Wall clock time and date at job start Mon Mar 30 2020 01:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38174 * 126.45477 * 35.82404 * 3 2 1 5 5 N 1.34434 * 108.38230 * 179.75119 * 4 3 2 6 6 H 0.97001 * 125.40462 * 180.30060 * 5 4 3 7 7 C 1.37747 * 109.18616 * 0.43149 * 5 4 3 8 8 C 1.46795 * 125.84552 * 179.82128 * 7 5 4 9 9 O 1.21678 * 119.99625 * 179.69513 * 8 7 5 10 10 N 1.34770 * 120.00054 * 359.42566 * 8 7 5 11 11 C 1.46505 * 120.00110 * 180.27634 * 10 8 7 12 12 C 1.52993 * 109.47437 * 179.97438 * 11 10 8 13 13 H 1.09006 * 112.96531 * 53.31542 * 12 11 10 14 14 C 1.53944 * 113.77316 * 184.99801 * 12 11 10 15 15 C 1.53942 * 86.29221 * 137.90881 * 14 12 11 16 16 N 1.47582 * 86.11767 * 336.39341 * 15 14 12 17 17 C 1.36934 * 134.49707 * 204.64299 * 16 15 14 18 18 H 1.07992 * 120.00420 * 173.49157 * 17 16 15 19 19 C 1.38823 * 119.99620 * 353.48652 * 17 16 15 20 20 N 1.31618 * 120.00127 * 5.07058 * 19 17 16 21 21 Si 1.86792 * 119.99879 * 185.06967 * 19 17 16 22 22 H 1.48507 * 109.47127 * 94.98908 * 21 19 17 23 23 H 1.48501 * 109.47261 * 214.98617 * 21 19 17 24 24 H 1.48506 * 109.47555 * 334.98857 * 21 19 17 25 25 C 1.36406 * 108.30390 * 359.56682 * 7 5 4 26 26 H 1.08004 * 125.81411 * 0.02562 * 4 3 2 27 27 H 0.96997 * 120.00143 * 0.26427 * 10 8 7 28 28 H 1.09005 * 109.46446 * 300.00039 * 11 10 8 29 29 H 1.08999 * 109.47143 * 59.99482 * 11 10 8 30 30 H 1.09002 * 113.74171 * 252.25977 * 14 12 11 31 31 H 1.09007 * 113.73814 * 23.44925 * 14 12 11 32 32 H 1.08992 * 113.77279 * 90.69500 * 15 14 12 33 33 H 1.09000 * 113.76780 * 221.97974 * 15 14 12 34 34 H 0.96990 * 120.00501 * 179.97438 * 20 19 17 35 35 H 1.08001 * 126.48527 * 180.24465 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3894 -0.9001 -0.6505 5 7 4.6673 -0.5582 -0.4109 6 1 5.4470 -1.0227 -0.7531 7 6 4.6936 0.5549 0.4002 8 6 5.8997 1.2332 0.8901 9 8 5.7988 2.2163 1.5999 10 7 7.1187 0.7640 0.5581 11 6 8.3224 1.4374 1.0520 12 6 9.5636 0.7087 0.5334 13 1 9.5622 0.5840 -0.5495 14 6 10.8869 1.2618 1.0926 15 6 11.3227 -0.2072 1.2405 16 7 9.8822 -0.5262 1.2762 17 6 9.1395 -1.5547 1.7915 18 1 8.0609 -1.5035 1.7741 19 6 9.7731 -2.6634 2.3362 20 7 11.0843 -2.6829 2.4484 21 14 8.7647 -4.1273 2.9097 22 1 8.6998 -5.1394 1.8248 23 1 9.4017 -4.7278 4.1093 24 1 7.3907 -3.6789 3.2511 25 6 3.4070 0.9222 0.6654 26 1 3.0609 -1.7341 -1.2529 27 1 7.1990 -0.0198 -0.0078 28 1 8.3322 2.4687 0.6993 29 1 8.3237 1.4261 2.1419 30 1 11.4718 1.8218 0.3628 31 1 10.7770 1.7866 2.0417 32 1 11.8387 -0.6026 0.3657 33 1 11.8446 -0.4187 2.1738 34 1 11.5270 -3.4573 2.8293 35 1 3.0896 1.7590 1.2700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038150310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:36 Heat of formation + Delta-G solvation = 67.969391 kcal Electronic energy + Delta-G solvation = -20095.475337 eV Core-core repulsion = 16902.294166 eV Total energy + Delta-G solvation = -3193.181170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.53216 -40.41200 -39.39727 -37.43259 -35.61464 -34.19018 -32.50173 -31.07269 -29.84869 -28.94584 -25.25838 -24.60526 -23.76326 -22.96503 -21.34567 -20.97143 -20.14210 -18.44035 -17.59254 -17.10882 -16.92657 -16.90740 -16.38938 -15.79864 -15.37582 -15.34589 -14.87114 -14.68210 -14.53036 -14.34240 -14.08409 -13.78432 -13.53893 -13.27800 -12.93583 -12.91493 -12.66492 -12.54836 -12.27618 -11.86383 -11.54041 -11.42803 -11.01150 -10.80447 -10.19490 -10.09146 -9.36042 -8.84382 -7.85560 -5.16146 0.43614 0.76697 1.45726 1.48485 1.55495 1.70102 2.01196 2.12720 2.28219 2.49790 2.67676 3.18367 3.34617 3.43426 3.82892 4.03037 4.12101 4.17042 4.23619 4.39196 4.60434 4.68579 4.75864 4.90479 4.92218 5.10082 5.14191 5.35294 5.37160 5.39969 5.59602 5.64141 5.77733 5.99903 6.29176 6.54494 6.64344 6.97266 7.14530 7.68593 8.64060 9.32225 Molecular weight = 274.12amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.004884 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.120963 B = 5731.620490 C = 6960.204666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.317 3.683 3 C -0.161 4.161 4 C 0.140 3.860 5 N -0.508 5.508 6 H 0.442 0.558 7 C -0.061 4.061 8 C 0.583 3.417 9 O -0.575 6.575 10 N -0.707 5.707 11 C 0.132 3.868 12 C 0.134 3.866 13 H 0.076 0.924 14 C -0.133 4.133 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.212 4.212 18 H 0.089 0.911 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.963 3.037 22 H -0.285 1.285 23 H -0.306 1.306 24 H -0.269 1.269 25 C -0.063 4.063 26 H 0.235 0.765 27 H 0.406 0.594 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.032 0.968 34 H 0.244 0.756 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 4.524 -10.352 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C 0.004 3.996 3 C -0.171 4.171 4 C -0.006 4.006 5 N -0.103 5.103 6 H 0.283 0.717 7 C -0.173 4.173 8 C 0.372 3.628 9 O -0.455 6.455 10 N -0.357 5.357 11 C 0.007 3.993 12 C 0.028 3.972 13 H 0.093 0.907 14 C -0.172 4.172 15 C 0.026 3.974 16 N -0.355 5.355 17 C -0.340 4.340 18 H 0.107 0.893 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.234 1.234 24 H -0.194 1.194 25 C -0.090 4.090 26 H 0.251 0.749 27 H 0.242 0.758 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.898 4.919 -9.711 14.714 hybrid contribution 0.702 -1.594 0.384 1.783 sum -9.196 3.326 -9.327 13.514 Atomic orbital electron populations 1.81285 1.13121 1.10322 1.11710 1.24769 0.91514 0.91843 0.91494 1.15363 0.84205 1.04304 1.13240 1.22965 0.81068 0.98752 0.97849 1.41847 1.09419 1.22198 1.36836 0.71652 1.19709 0.94327 0.95940 1.07303 1.17332 0.82536 0.83232 0.79736 1.90814 1.86923 1.28171 1.39599 1.45753 1.05224 1.32404 1.52317 1.21605 0.82987 0.96322 0.98388 1.22668 0.92925 0.85690 0.95895 0.90715 1.23593 0.95830 0.96375 1.01398 1.22096 0.86700 0.90750 0.97819 1.46387 1.03539 1.22909 1.62699 1.19296 0.90307 0.94325 1.30117 0.89343 1.25526 0.96520 1.00805 1.03335 1.70008 1.08462 1.30109 1.51710 0.85278 0.78162 0.80351 0.76902 1.21172 1.23380 1.19376 1.21076 0.89686 0.99223 0.99040 0.74868 0.75824 0.89741 0.93752 0.88858 0.90409 0.95909 0.94984 0.94678 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.00 18.54 19.00 0.35 -12.64 16 2 C 0.32 6.83 15.83 88.33 1.40 8.23 16 3 C -0.16 -2.79 5.97 -21.30 -0.13 -2.91 16 4 C 0.14 1.42 11.90 84.28 1.00 2.42 16 5 N -0.51 -6.49 5.92 -183.25 -1.08 -7.57 16 6 H 0.44 3.54 8.14 -92.71 -0.75 2.79 16 7 C -0.06 -1.32 6.99 40.03 0.28 -1.04 16 8 C 0.58 16.69 7.79 86.48 0.67 17.37 16 9 O -0.57 -20.97 16.86 -4.28 -0.07 -21.04 16 10 N -0.71 -18.94 5.51 -466.98 -2.57 -21.51 16 11 C 0.13 3.99 5.54 86.38 0.48 4.47 16 12 C 0.13 4.30 4.33 45.09 0.20 4.50 16 13 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 14 C -0.13 -4.17 7.86 31.25 0.25 -3.93 16 15 C 0.15 6.52 7.42 86.48 0.64 7.16 16 16 N -0.63 -27.77 3.57 -694.15 -2.48 -30.25 16 17 C -0.21 -10.42 10.50 84.04 0.88 -9.54 16 18 H 0.09 4.04 7.79 -2.91 -0.02 4.02 16 19 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 20 N -0.95 -54.92 11.51 21.65 0.25 -54.67 16 21 Si 0.96 42.88 29.56 68.60 2.03 44.91 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 C -0.06 -1.34 10.54 22.59 0.24 -1.11 16 26 H 0.24 0.16 8.06 -2.91 -0.02 0.14 16 27 H 0.41 9.19 7.55 -92.71 -0.70 8.49 16 28 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.45 8.10 -2.38 -0.02 2.43 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.03 1.60 7.36 -2.39 -0.02 1.58 16 34 H 0.24 13.91 8.31 -92.72 -0.77 13.14 16 35 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -73.51 317.01 2.49 -71.02 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -0.31 Total: 9.35 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 6.38 Total: 22.42 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -5.53 Total: -126.65 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.07 Total: -21.04 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.51 2.49 -71.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038150310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.986 kcal (2) G-P(sol) polarization free energy of solvation -73.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds