Wall clock time and date at job start Mon Mar 30 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 108.81748 * 2 1 4 4 C 1.45815 * 108.84357 * 118.48056 * 2 1 3 5 5 C 1.54000 * 113.19067 * 186.00552 * 4 2 1 6 6 N 1.44788 * 109.38435 * 278.82591 * 5 4 2 7 7 C 1.34782 * 119.83836 * 278.62666 * 6 5 4 8 8 O 1.21585 * 120.00000 * 175.04211 * 7 6 5 9 9 N 1.34781 * 119.99657 * 355.04190 * 7 6 5 10 10 C 1.46502 * 119.99522 * 185.05862 * 9 7 6 11 11 C 1.50706 * 109.46847 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00118 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99897 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00116 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00095 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46839 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47134 * 119.99557 * 15 13 11 18 18 H 1.48501 * 109.47171 * 239.99702 * 15 13 11 19 19 C 1.46387 * 120.43681 * 98.64130 * 6 5 4 20 20 C 1.53818 * 114.95435 * 317.48276 * 19 6 5 21 21 S 1.79946 * 111.13747 * 316.95173 * 20 19 6 22 22 O 1.42099 * 109.47295 * 200.50741 * 21 20 19 23 23 H 1.09000 * 109.47047 * 301.52237 * 1 2 3 24 24 H 1.09008 * 109.46572 * 61.51820 * 1 2 3 25 25 H 1.08997 * 109.46901 * 181.51634 * 1 2 3 26 26 H 1.09000 * 108.72528 * 306.92817 * 4 2 1 27 27 H 1.09005 * 108.72129 * 65.09029 * 4 2 1 28 28 H 1.08997 * 109.47789 * 38.93008 * 5 4 2 29 29 H 1.09003 * 109.47757 * 158.95125 * 5 4 2 30 30 H 0.96998 * 120.00197 * 5.04895 * 9 7 6 31 31 H 1.08993 * 109.47203 * 299.99565 * 10 9 7 32 32 H 1.08999 * 109.47273 * 59.99677 * 10 9 7 33 33 H 0.97001 * 120.00374 * 180.02562 * 14 13 11 34 34 H 1.09002 * 108.38905 * 196.06228 * 19 6 5 35 35 H 1.09002 * 108.38833 * 78.89955 * 19 6 5 36 36 H 1.09007 * 109.14867 * 196.52662 * 20 19 6 37 37 H 1.09006 * 109.10269 * 77.35160 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8817 1.0317 0.0000 4 6 2.0010 -0.6581 1.2130 5 6 3.5293 -0.5847 1.3884 6 7 4.1552 -1.6127 0.5836 7 6 4.2207 -2.8778 1.0439 8 8 4.6636 -3.7606 0.3349 9 7 3.7951 -3.1642 2.2903 10 6 3.9678 -4.5148 2.8310 11 6 3.4128 -4.5702 4.2310 12 1 2.9748 -3.6877 4.6736 13 6 3.4641 -5.7474 4.9468 14 7 3.9970 -6.8221 4.4078 15 14 2.7756 -5.8163 6.6820 16 1 2.2355 -4.4837 7.0534 17 1 1.6886 -6.8261 6.7434 18 1 3.8558 -6.1935 7.6286 19 6 4.7185 -1.2875 -0.7279 20 6 3.8548 -0.3523 -1.5912 21 16 2.1187 -0.8198 -1.5171 22 8 1.4351 -0.2830 -2.6413 23 1 -0.3633 0.5373 0.8760 24 1 -0.3633 0.4901 -0.9034 25 1 -0.3633 -1.0273 0.0272 26 1 1.5271 -0.1862 2.0737 27 1 1.7025 -1.7060 1.1810 28 1 3.8849 0.3954 1.0708 29 1 3.7826 -0.7412 2.4370 30 1 3.3746 -2.4761 2.8293 31 1 3.4374 -5.2289 2.2011 32 1 5.0284 -4.7654 2.8507 33 1 4.0328 -7.6504 4.9112 34 1 4.8724 -2.2170 -1.2761 35 1 5.6901 -0.8169 -0.5777 36 1 4.1952 -0.4046 -2.6254 37 1 3.9654 0.6702 -1.2299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686299991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:30 Heat of formation + Delta-G solvation = -90.372296 kcal Electronic energy + Delta-G solvation = -19901.484674 eV Core-core repulsion = 16804.588492 eV Total energy + Delta-G solvation = -3096.896181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25035 -38.03783 -36.85118 -36.22239 -35.49572 -34.30983 -32.12333 -29.87214 -28.90581 -25.16257 -25.05374 -23.75817 -22.62999 -20.71393 -19.30098 -18.42822 -17.94249 -17.75738 -17.00051 -16.70834 -16.47823 -15.82715 -15.69703 -15.08300 -14.85319 -14.73606 -14.55721 -14.09383 -13.88593 -13.82472 -13.53591 -13.03357 -12.87755 -12.82521 -12.72532 -12.66512 -12.23903 -12.11723 -11.98032 -11.90732 -11.32402 -11.04317 -10.87076 -10.71199 -9.90406 -9.37089 -9.05053 -8.18512 -6.32950 0.42856 1.50956 1.51247 1.59222 1.64185 1.88360 2.33886 2.46548 2.73894 3.17558 3.36354 3.60126 3.76212 3.91713 4.04214 4.19945 4.38758 4.50295 4.61592 4.67235 4.71175 4.82192 4.94817 4.98838 5.05267 5.17841 5.24396 5.33754 5.44149 5.60181 5.71442 5.85195 5.97859 6.22054 6.79656 7.32790 7.37109 7.84244 8.93745 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.004736 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.252741 B = 5911.136625 C = 6446.737102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.380 4.380 3 H 0.101 0.899 4 C -0.115 4.115 5 C 0.094 3.906 6 N -0.623 5.623 7 C 0.698 3.302 8 O -0.638 6.638 9 N -0.719 5.719 10 C 0.283 3.717 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.979 3.021 16 H -0.252 1.252 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.156 3.844 20 C -0.444 4.444 21 S 1.237 4.763 22 O -0.913 6.913 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.405 0.595 31 H -0.009 1.009 32 H -0.014 1.014 33 H 0.266 0.734 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 16.502 -4.552 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.499 4.499 3 H 0.120 0.880 4 C -0.155 4.155 5 C -0.029 4.029 6 N -0.361 5.361 7 C 0.399 3.601 8 O -0.520 6.520 9 N -0.374 5.374 10 C 0.159 3.841 11 C -0.585 4.585 12 H 0.102 0.898 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.803 3.197 16 H -0.175 1.175 17 H -0.208 1.208 18 H -0.209 1.209 19 C 0.031 3.969 20 C -0.584 4.584 21 S 1.439 4.561 22 O -0.908 6.908 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.110 0.890 30 H 0.242 0.758 31 H 0.009 0.991 32 H 0.004 0.996 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.463 15.143 -5.684 16.541 hybrid contribution -0.019 1.987 0.558 2.064 sum -3.482 17.130 -5.126 18.216 Atomic orbital electron populations 1.21620 0.91641 1.03482 1.02802 1.25876 1.03429 1.09152 1.11441 0.88047 1.20597 0.95965 1.02152 0.96806 1.21792 0.91930 0.92368 0.96826 1.46752 1.63149 1.06643 1.19577 1.16126 0.78944 0.82771 0.82241 1.90850 1.55277 1.47372 1.58487 1.45399 1.63562 1.14556 1.13861 1.18430 0.94338 0.78484 0.92817 1.21630 1.40223 0.97723 0.98888 0.89760 1.25953 0.95315 0.94895 1.03212 1.70139 1.45363 1.01942 1.39549 0.85201 0.77672 0.78917 0.77946 1.17503 1.20849 1.20949 1.20737 0.94851 0.99445 0.81858 1.27689 1.17219 1.06957 1.06523 1.70777 0.84517 1.16201 0.84595 1.92970 1.69465 1.81724 1.46652 0.89492 0.93899 0.91202 0.87485 0.91123 0.87286 0.88989 0.75803 0.99078 0.99620 0.92476 0.89814 0.89812 0.85512 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.95 71.98 0.64 -1.77 16 2 C -0.38 -6.32 2.61 28.40 0.07 -6.25 16 3 H 0.10 1.42 8.10 -2.39 -0.02 1.40 16 4 C -0.12 -1.78 4.46 28.73 0.13 -1.65 16 5 C 0.09 1.51 5.00 87.04 0.43 1.95 16 6 N -0.62 -15.01 2.41 -840.78 -2.02 -17.03 16 7 C 0.70 25.34 7.92 179.05 1.42 26.75 16 8 O -0.64 -29.33 15.68 -3.98 -0.06 -29.39 16 9 N -0.72 -27.50 5.40 -482.28 -2.61 -30.11 16 10 C 0.28 14.53 5.43 85.63 0.47 14.99 16 11 C -0.55 -27.88 9.28 25.60 0.24 -27.64 16 12 H 0.08 3.84 7.60 -2.91 -0.02 3.81 16 13 C 0.01 0.30 5.46 84.65 0.46 0.76 16 14 N -0.93 -54.24 13.29 21.44 0.28 -53.96 16 15 Si 0.98 40.55 29.54 68.60 2.03 42.57 16 16 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 19 C 0.16 3.20 6.02 86.68 0.52 3.73 16 20 C -0.44 -7.60 5.88 72.26 0.42 -7.18 16 21 S 1.24 26.96 12.48 -56.49 -0.70 26.26 16 22 O -0.91 -30.17 17.70 -148.98 -2.64 -32.80 16 23 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 24 H 0.04 0.90 7.85 -2.38 -0.02 0.88 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 1.22 8.04 -2.39 -0.02 1.20 16 27 H 0.07 1.35 7.82 -2.38 -0.02 1.33 16 28 H 0.11 1.16 7.50 -2.39 -0.02 1.14 16 29 H 0.09 1.44 6.66 -2.39 -0.02 1.42 16 30 H 0.40 12.47 6.07 -92.71 -0.56 11.90 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.08 2.08 6.92 -2.39 -0.02 2.06 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.13 2.09 8.14 -2.47 -0.02 2.07 16 37 H 0.11 1.48 7.90 -2.47 -0.02 1.46 16 Total: -1.00 -76.21 310.40 -0.41 -76.62 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.50 Total: 14.14 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 4.81 Total: 3.70 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -4.34 Total: -101.10 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -2.70 Total: -62.19 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 26.96 SS G_CDS: -0.70 Total: 26.26 kcal Total: -76.21 -0.41 -76.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686299991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.752 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds