Wall clock time and date at job start Mon Mar 30 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.50699 * 110.54068 * 239.27922 * 3 2 1 5 5 O 1.21304 * 120.00433 * 237.39338 * 4 3 2 6 6 N 1.34779 * 119.99640 * 57.38890 * 4 3 2 7 7 C 1.40600 * 119.99885 * 180.02562 * 6 4 3 8 8 C 1.40648 * 126.08299 * 0.02562 * 7 6 4 9 9 N 1.30906 * 108.38863 * 180.02562 * 8 7 6 10 10 N 1.40066 * 108.40360 * 0.02562 * 9 8 7 11 11 C 1.37327 * 126.06657 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00293 * 179.97438 * 11 10 9 13 13 C 1.38985 * 119.99817 * 359.97438 * 11 10 9 14 14 N 1.31291 * 120.00369 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99874 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47194 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47141 * 119.99758 * 15 13 11 18 18 H 1.48500 * 109.47535 * 239.99723 * 15 13 11 19 19 C 1.35679 * 126.08057 * 179.71624 * 7 6 4 20 20 C 1.54893 * 110.48982 * 1.89295 * 3 2 1 21 21 C 1.54887 * 102.74533 * 80.73647 * 20 3 2 22 22 C 1.54266 * 104.19888 * 37.94403 * 21 20 3 23 23 C 1.53872 * 106.59640 * 336.38805 * 22 21 20 24 24 H 0.96993 * 120.00404 * 0.02562 * 6 4 3 25 25 H 1.07999 * 125.80537 * 359.97044 * 8 7 6 26 26 H 0.97006 * 120.00444 * 179.97438 * 14 13 11 27 27 H 1.07994 * 126.24760 * 359.97438 * 19 7 6 28 28 H 1.09001 * 110.75228 * 322.42383 * 20 3 2 29 29 H 1.09000 * 110.75571 * 199.05016 * 20 3 2 30 30 H 1.09001 * 110.48816 * 279.26329 * 21 20 3 31 31 H 1.09004 * 110.48531 * 156.62545 * 21 20 3 32 32 H 1.09003 * 110.03179 * 95.67576 * 22 21 20 33 33 H 1.09003 * 110.02980 * 217.05505 * 22 21 20 34 34 H 1.09002 * 110.03208 * 119.28196 * 23 22 21 35 35 H 1.08996 * 110.03362 * 240.71095 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1364 0.7218 1.2131 5 8 3.8789 1.6716 1.0787 6 7 2.7839 0.3115 2.4476 7 6 3.2765 0.9846 3.5795 8 6 4.1394 2.0952 3.5725 9 7 4.3763 2.4420 4.8123 10 7 3.6774 1.5699 5.6566 11 6 3.6696 1.6067 7.0294 12 1 3.0928 0.8827 7.5857 13 6 4.4041 2.5756 7.7028 14 7 5.1057 3.4554 7.0265 15 14 4.3929 2.6261 9.5700 16 1 3.5312 1.5339 10.0896 17 1 5.7768 2.4484 10.0783 18 1 3.8622 3.9357 10.0267 19 6 2.9992 0.6819 4.8727 20 6 3.1508 -1.4492 -0.0479 21 6 3.0427 -1.8050 -1.5515 22 6 3.4240 -0.4986 -2.2778 23 6 3.1475 0.6495 -1.2914 24 1 2.1905 -0.4481 2.5552 25 1 4.5394 2.5790 2.6936 26 1 5.6181 4.1319 7.4965 27 1 2.3612 -0.1178 5.2187 28 1 2.5295 -2.1143 0.5520 29 1 4.1885 -1.4844 0.2838 30 1 2.0230 -2.0972 -1.8021 31 1 3.7422 -2.6013 -1.8063 32 1 4.4806 -0.5148 -2.5454 33 1 2.8142 -0.3775 -3.1732 34 1 4.0699 1.1905 -1.0801 35 1 2.4031 1.3282 -1.7075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139603871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:54 Heat of formation + Delta-G solvation = 68.151428 kcal Electronic energy + Delta-G solvation = -20357.850621 eV Core-core repulsion = 17164.677344 eV Total energy + Delta-G solvation = -3193.173277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56566 -39.37320 -37.51288 -35.91247 -34.34674 -33.21995 -30.51292 -29.97782 -29.03488 -27.60010 -24.92394 -22.78753 -21.52942 -20.83148 -20.55715 -19.51384 -18.25869 -17.23440 -16.58414 -15.53881 -15.42278 -15.17970 -14.61316 -14.51138 -14.14813 -13.84612 -13.39224 -13.27753 -12.99352 -12.90447 -12.82985 -12.02503 -11.69539 -11.57794 -11.47116 -11.42713 -11.37971 -11.30291 -11.24291 -10.95645 -10.65325 -10.52202 -10.25687 -9.31002 -9.21726 -8.85152 -8.10029 -6.76704 -6.58572 -4.26158 2.36536 2.55822 2.74106 2.97547 3.04063 3.10068 3.45561 3.57064 3.76234 3.84145 4.23040 4.25799 4.41667 4.59073 4.81553 4.99658 5.05032 5.15500 5.22200 5.25586 5.38223 5.52525 5.67580 5.78853 5.87579 6.04412 6.13019 6.20936 6.39187 6.82678 6.91101 7.01697 7.19006 7.35566 7.82078 8.05455 8.21771 8.52760 8.73020 9.33870 9.62875 10.37384 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.042207 B = 0.003776 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.244393 B = 7412.839986 C = 7632.407048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.221 3.779 3 C 0.015 3.985 4 C 0.515 3.485 5 O -0.517 6.517 6 N -0.614 5.614 7 C -0.064 4.064 8 C -0.030 4.030 9 N -0.260 5.260 10 N -0.141 5.141 11 C -0.323 4.323 12 H 0.117 0.883 13 C 0.047 3.953 14 N -0.769 5.769 15 Si 0.935 3.065 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.081 4.081 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.103 4.103 24 H 0.397 0.603 25 H 0.177 0.823 26 H 0.275 0.725 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -9.853 -12.133 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.098 4.098 3 C 0.008 3.992 4 C 0.298 3.702 5 O -0.393 6.393 6 N -0.255 5.255 7 C -0.170 4.170 8 C -0.205 4.205 9 N -0.091 5.091 10 N 0.092 4.908 11 C -0.455 4.455 12 H 0.135 0.865 13 C -0.171 4.171 14 N -0.395 5.395 15 Si 0.759 3.241 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.232 4.232 20 C -0.145 4.145 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.141 4.141 24 H 0.230 0.770 25 H 0.194 0.806 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.439 -8.136 -11.410 14.224 hybrid contribution -0.525 -0.986 0.404 1.187 sum -2.964 -9.122 -11.006 14.599 Atomic orbital electron populations 1.81223 1.12147 1.08025 1.07848 1.28433 0.94085 0.93567 0.93708 1.19238 0.82636 0.99779 0.97565 1.19433 0.82869 0.84846 0.83046 1.90623 1.36495 1.27158 1.85024 1.42463 1.47024 1.32020 1.04007 1.17250 1.11727 1.03317 0.84687 1.24105 1.02033 0.97709 0.96703 1.78266 1.18587 1.14359 0.97889 1.44566 1.24950 1.16114 1.05178 1.19940 1.31554 1.17157 0.76873 0.86527 1.25643 0.95132 0.94958 1.01338 1.70221 1.21093 1.11904 1.36290 0.85761 0.78796 0.79000 0.80576 1.18682 1.19872 1.19894 1.21260 1.09377 1.03064 0.89527 1.22651 1.02841 0.90882 0.98138 1.22416 1.02000 0.98013 0.93880 1.22188 1.02217 0.93714 0.98138 1.22189 1.03453 0.98019 0.90486 0.77014 0.80640 0.91463 0.83678 0.90056 0.88456 0.91444 0.90457 0.90731 0.91410 0.87534 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.28 18.54 42.15 0.78 -5.50 16 2 C 0.22 2.89 13.28 -20.76 -0.28 2.62 16 3 C 0.02 0.18 0.68 -156.79 -0.11 0.07 16 4 C 0.52 8.37 6.47 -10.98 -0.07 8.30 16 5 O -0.52 -10.12 12.57 5.54 0.07 -10.05 16 6 N -0.61 -10.57 5.35 -10.00 -0.05 -10.62 16 7 C -0.06 -1.45 6.90 -83.84 -0.58 -2.03 16 8 C -0.03 -0.77 10.85 -17.04 -0.18 -0.95 16 9 N -0.26 -7.45 10.40 30.80 0.32 -7.13 16 10 N -0.14 -3.82 3.74 -11.41 -0.04 -3.86 16 11 C -0.32 -8.46 10.25 -14.81 -0.15 -8.62 16 12 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 13 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 14 N -0.77 -21.25 11.81 55.49 0.66 -20.59 16 15 Si 0.93 18.74 29.55 -169.99 -5.02 13.72 16 16 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 C -0.08 -1.88 11.49 -16.39 -0.19 -2.07 16 20 C -0.11 -0.92 5.77 -24.74 -0.14 -1.07 16 21 C -0.13 -0.90 6.59 -25.07 -0.17 -1.06 16 22 C -0.12 -0.94 6.80 -25.61 -0.17 -1.12 16 23 C -0.10 -1.06 5.72 -25.61 -0.15 -1.20 16 24 H 0.40 5.53 8.65 -40.82 -0.35 5.18 16 25 H 0.18 4.40 5.92 -52.49 -0.31 4.09 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 28 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 29 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 1.22 6.85 -51.93 -0.36 0.87 16 35 H 0.07 0.76 7.83 -51.93 -0.41 0.35 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -32.66 305.67 -4.89 -37.54 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -3.92 Total: 7.91 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.28 Total: -6.03 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 1.66 Total: -47.70 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.66 -4.89 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139603871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.696 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds