -10.99 -0.08 9.05 16 8 O -0.55 -13.24 15.43 5.55 0.09 -13.16 16 9 N -0.60 -13.14 5.09 -10.97 -0.06 -13.20 16 10 C -0.30 -8.13 10.16 -14.94 -0.15 -8.28 16 11 H 0.12 3.67 7.39 -52.48 -0.39 3.28 16 12 C 0.04 1.06 5.50 -17.47 -0.10 0.97 16 13 N -0.88 -25.27 13.96 55.50 0.77 -24.49 16 14 Si 0.88 18.64 27.74 -169.99 -4.71 13.93 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.11 6.52 56.52 0.37 -4.74 16 18 C 0.12 1.16 5.15 -6.55 -0.03 1.13 16 19 C -0.45 -4.76 6.00 38.26 0.23 -4.53 16 20 S 1.22 12.95 11.47 -107.50 -1.23 11.72 16 21 O -0.87 -14.58 18.14 -35.23 -0.64 -15.22 16 22 C -0.43 -4.81 6.06 37.93 0.23 -4.58 16 23 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 24 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.18 6.89 -51.93 -0.36 0.82 16 27 H 0.05 0.42 6.05 -51.43 -0.31 0.11 16 28 H 0.06 0.66 7.98 -51.93 -0.41 0.25 16 29 H 0.09 1.05 7.44 -51.93 -0.39 0.66 16 30 H 0.37 7.11 5.76 -40.82 -0.24 6.88 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.08 0.79 7.55 -51.93 -0.39 0.40 16 33 H 0.03 0.23 8.11 -51.93 -0.42 -0.19 16 34 H 0.10 1.28 7.89 -51.80 -0.41 0.87 16 35 H 0.11 1.06 8.14 -51.80 -0.42 0.64 16 36 H 0.11 1.05 7.96 -51.93 -0.41 0.64 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -35.34 306.10 -7.08 -42.42 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.39 Total: 8.51 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 0.16 Total: -7.38 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.03 Total: -45.44 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.55 Total: -28.38 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.93 kcal Atomic # 16 Polarization: 12.95 SS G_CDS: -1.23 Total: 11.72 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.34 -7.08 -42.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.305 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds