Wall clock time and date at job start Mon Mar 30 2020 01:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38174 * 126.45477 * 35.82404 * 3 2 1 5 5 N 1.34434 * 108.38230 * 179.75119 * 4 3 2 6 6 H 0.97001 * 125.40462 * 180.30060 * 5 4 3 7 7 C 1.37747 * 109.18616 * 0.43149 * 5 4 3 8 8 C 1.46795 * 125.84552 * 179.82128 * 7 5 4 9 9 O 1.21678 * 119.99625 * 179.69513 * 8 7 5 10 10 N 1.34770 * 120.00054 * 359.42566 * 8 7 5 11 11 C 1.46505 * 120.00110 * 180.27634 * 10 8 7 12 12 C 1.52993 * 109.47437 * 179.97438 * 11 10 8 13 13 H 1.09006 * 112.96531 * 53.31542 * 12 11 10 14 14 C 1.53944 * 113.77316 * 184.99801 * 12 11 10 15 15 C 1.53942 * 86.29221 * 137.90881 * 14 12 11 16 16 N 1.47582 * 86.11767 * 336.39341 * 15 14 12 17 17 C 1.36934 * 134.49707 * 204.64299 * 16 15 14 18 18 H 1.07992 * 120.00420 * 173.49157 * 17 16 15 19 19 C 1.38823 * 119.99620 * 353.48652 * 17 16 15 20 20 N 1.31618 * 120.00127 * 5.07058 * 19 17 16 21 21 Si 1.86792 * 119.99879 * 185.06967 * 19 17 16 22 22 H 1.48507 * 109.47127 * 94.98908 * 21 19 17 23 23 H 1.48501 * 109.47261 * 214.98617 * 21 19 17 24 24 H 1.48506 * 109.47555 * 334.98857 * 21 19 17 25 25 C 1.36406 * 108.30390 * 359.56682 * 7 5 4 26 26 H 1.08004 * 125.81411 * 0.02562 * 4 3 2 27 27 H 0.96997 * 120.00143 * 0.26427 * 10 8 7 28 28 H 1.09005 * 109.46446 * 300.00039 * 11 10 8 29 29 H 1.08999 * 109.47143 * 59.99482 * 11 10 8 30 30 H 1.09002 * 113.74171 * 252.25977 * 14 12 11 31 31 H 1.09007 * 113.73814 * 23.44925 * 14 12 11 32 32 H 1.08992 * 113.77279 * 90.69500 * 15 14 12 33 33 H 1.09000 * 113.76780 * 221.97974 * 15 14 12 34 34 H 0.96990 * 120.00501 * 179.97438 * 20 19 17 35 35 H 1.08001 * 126.48527 * 180.24465 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3894 -0.9001 -0.6505 5 7 4.6673 -0.5582 -0.4109 6 1 5.4470 -1.0227 -0.7531 7 6 4.6936 0.5549 0.4002 8 6 5.8997 1.2332 0.8901 9 8 5.7988 2.2163 1.5999 10 7 7.1187 0.7640 0.5581 11 6 8.3224 1.4374 1.0520 12 6 9.5636 0.7087 0.5334 13 1 9.5622 0.5840 -0.5495 14 6 10.8869 1.2618 1.0926 15 6 11.3227 -0.2072 1.2405 16 7 9.8822 -0.5262 1.2762 17 6 9.1395 -1.5547 1.7915 18 1 8.0609 -1.5035 1.7741 19 6 9.7731 -2.6634 2.3362 20 7 11.0843 -2.6829 2.4484 21 14 8.7647 -4.1273 2.9097 22 1 8.6998 -5.1394 1.8248 23 1 9.4017 -4.7278 4.1093 24 1 7.3907 -3.6789 3.2511 25 6 3.4070 0.9222 0.6654 26 1 3.0609 -1.7341 -1.2529 27 1 7.1990 -0.0198 -0.0078 28 1 8.3322 2.4687 0.6993 29 1 8.3237 1.4261 2.1419 30 1 11.4718 1.8218 0.3628 31 1 10.7770 1.7866 2.0417 32 1 11.8387 -0.6026 0.3657 33 1 11.8446 -0.4187 2.1738 34 1 11.5270 -3.4573 2.8293 35 1 3.0896 1.7590 1.2700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038150310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:36 Heat of formation + Delta-G solvation = 90.956271 kcal Electronic energy + Delta-G solvation = -20094.478551 eV Core-core repulsion = 16902.294166 eV Total energy + Delta-G solvation = -3192.184385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70985 -39.15681 -37.92615 -36.48012 -34.33104 -32.31991 -31.67711 -30.10528 -28.10180 -27.62960 -23.47283 -23.36642 -22.99633 -21.69829 -20.40907 -19.62071 -18.85748 -16.78394 -16.72048 -15.92186 -15.72616 -15.58964 -15.08824 -14.36449 -14.15299 -13.97790 -13.81363 -13.46517 -13.38723 -13.24008 -12.96904 -12.84523 -12.08302 -11.98778 -11.56499 -11.21624 -11.12199 -10.84934 -10.64617 -10.24738 -9.95370 -9.84216 -9.51466 -9.34306 -8.93964 -8.85680 -8.51824 -6.99752 -5.89183 -3.21367 1.26729 1.62605 2.57162 2.76577 3.22451 3.28043 3.33467 3.34375 3.37196 3.56677 4.06730 4.32272 4.65621 4.77177 4.97771 5.03074 5.27162 5.42015 5.50911 5.59114 5.70937 5.79599 5.96545 6.17696 6.22248 6.30500 6.40025 6.51101 6.56405 6.70920 6.93175 7.14944 7.29432 7.48786 7.52050 7.64218 7.86296 8.27957 8.91930 9.59333 10.48577 11.27926 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.004884 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.120963 B = 5731.620490 C = 6960.204666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.295 3.705 3 C -0.139 4.139 4 C 0.094 3.906 5 N -0.520 5.520 6 H 0.429 0.571 7 C -0.038 4.038 8 C 0.583 3.417 9 O -0.533 6.533 10 N -0.712 5.712 11 C 0.123 3.877 12 C 0.124 3.876 13 H 0.049 0.951 14 C -0.156 4.156 15 C 0.161 3.839 16 N -0.603 5.603 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.003 4.003 20 N -0.915 5.915 21 Si 0.904 3.096 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C -0.062 4.062 26 H 0.187 0.813 27 H 0.397 0.603 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.254 0.746 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 4.736 -8.349 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.020 4.020 3 C -0.150 4.150 4 C -0.051 4.051 5 N -0.114 5.114 6 H 0.268 0.732 7 C -0.150 4.150 8 C 0.369 3.631 9 O -0.410 6.410 10 N -0.361 5.361 11 C -0.001 4.001 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.195 4.195 15 C 0.036 3.964 16 N -0.329 5.329 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.201 4.201 20 N -0.561 5.561 21 Si 0.734 3.266 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.089 4.089 26 H 0.204 0.796 27 H 0.230 0.770 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.768 5.117 -7.667 12.722 hybrid contribution 0.365 -1.725 -0.192 1.774 sum -8.403 3.392 -7.858 11.994 Atomic orbital electron populations 1.81259 1.11852 1.08780 1.09988 1.24654 0.91437 0.93113 0.92788 1.15380 0.84970 1.03129 1.11488 1.22253 0.82357 0.99731 1.00762 1.41861 1.08389 1.23319 1.37852 0.73200 1.20255 0.95794 0.94047 1.04928 1.17004 0.81828 0.83746 0.80555 1.90840 1.86289 1.26209 1.37635 1.45859 1.05708 1.32176 1.52350 1.21842 0.82735 0.95245 1.00275 1.22511 0.92205 0.88410 0.95197 0.93342 1.23787 0.96240 0.99166 1.00299 1.22136 0.87180 0.87189 0.99872 1.46049 1.02908 1.22144 1.61795 1.18896 0.89543 0.94462 1.32390 0.90443 1.24802 0.95673 0.98043 1.01540 1.69824 1.06964 1.29947 1.49348 0.86233 0.79203 0.83085 0.78061 1.21666 1.21590 1.20587 1.21016 0.89284 0.99231 0.99414 0.79580 0.76950 0.91725 0.90609 0.92723 0.90416 0.95363 0.91220 0.93555 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.13 18.54 41.84 0.78 -5.35 16 2 C 0.29 3.44 15.83 -22.47 -0.36 3.09 16 3 C -0.14 -1.39 5.97 -106.84 -0.64 -2.03 16 4 C 0.09 0.69 11.90 -16.44 -0.20 0.50 16 5 N -0.52 -4.33 5.92 -9.27 -0.05 -4.38 16 6 H 0.43 2.65 8.14 -40.82 -0.33 2.32 16 7 C -0.04 -0.45 6.99 -82.41 -0.58 -1.03 16 8 C 0.58 8.72 7.79 -12.80 -0.10 8.62 16 9 O -0.53 -9.77 16.86 5.21 0.09 -9.68 16 10 N -0.71 -10.27 5.51 -61.58 -0.34 -10.61 16 11 C 0.12 1.98 5.54 -4.04 -0.02 1.96 16 12 C 0.12 2.15 4.33 -66.87 -0.29 1.86 16 13 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.16 -2.61 7.86 -25.81 -0.20 -2.82 16 15 C 0.16 3.47 7.42 -2.98 -0.02 3.45 16 16 N -0.60 -13.57 3.57 -170.76 -0.61 -14.18 16 17 C -0.23 -5.63 10.50 -15.06 -0.16 -5.79 16 18 H 0.08 1.84 7.79 -52.49 -0.41 1.43 16 19 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 20 N -0.91 -25.65 11.51 55.49 0.64 -25.01 16 21 Si 0.90 20.80 29.56 -169.99 -5.02 15.78 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.06 -0.72 10.54 -39.09 -0.41 -1.13 16 26 H 0.19 0.68 8.06 -52.48 -0.42 0.26 16 27 H 0.40 5.06 7.55 -40.82 -0.31 4.76 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.68 7.36 -51.93 -0.38 1.30 16 34 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -32.61 317.01 -6.76 -39.37 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.95 Total: 2.81 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.07 Total: 6.50 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.41 Total: -59.54 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.61 -6.76 -39.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038150310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.326 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds