Wall clock time and date at job start Mon Mar 30 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 108.81748 * 2 1 4 4 C 1.45815 * 108.84357 * 118.48056 * 2 1 3 5 5 C 1.54000 * 113.19067 * 186.00552 * 4 2 1 6 6 N 1.44788 * 109.38435 * 278.82591 * 5 4 2 7 7 C 1.34782 * 119.83836 * 278.62666 * 6 5 4 8 8 O 1.21585 * 120.00000 * 175.04211 * 7 6 5 9 9 N 1.34781 * 119.99657 * 355.04190 * 7 6 5 10 10 C 1.46502 * 119.99522 * 185.05862 * 9 7 6 11 11 C 1.50706 * 109.46847 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00118 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99897 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00116 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00095 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46839 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47134 * 119.99557 * 15 13 11 18 18 H 1.48501 * 109.47171 * 239.99702 * 15 13 11 19 19 C 1.46387 * 120.43681 * 98.64130 * 6 5 4 20 20 C 1.53818 * 114.95435 * 317.48276 * 19 6 5 21 21 S 1.79946 * 111.13747 * 316.95173 * 20 19 6 22 22 O 1.42099 * 109.47295 * 200.50741 * 21 20 19 23 23 H 1.09000 * 109.47047 * 301.52237 * 1 2 3 24 24 H 1.09008 * 109.46572 * 61.51820 * 1 2 3 25 25 H 1.08997 * 109.46901 * 181.51634 * 1 2 3 26 26 H 1.09000 * 108.72528 * 306.92817 * 4 2 1 27 27 H 1.09005 * 108.72129 * 65.09029 * 4 2 1 28 28 H 1.08997 * 109.47789 * 38.93008 * 5 4 2 29 29 H 1.09003 * 109.47757 * 158.95125 * 5 4 2 30 30 H 0.96998 * 120.00197 * 5.04895 * 9 7 6 31 31 H 1.08993 * 109.47203 * 299.99565 * 10 9 7 32 32 H 1.08999 * 109.47273 * 59.99677 * 10 9 7 33 33 H 0.97001 * 120.00374 * 180.02562 * 14 13 11 34 34 H 1.09002 * 108.38905 * 196.06228 * 19 6 5 35 35 H 1.09002 * 108.38833 * 78.89955 * 19 6 5 36 36 H 1.09007 * 109.14867 * 196.52662 * 20 19 6 37 37 H 1.09006 * 109.10269 * 77.35160 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8817 1.0317 0.0000 4 6 2.0010 -0.6581 1.2130 5 6 3.5293 -0.5847 1.3884 6 7 4.1552 -1.6127 0.5836 7 6 4.2207 -2.8778 1.0439 8 8 4.6636 -3.7606 0.3349 9 7 3.7951 -3.1642 2.2903 10 6 3.9678 -4.5148 2.8310 11 6 3.4128 -4.5702 4.2310 12 1 2.9748 -3.6877 4.6736 13 6 3.4641 -5.7474 4.9468 14 7 3.9970 -6.8221 4.4078 15 14 2.7756 -5.8163 6.6820 16 1 2.2355 -4.4837 7.0534 17 1 1.6886 -6.8261 6.7434 18 1 3.8558 -6.1935 7.6286 19 6 4.7185 -1.2875 -0.7279 20 6 3.8548 -0.3523 -1.5912 21 16 2.1187 -0.8198 -1.5171 22 8 1.4351 -0.2830 -2.6413 23 1 -0.3633 0.5373 0.8760 24 1 -0.3633 0.4901 -0.9034 25 1 -0.3633 -1.0273 0.0272 26 1 1.5271 -0.1862 2.0737 27 1 1.7025 -1.7060 1.1810 28 1 3.8849 0.3954 1.0708 29 1 3.7826 -0.7412 2.4370 30 1 3.3746 -2.4761 2.8293 31 1 3.4374 -5.2289 2.2011 32 1 5.0284 -4.7654 2.8507 33 1 4.0328 -7.6504 4.9112 34 1 4.8724 -2.2170 -1.2761 35 1 5.6901 -0.8169 -0.5777 36 1 4.1952 -0.4046 -2.6254 37 1 3.9654 0.6702 -1.2299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686299991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:30 Heat of formation + Delta-G solvation = -65.126179 kcal Electronic energy + Delta-G solvation = -19900.389920 eV Core-core repulsion = 16804.588492 eV Total energy + Delta-G solvation = -3095.801427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92934 -36.88007 -35.79426 -34.83260 -34.10865 -32.49075 -31.00999 -28.92106 -27.07495 -24.21746 -23.64337 -22.45554 -21.48493 -19.24695 -18.00605 -17.47000 -16.75834 -16.08669 -15.83186 -15.56926 -14.90833 -14.66860 -14.47223 -13.83112 -13.74466 -13.56348 -13.41142 -12.91118 -12.62523 -12.23851 -12.14454 -12.02568 -11.92239 -11.62543 -11.32531 -11.12894 -11.08650 -10.92731 -10.91180 -10.29630 -10.01224 -9.41345 -9.35081 -8.74331 -8.55827 -8.15852 -7.77461 -6.15784 -4.22106 1.32582 2.45699 3.09295 3.23872 3.31779 3.34074 3.67060 3.80037 4.30864 4.37516 4.58796 4.69603 4.78855 4.92879 4.96490 5.18884 5.20877 5.28888 5.39094 5.45324 5.59609 5.63196 5.78189 5.82459 5.91036 5.94128 6.11415 6.72591 7.06914 7.48646 7.51855 7.57286 7.82554 8.01138 8.74072 8.87447 9.27665 9.46301 10.94397 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.004736 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.252741 B = 5911.136625 C = 6446.737102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.395 4.395 3 H 0.085 0.915 4 C -0.118 4.118 5 C 0.103 3.897 6 N -0.638 5.638 7 C 0.697 3.303 8 O -0.592 6.592 9 N -0.726 5.726 10 C 0.264 3.736 11 C -0.541 4.541 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.902 3.098 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.158 3.842 20 C -0.463 4.463 21 S 1.253 4.747 22 O -0.856 6.856 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 13.894 -6.374 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.513 4.513 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.022 4.022 6 N -0.377 5.377 7 C 0.398 3.602 8 O -0.470 6.470 9 N -0.379 5.379 10 C 0.143 3.857 11 C -0.579 4.579 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.729 3.271 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.209 1.209 19 C 0.032 3.968 20 C -0.601 4.601 21 S 1.451 4.549 22 O -0.852 6.852 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.953 12.450 -7.476 14.819 hybrid contribution -0.222 2.737 1.145 2.975 sum -3.174 15.186 -6.331 16.756 Atomic orbital electron populations 1.21570 0.91654 1.03212 1.02734 1.26067 1.03450 1.08548 1.13206 0.89674 1.20599 0.96278 1.02742 0.96151 1.21450 0.91771 0.92128 0.96824 1.46837 1.63989 1.08045 1.18837 1.16032 0.79610 0.81508 0.83021 1.90876 1.53509 1.45210 1.57443 1.45866 1.62789 1.16144 1.13053 1.19026 0.97344 0.76393 0.92920 1.21242 1.40819 0.96961 0.98883 0.91953 1.24919 0.95110 0.95330 0.98559 1.69979 1.43654 1.01096 1.37474 0.86395 0.78715 0.78143 0.83826 1.19698 1.20831 1.20902 1.20596 0.93722 0.99633 0.82813 1.27925 1.19638 1.06333 1.06207 1.71334 0.83687 1.15366 0.84538 1.93028 1.67615 1.80311 1.44206 0.91484 0.92231 0.91296 0.90107 0.89697 0.90528 0.89685 0.77827 0.95339 0.95773 0.92524 0.88068 0.91942 0.86321 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.95 37.16 0.33 -0.97 16 2 C -0.40 -3.84 2.61 -30.13 -0.08 -3.92 16 3 H 0.08 0.78 8.10 -51.92 -0.42 0.36 16 4 C -0.12 -1.11 4.46 -29.61 -0.13 -1.24 16 5 C 0.10 1.02 5.00 -4.44 -0.02 1.00 16 6 N -0.64 -8.30 2.41 -179.72 -0.43 -8.73 16 7 C 0.70 12.71 7.92 -86.91 -0.69 12.02 16 8 O -0.59 -13.18 15.68 5.29 0.08 -13.10 16 9 N -0.73 -13.99 5.40 -66.41 -0.36 -14.35 16 10 C 0.26 6.59 5.43 -5.19 -0.03 6.56 16 11 C -0.54 -13.90 9.28 -34.44 -0.32 -14.22 16 12 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.88 -25.19 13.29 55.43 0.74 -24.45 16 15 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C 0.16 1.78 6.02 -3.68 -0.02 1.75 16 20 C -0.46 -4.52 5.88 37.58 0.22 -4.30 16 21 S 1.25 14.22 12.48 -107.50 -1.34 12.87 16 22 O -0.86 -14.08 17.70 -35.23 -0.62 -14.70 16 23 H 0.07 0.57 8.11 -51.93 -0.42 0.14 16 24 H 0.06 0.66 7.85 -51.92 -0.41 0.25 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 27 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 28 H 0.08 0.61 7.50 -51.93 -0.39 0.22 16 29 H 0.08 0.84 6.66 -51.93 -0.35 0.49 16 30 H 0.39 6.35 6.07 -40.82 -0.25 6.10 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 34 H 0.10 1.27 6.92 -51.93 -0.36 0.91 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.12 1.09 8.14 -51.79 -0.42 0.67 16 37 H 0.09 0.78 7.90 -51.79 -0.41 0.37 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -33.90 310.40 -8.59 -42.49 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.47 Total: 1.89 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.83 Total: -1.69 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.05 Total: -47.53 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.54 Total: -27.80 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 14.22 SS G_CDS: -1.34 Total: 12.87 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.90 -8.59 -42.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686299991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.638 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds