Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47361 * 299.99835 * 3 2 1 6 6 H 1.48501 * 109.47491 * 60.00317 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00302 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99823 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47256 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47003 * 65.00164 * 12 11 10 14 14 C 1.34222 * 117.00094 * 180.02562 * 13 12 11 15 15 O 1.20821 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99985 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.46774 * 60.00058 * 16 14 13 18 18 C 1.53005 * 109.47035 * 179.97438 * 16 14 13 19 19 C 1.53000 * 109.47151 * 180.02562 * 18 16 14 20 20 C 1.53004 * 109.46982 * 300.00431 * 19 18 16 21 21 C 1.52995 * 109.47540 * 59.99824 * 20 19 18 22 22 H 1.08997 * 109.47714 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.46919 * 59.99760 * 21 20 19 24 24 C 1.52992 * 109.47503 * 299.99915 * 16 14 13 25 25 H 0.96993 * 119.99882 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46616 * 59.99939 * 9 7 2 27 27 H 1.08997 * 109.47141 * 300.00383 * 9 7 2 28 28 H 1.09004 * 109.46868 * 60.00838 * 11 10 9 29 29 H 1.08992 * 109.47403 * 300.00259 * 11 10 9 30 30 H 1.08993 * 109.46955 * 185.00422 * 12 11 10 31 31 H 1.09000 * 109.47050 * 305.00250 * 12 11 10 32 32 H 1.08994 * 109.47204 * 300.00230 * 18 16 14 33 33 H 1.08998 * 109.47065 * 60.00332 * 18 16 14 34 34 H 1.09003 * 109.47442 * 59.99921 * 19 18 16 35 35 H 1.08999 * 109.47190 * 180.02562 * 19 18 16 36 36 H 1.09005 * 109.47344 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.46985 * 299.99705 * 20 19 18 38 38 H 1.09006 * 109.47223 * 299.99868 * 24 16 14 39 39 H 1.08999 * 109.47182 * 59.99783 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0031 12 6 2.6481 -5.9563 0.0033 13 8 3.4002 -5.8875 1.2435 14 6 4.3950 -6.7744 1.4028 15 8 4.6293 -7.5818 0.5350 16 6 5.2197 -6.7631 2.6641 17 1 4.5718 -6.9369 3.5233 18 6 6.2771 -7.8666 2.5919 19 6 7.1140 -7.8556 3.8727 20 6 7.8031 -6.4975 4.0200 21 6 6.7457 -5.3941 4.0922 22 1 7.2366 -4.4266 4.1966 23 9 5.9138 -5.6170 5.1947 24 6 5.9084 -5.4049 2.8111 25 1 -0.4849 0.8400 0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6247 -2.5564 0.8919 28 1 0.9441 -4.9831 -0.8862 29 1 0.9459 -4.9818 0.8938 30 1 2.1820 -6.9376 -0.0851 31 1 3.3210 -5.7965 -0.8391 32 1 5.7862 -8.8341 2.4874 33 1 6.9250 -7.6932 1.7327 34 1 6.4659 -8.0291 4.7317 35 1 7.8676 -8.6414 3.8210 36 1 8.3997 -6.4898 4.9322 37 1 8.4513 -6.3239 3.1610 38 1 6.5563 -5.2312 1.9519 39 1 5.1548 -4.6191 2.8627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326632886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -212.331054 kcal Electronic energy + Delta-G solvation = -21388.052131 eV Core-core repulsion = 17823.194588 eV Total energy + Delta-G solvation = -3564.857542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.78747 -40.55387 -37.88438 -36.88157 -35.96577 -32.79077 -31.75939 -30.61690 -29.95852 -26.95969 -24.59476 -23.00243 -22.46462 -22.07705 -20.87712 -19.81072 -17.71821 -16.98490 -16.64420 -16.41066 -15.83587 -15.61916 -15.28314 -15.19434 -14.84034 -14.52431 -14.28717 -13.69194 -13.61487 -13.09465 -12.76716 -12.58609 -12.52871 -12.13118 -11.96649 -11.78518 -11.44169 -11.40400 -11.06219 -10.91700 -10.88874 -10.78828 -10.73569 -10.38017 -10.34038 -10.16157 -10.02093 -9.12916 -8.89332 -8.22750 -6.13317 -4.14995 2.25781 2.76654 3.27921 3.34393 3.40605 4.19647 4.24509 4.31363 4.40470 4.52787 4.71012 4.74568 4.83835 4.90218 5.02775 5.07513 5.20340 5.22926 5.23463 5.33503 5.45089 5.61842 5.63279 5.71569 5.83604 5.85611 5.86453 5.92839 6.00890 6.09887 6.11051 6.61182 7.04421 7.38629 7.76744 7.85546 8.11201 8.50995 8.97769 9.49884 10.98369 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.003968 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.635188 B = 7054.789058 C = 8142.875019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.339 6.339 14 C 0.465 3.535 15 O -0.516 6.516 16 C -0.079 4.079 17 H 0.113 0.887 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.149 4.149 21 C 0.095 3.905 22 H 0.090 0.910 23 F -0.211 7.211 24 C -0.141 4.141 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 -15.122 7.331 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.254 6.254 14 C 0.308 3.692 15 O -0.405 6.405 16 C -0.098 4.098 17 H 0.131 0.869 18 C -0.142 4.142 19 C -0.157 4.157 20 C -0.186 4.186 21 C 0.059 3.941 22 H 0.108 0.892 23 F -0.192 7.192 24 C -0.179 4.179 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.820 -15.190 7.068 21.096 hybrid contribution -0.180 0.812 -0.165 0.848 sum 12.640 -14.378 6.903 20.350 Atomic orbital electron populations 1.69968 1.06114 1.27105 1.50582 1.24950 0.94981 0.99455 0.95106 0.86278 0.80010 0.82548 0.77647 1.19476 1.20836 1.20789 1.21082 0.94111 0.89276 1.50780 0.91473 1.20243 0.88763 0.83511 0.95514 1.87908 1.35333 1.12612 1.95228 1.22321 0.93271 0.85458 1.00559 1.23215 0.93691 0.98759 0.84349 1.86606 1.43316 1.54027 1.41474 1.23615 0.79029 0.77872 0.88673 1.90630 1.68119 1.38252 1.43531 1.21024 0.96528 0.97813 0.94471 0.86938 1.21469 0.96517 0.97757 0.98475 1.21517 0.99331 0.96820 0.98022 1.22188 0.97832 0.95047 1.03580 1.21546 0.89748 0.99941 0.82906 0.89222 1.92808 1.74241 1.96296 1.55837 1.22172 1.00886 0.96769 0.98080 0.92669 0.97629 0.97472 0.91970 0.93185 0.90486 0.90542 0.90729 0.90767 0.91061 0.90932 0.90610 0.89909 0.89402 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -15.14 9.43 -34.44 -0.32 -15.46 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.31 5.69 36.01 0.20 5.51 16 10 O -0.39 -9.48 10.30 -38.79 -0.40 -9.88 16 11 C 0.06 1.13 6.33 37.16 0.24 1.37 16 12 C 0.07 1.18 5.85 37.16 0.22 1.40 16 13 O -0.34 -5.69 10.09 -42.00 -0.42 -6.11 16 14 C 0.46 6.88 7.26 36.01 0.26 7.14 16 15 O -0.52 -8.50 15.73 -18.75 -0.29 -8.80 16 16 C -0.08 -0.90 2.50 -91.77 -0.23 -1.13 16 17 H 0.11 1.24 7.80 -51.93 -0.41 0.83 16 18 C -0.10 -1.00 4.49 -26.73 -0.12 -1.12 16 19 C -0.12 -0.91 5.80 -26.73 -0.16 -1.07 16 20 C -0.15 -1.08 5.72 -26.73 -0.15 -1.23 16 21 C 0.09 0.87 4.13 -26.71 -0.11 0.76 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 23 F -0.21 -2.45 16.04 2.25 0.04 -2.41 16 24 C -0.14 -1.53 4.93 -26.71 -0.13 -1.67 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.57 7.80 -51.93 -0.41 0.17 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -32.89 329.48 -7.07 -39.96 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -6.27 Total: -4.42 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.40 Total: -3.98 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.12 Total: -24.79 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.89 -7.07 -39.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326632886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.366 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds