Wall clock time and date at job start Mon Mar 30 2020 01:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00301 * 2 1 4 4 H 1.48497 * 109.47159 * 270.00329 * 3 2 1 5 5 H 1.48507 * 109.46880 * 29.99938 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99943 * 3 2 1 7 7 C 1.37877 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00155 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00036 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47567 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00839 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47427 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46919 * 65.00539 * 12 11 10 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 O 1.42892 * 109.47509 * 179.72203 * 16 14 13 18 18 C 1.42897 * 114.00273 * 179.97438 * 17 16 14 19 19 H 1.08999 * 110.45826 * 27.39361 * 18 17 16 20 20 C 1.54508 * 110.51488 * 149.99709 * 18 17 16 21 21 C 1.54481 * 104.06499 * 118.64737 * 20 18 17 22 22 O 1.44424 * 104.80240 * 23.97849 * 21 20 18 23 23 C 1.44431 * 105.27526 * 319.49288 * 22 21 20 24 24 H 0.97001 * 119.99543 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47627 * 60.00331 * 9 7 2 26 26 H 1.09000 * 109.47244 * 300.00230 * 9 7 2 27 27 H 1.09001 * 109.47076 * 59.99922 * 11 10 9 28 28 H 1.09001 * 109.46874 * 300.00832 * 11 10 9 29 29 H 1.08998 * 109.47242 * 304.99968 * 12 11 10 30 30 H 1.09004 * 109.46797 * 184.99784 * 12 11 10 31 31 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 32 32 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 33 33 H 1.09002 * 110.51352 * 237.29292 * 20 18 17 34 34 H 1.09001 * 110.51049 * 359.97438 * 20 18 17 35 35 H 1.08998 * 110.37753 * 142.81413 * 21 20 18 36 36 H 1.09005 * 110.36923 * 265.14897 * 21 20 18 37 37 H 1.08996 * 110.36832 * 281.67921 * 23 22 21 38 38 H 1.08998 * 110.37317 * 159.34164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9879 -2.5414 0.0013 11 6 5.4124 -2.6543 0.0003 12 6 5.8068 -4.1326 0.0012 13 8 5.3717 -4.7503 -1.2388 14 6 5.6424 -6.0555 -1.3971 15 8 6.2241 -6.6615 -0.5285 16 6 5.2269 -6.7633 -2.6609 17 8 5.6294 -8.1327 -2.5943 18 6 5.2808 -8.8979 -3.7497 19 1 5.2211 -8.2556 -4.6283 20 6 6.3049 -10.0324 -3.9771 21 6 5.4655 -11.3242 -3.8631 22 8 4.1160 -10.9163 -4.1764 23 6 3.9439 -9.6386 -3.5253 24 1 -0.4849 0.8401 -0.0004 25 1 3.8752 -0.6798 0.8894 26 1 3.8745 -0.6808 -0.8905 27 1 5.8159 -2.1697 0.8893 28 1 5.8144 -2.1718 -0.8906 29 1 5.3316 -4.6349 0.8437 30 1 6.8897 -4.2195 0.0899 31 1 4.1436 -6.7079 -2.7690 32 1 5.7023 -6.2861 -3.5178 33 1 6.7498 -9.9522 -4.9689 34 1 7.0774 -10.0092 -3.2084 35 1 5.8135 -12.0674 -4.5805 36 1 5.5162 -11.7214 -2.8493 37 1 3.7612 -9.7773 -2.4598 38 1 3.1229 -9.0868 -3.9833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347645889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:41 Heat of formation + Delta-G solvation = -242.279295 kcal Electronic energy + Delta-G solvation = -20613.939189 eV Core-core repulsion = 17035.410204 eV Total energy + Delta-G solvation = -3578.528985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.62285 -40.61167 -38.90836 -38.25222 -37.31735 -34.89220 -32.59650 -31.95132 -30.16224 -29.62543 -28.71642 -24.17966 -23.98277 -23.73722 -22.27919 -22.21283 -19.12625 -18.98872 -18.36382 -18.10358 -17.73143 -17.29823 -17.12010 -16.66245 -16.36046 -16.31306 -15.96015 -15.49632 -15.02280 -14.68285 -14.39600 -14.17607 -13.96218 -13.67867 -13.31590 -13.20567 -13.00415 -12.70499 -12.63157 -12.31670 -12.29050 -11.87380 -11.80009 -11.75158 -11.51785 -11.35207 -10.98988 -10.92975 -10.67306 -10.40785 -8.36855 -6.45436 1.04785 1.22407 1.35158 1.38592 1.49219 2.30440 2.65792 2.94338 2.96166 3.10060 3.47074 3.58834 3.77152 3.90971 3.93108 4.09821 4.11108 4.17243 4.23786 4.29353 4.36659 4.48898 4.57266 4.64427 4.69507 4.71591 4.79538 4.88376 5.00115 5.00477 5.32257 5.43042 5.60471 5.91133 5.98246 6.58367 6.63423 6.71459 7.18895 8.80380 Molecular weight = 274.13amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.002798 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.375998 B =10004.813413 C =10699.989237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.548 4.548 8 H 0.027 0.973 9 C 0.178 3.822 10 O -0.408 6.408 11 C 0.050 3.950 12 C 0.075 3.925 13 O -0.354 6.354 14 C 0.460 3.540 15 O -0.530 6.530 16 C 0.070 3.930 17 O -0.378 6.378 18 C 0.052 3.948 19 H 0.109 0.891 20 C -0.152 4.152 21 C 0.039 3.961 22 O -0.391 6.391 23 C 0.018 3.982 24 H 0.273 0.727 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.909 -15.241 -9.844 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.164 1.164 7 C -0.586 4.586 8 H 0.046 0.954 9 C 0.103 3.897 10 O -0.328 6.328 11 C -0.026 4.026 12 C 0.001 3.999 13 O -0.270 6.270 14 C 0.304 3.696 15 O -0.419 6.419 16 C -0.007 4.007 17 O -0.298 6.298 18 C -0.005 4.005 19 H 0.127 0.873 20 C -0.190 4.190 21 C -0.037 4.037 22 O -0.310 6.310 23 C -0.060 4.060 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.746 -15.645 -9.524 24.817 hybrid contribution -0.131 0.895 0.449 1.010 sum 16.615 -14.751 -9.075 24.000 Atomic orbital electron populations 1.70042 1.08386 1.28835 1.51018 1.25892 0.95832 1.03586 0.93397 0.85569 0.79504 0.77154 0.79861 1.18273 1.20094 1.16445 1.21179 0.91140 0.93785 1.52508 0.95409 1.20367 0.93192 0.80606 0.95560 1.87918 1.20723 1.28729 1.95399 1.22765 0.82803 0.94234 1.02817 1.23274 1.00882 0.91984 0.83715 1.86545 1.74054 1.24307 1.42113 1.23853 0.75646 0.80789 0.89348 1.90658 1.39506 1.67294 1.44463 1.21976 1.02968 0.82817 0.92927 1.87996 1.80446 1.19562 1.41768 1.23809 0.94502 0.93840 0.88376 0.87268 1.23070 0.98330 0.92851 1.04712 1.23605 0.81015 0.97240 1.01845 1.89136 1.32136 1.36106 1.73643 1.24050 0.98699 0.84808 0.98400 0.91792 0.96416 0.96543 0.89055 0.91206 0.91488 0.87001 0.86854 0.85137 0.87366 0.89430 0.86711 0.92249 0.92311 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.96 42.23 27.47 68.60 1.88 44.11 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 7 C -0.55 -33.09 9.99 25.60 0.26 -32.83 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.18 8.65 4.76 71.23 0.34 8.99 16 10 O -0.41 -18.46 10.30 -145.57 -1.50 -19.96 16 11 C 0.05 1.56 6.33 71.98 0.46 2.02 16 12 C 0.07 2.12 5.84 71.98 0.42 2.54 16 13 O -0.35 -10.71 10.19 -48.77 -0.50 -11.21 16 14 C 0.46 12.85 8.03 71.23 0.57 13.42 16 15 O -0.53 -18.01 16.25 28.37 0.46 -17.55 16 16 C 0.07 1.32 6.37 71.23 0.45 1.78 16 17 O -0.38 -8.02 9.51 -129.90 -1.24 -9.25 16 18 C 0.05 0.78 3.61 31.61 0.11 0.90 16 19 H 0.11 1.08 7.82 -2.39 -0.02 1.06 16 20 C -0.15 -1.91 6.90 31.61 0.22 -1.70 16 21 C 0.04 0.54 7.63 72.49 0.55 1.09 16 22 O -0.39 -7.56 11.65 -148.98 -1.74 -9.30 16 23 C 0.02 0.30 7.38 72.48 0.53 0.84 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 26 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 30 H 0.11 2.47 8.13 -2.38 -0.02 2.45 16 31 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.13 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.23 8.00 -2.39 -0.02 1.21 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -78.71 328.79 3.04 -75.67 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.98 Total: 8.09 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.38 Total: -1.86 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.30 Total: -58.74 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -4.51 Total: -67.27 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Total: -78.71 3.04 -75.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347645889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.608 kcal (2) G-P(sol) polarization free energy of solvation -78.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds