Wall clock time and date at job start Mon Mar 30 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.62485 * 2 1 4 4 C 1.52002 * 109.62663 * 120.38255 * 2 1 3 5 5 N 1.46836 * 104.50556 * 226.01993 * 4 2 1 6 6 C 1.46901 * 111.00231 * 134.27215 * 5 4 2 7 7 C 1.50696 * 109.47114 * 284.06124 * 6 5 4 8 8 O 1.21287 * 120.00253 * 354.38290 * 7 6 5 9 9 N 1.34778 * 119.99888 * 174.38448 * 7 6 5 10 10 C 1.37091 * 120.00153 * 180.02562 * 9 7 6 11 11 H 1.08005 * 120.00293 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00109 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99909 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00067 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47105 * 90.00042 * 14 12 10 16 16 H 1.48498 * 109.47563 * 210.00102 * 14 12 10 17 17 H 1.48498 * 109.47096 * 330.00249 * 14 12 10 18 18 C 1.39463 * 117.27405 * 263.31074 * 5 4 2 19 19 C 1.55081 * 110.08155 * 64.43646 * 18 5 4 20 20 S 1.79577 * 109.79252 * 288.48074 * 19 18 5 21 21 O 1.42103 * 109.46933 * 206.07377 * 20 19 18 22 22 C 1.54477 * 109.62338 * 239.42204 * 2 1 3 23 23 H 1.08998 * 109.47235 * 299.61763 * 1 2 3 24 24 H 1.08999 * 109.47256 * 179.62288 * 1 2 3 25 25 H 1.09002 * 109.47520 * 59.62310 * 1 2 3 26 26 H 1.09005 * 110.42164 * 344.76349 * 4 2 1 27 27 H 1.08998 * 110.42288 * 107.09977 * 4 2 1 28 28 H 1.09005 * 109.47084 * 44.06426 * 6 5 4 29 29 H 1.09005 * 109.46793 * 164.06032 * 6 5 4 30 30 H 0.97000 * 119.99852 * 359.97438 * 9 7 6 31 31 H 0.97004 * 119.99783 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.36757 * 184.62573 * 18 5 4 33 33 H 1.09001 * 109.36487 * 304.37713 * 18 5 4 34 34 H 1.09000 * 109.41749 * 48.58057 * 19 18 5 35 35 H 1.09000 * 109.41418 * 168.38478 * 19 18 5 36 36 H 1.09006 * 109.35834 * 321.74031 * 22 2 1 37 37 H 1.08997 * 109.36031 * 81.32992 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0406 -0.7241 1.2351 5 7 3.0939 0.1508 1.7653 6 6 2.9605 0.3141 3.2191 7 6 1.8263 1.2608 3.5162 8 8 1.2578 1.8300 2.6086 9 7 1.4437 1.4750 4.7907 10 6 0.4115 2.3357 5.0611 11 1 -0.0948 2.8426 4.2529 12 6 0.0174 2.5570 6.3750 13 7 -0.9716 3.3825 6.6342 14 14 0.8935 1.6809 7.7730 15 1 2.0352 2.5089 8.2378 16 1 -0.0545 1.4699 8.8963 17 1 1.3963 0.3675 7.2962 18 6 4.4101 -0.1487 1.4146 19 6 4.6043 0.0164 -0.1151 20 16 3.7597 -1.3103 -0.9820 21 8 4.3890 -1.5323 -2.2365 22 6 2.0488 -0.7402 -1.2527 23 1 -0.3633 0.5079 0.8934 24 1 -0.3634 -1.0276 -0.0068 25 1 -0.3634 0.5197 -0.8866 26 1 1.2400 -0.8412 1.9655 27 1 2.4512 -1.6965 0.9633 28 1 2.7551 -0.6540 3.6761 29 1 3.8874 0.7185 3.6258 30 1 1.8981 1.0195 5.5166 31 1 -1.2470 3.5367 7.5515 32 1 5.0865 0.5257 1.9398 33 1 4.6341 -1.1775 1.6967 34 1 4.1933 0.9751 -0.4312 35 1 5.6680 -0.0163 -0.3509 36 1 1.4095 -1.5996 -1.4552 37 1 2.0241 -0.0646 -2.1077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326379295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:11 Heat of formation + Delta-G solvation = -79.910830 kcal Electronic energy + Delta-G solvation = -19955.402229 eV Core-core repulsion = 16858.959691 eV Total energy + Delta-G solvation = -3096.442538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64327 -39.00740 -36.77511 -35.82067 -35.65559 -33.60434 -31.94098 -28.79899 -28.23455 -27.01543 -25.54827 -22.39915 -21.26895 -21.06347 -20.11213 -18.29057 -17.59559 -17.04209 -16.95609 -16.77380 -16.44477 -15.80640 -15.42903 -15.13316 -14.93659 -14.62552 -14.21923 -14.14131 -13.93014 -13.79295 -13.49472 -13.22481 -13.13183 -12.93074 -12.54414 -12.30919 -12.09456 -11.90117 -11.77472 -11.64343 -11.54842 -11.37092 -10.99350 -10.22299 -10.10238 -9.14449 -8.82379 -8.31562 -5.90470 0.53321 1.36426 1.42902 1.51063 1.73198 2.17126 2.31485 2.71390 2.81189 3.26862 3.37724 3.83303 3.89395 4.00241 4.21507 4.31374 4.36188 4.50140 4.54047 4.62894 4.65993 4.72075 4.83581 4.87436 4.94181 5.02374 5.14400 5.28240 5.45182 5.54513 5.65022 6.03976 6.20651 6.71320 6.76042 7.03857 7.57270 8.17904 8.86714 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.036120 B = 0.004556 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.006308 B = 6143.978038 C = 6629.348594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 H 0.062 0.938 4 C 0.064 3.936 5 N -0.580 5.580 6 C 0.061 3.939 7 C 0.449 3.551 8 O -0.597 6.597 9 N -0.601 5.601 10 C -0.317 4.317 11 H 0.052 0.948 12 C -0.021 4.021 13 N -0.944 5.944 14 Si 0.964 3.036 15 H -0.262 1.262 16 H -0.282 1.282 17 H -0.224 1.224 18 C 0.115 3.885 19 C -0.450 4.450 20 S 1.283 4.717 21 O -0.929 6.929 22 C -0.431 4.431 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.388 0.612 31 H 0.275 0.725 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.007 -16.049 -4.974 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 H 0.080 0.920 4 C -0.063 4.063 5 N -0.305 5.305 6 C -0.069 4.069 7 C 0.236 3.764 8 O -0.479 6.479 9 N -0.244 5.244 10 C -0.446 4.446 11 H 0.070 0.930 12 C -0.219 4.219 13 N -0.586 5.586 14 Si 0.785 3.215 15 H -0.187 1.187 16 H -0.208 1.208 17 H -0.147 1.147 18 C -0.014 4.014 19 C -0.590 4.590 20 S 1.485 4.515 21 O -0.925 6.925 22 C -0.569 4.569 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.224 0.776 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.864 -16.031 -6.013 20.830 hybrid contribution -0.273 1.971 -0.284 2.010 sum 11.591 -14.060 -6.296 19.279 Atomic orbital electron populations 1.21798 0.95355 1.02098 1.00411 1.21033 0.95713 0.99075 0.91746 0.91976 1.22393 0.93745 0.93993 0.96184 1.56952 1.05572 1.56301 1.11646 1.21885 0.97573 0.98913 0.88510 1.21269 0.87267 0.85924 0.81917 1.90555 1.58506 1.53075 1.45787 1.42089 1.32495 1.42232 1.07625 1.18951 1.10759 1.21221 0.93705 0.92983 1.26104 0.97338 0.97834 1.00593 1.69829 1.29605 1.37665 1.21490 0.85369 0.78499 0.80247 0.77397 1.18659 1.20788 1.14652 1.20570 0.87967 1.02461 0.90445 1.27880 1.09998 1.14688 1.06388 1.69323 0.84559 1.00515 0.97064 1.92953 1.73325 1.78578 1.47660 1.28223 1.17902 1.08107 1.02687 0.94742 0.90502 0.93930 0.90600 0.88042 0.88306 0.86201 0.77638 0.91553 0.88764 0.90338 0.90232 0.86350 0.84328 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.87 71.98 0.64 -3.18 16 2 C -0.06 -1.41 2.43 -10.62 -0.03 -1.44 16 3 H 0.06 2.05 7.45 -2.39 -0.02 2.04 16 4 C 0.06 1.31 4.47 85.99 0.38 1.70 16 5 N -0.58 -12.95 2.84 -916.92 -2.60 -15.55 16 6 C 0.06 1.44 5.35 85.56 0.46 1.90 16 7 C 0.45 17.90 7.31 87.66 0.64 18.54 16 8 O -0.60 -29.91 15.43 -3.05 -0.05 -29.96 16 9 N -0.60 -26.03 5.09 -306.99 -1.56 -27.59 16 10 C -0.32 -17.81 10.16 84.04 0.85 -16.95 16 11 H 0.05 3.53 7.39 -2.91 -0.02 3.51 16 12 C -0.02 -1.16 5.50 84.93 0.47 -0.69 16 13 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 14 Si 0.96 37.34 27.74 68.60 1.90 39.25 16 15 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.22 -6.94 6.52 99.48 0.65 -6.29 16 18 C 0.12 1.73 5.15 88.35 0.46 2.18 16 19 C -0.45 -8.32 6.00 72.69 0.44 -7.89 16 20 S 1.28 23.77 11.47 -56.49 -0.65 23.12 16 21 O -0.93 -29.68 18.14 -148.98 -2.70 -32.39 16 22 C -0.43 -8.92 6.06 72.48 0.44 -8.49 16 23 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 24 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.82 6.89 -2.38 -0.02 1.80 16 27 H 0.10 1.08 6.05 -2.70 -0.02 1.06 16 28 H 0.10 1.63 7.98 -2.38 -0.02 1.61 16 29 H 0.12 2.16 7.44 -2.38 -0.02 2.15 16 30 H 0.39 13.63 5.76 -92.71 -0.53 13.10 16 31 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.09 1.30 7.55 -2.39 -0.02 1.28 16 33 H 0.08 0.55 8.11 -2.39 -0.02 0.53 16 34 H 0.08 1.90 7.89 -2.47 -0.02 1.88 16 35 H 0.12 1.98 8.14 -2.47 -0.02 1.96 16 36 H 0.14 2.18 7.96 -2.38 -0.02 2.16 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -86.23 306.10 -0.13 -86.36 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.48 Total: 27.25 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.75 Total: -14.31 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -3.86 Total: -99.32 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -2.75 Total: -62.35 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 1.90 Total: 39.25 kcal Atomic # 16 Polarization: 23.77 SS G_CDS: -0.65 Total: 23.12 kcal Total: -86.23 -0.13 -86.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.453 kcal (2) G-P(sol) polarization free energy of solvation -86.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds